RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 ALKQ9UM73 1620 aa18.27■□□□□ 0.51
CD48-201ENST00000368045 DLC1Q96QB1 1528 aa18.26■□□□□ 0.51
CD48-201ENST00000368045 USP19O94966 1318 aa18.26■□□□□ 0.51
CD48-201ENST00000368045 DZIP1LQ8IYY4 767 aaKnown RBP18.26■□□□□ 0.51
CD48-201ENST00000368045 GGNBP2Q9H3C7 697 aa18.26■□□□□ 0.51
CD48-201ENST00000368045 REREQ9P2R6 1566 aa18.26■□□□□ 0.51
CD48-201ENST00000368045 MINK1Q8N4C8 1332 aaPredicted RBP18.25■□□□□ 0.51
CD48-201ENST00000368045 U2SURPO15042 1029 aaKnown RBP18.25■□□□□ 0.51
CD48-201ENST00000368045 MYO5BQ9ULV0 1848 aa18.24■□□□□ 0.51
CD48-201ENST00000368045 CDC42BPGQ6DT37 1551 aa18.24■□□□□ 0.51
CD48-201ENST00000368045 AGLP35573 1532 aa18.24■□□□□ 0.51
CD48-201ENST00000368045 SLC4A3P48751 1232 aa18.24■□□□□ 0.51
CD48-201ENST00000368045 FTSJ3Q8IY81 847 aaKnown RBP18.24■□□□□ 0.51
CD48-201ENST00000368045 TRIM35Q9UPQ4 493 aa18.24■□□□□ 0.51
CD48-201ENST00000368045 DIAPH1O60610 1272 aaKnown RBP18.23■□□□□ 0.51
CD48-201ENST00000368045 BECN1Q14457 450 aa18.23■□□□□ 0.51
CD48-201ENST00000368045 BCL2L13Q9BXK5 485 aa18.23■□□□□ 0.51
CD48-201ENST00000368045 PDZRN3Q9UPQ7 1066 aa18.23■□□□□ 0.51
CD48-201ENST00000368045 UPF2Q9HAU5 1272 aaKnown RBP18.22■□□□□ 0.51
CD48-201ENST00000368045 TNNQ9UQP3 1299 aa18.22■□□□□ 0.51
CD48-201ENST00000368045 ATP7BP35670 1465 aa18.22■□□□□ 0.51
CD48-201ENST00000368045 CDK19Q9BWU1 502 aa18.22■□□□□ 0.51
CD48-201ENST00000368045 SMC4Q9NTJ3 1288 aa18.22■□□□□ 0.51
CD48-201ENST00000368045 EXOSC9Q06265 439 aaKnown RBP18.21■□□□□ 0.51
CD48-201ENST00000368045 HDAC1Q13547 482 aaPredicted RBP18.21■□□□□ 0.51
CD48-201ENST00000368045 DDX19BQ9UMR2 479 aa18.21■□□□□ 0.51
CD48-201ENST00000368045 FCHSD2O94868 740 aa18.2■□□□□ 0.5
CD48-201ENST00000368045 TSR2Q969E8 191 aaKnown RBP18.19■□□□□ 0.5
CD48-201ENST00000368045 ATF7IPQ6VMQ6 1270 aa18.19■□□□□ 0.5
CD48-201ENST00000368045 ZNF428Q96B54 188 aa18.19■□□□□ 0.5
CD48-201ENST00000368045 KIF16BQ96L93 1317 aa18.19■□□□□ 0.5
CD48-201ENST00000368045 KIF20BQ96Q89 1820 aa18.18■□□□□ 0.5
CD48-201ENST00000368045 IPO8O15397 1037 aaKnown RBP18.18■□□□□ 0.5
CD48-201ENST00000368045 RIPK4P57078 832 aa18.18■□□□□ 0.5
CD48-201ENST00000368045 GSE1Q14687 1217 aa18.18■□□□□ 0.5
CD48-201ENST00000368045 SSH1Q8WYL5 1049 aa18.18■□□□□ 0.5
CD48-201ENST00000368045 ALDH1L2Q3SY69 923 aa18.17■□□□□ 0.5
CD48-201ENST00000368045 FBXO31Q5XUX0 539 aaPredicted RBP18.17■□□□□ 0.5
CD48-201ENST00000368045 STAG3Q9UJ98 1225 aa18.17■□□□□ 0.5
CD48-201ENST00000368045 A2ML1A8K2U0 1454 aa18.17■□□□□ 0.5
CD48-201ENST00000368045 SEC24BO95487 1268 aa18.17■□□□□ 0.5
CD48-201ENST00000368045 TRIM27P14373 513 aa18.17■□□□□ 0.5
CD48-201ENST00000368045 TBC1D32Q96NH3 1257 aa18.17■□□□□ 0.5
CD48-201ENST00000368045 CABP1Q9NZU7 370 aa18.17■□□□□ 0.5
CD48-201ENST00000368045 SPATA31D1Q6ZQQ2 1576 aa18.17■□□□□ 0.5
CD48-201ENST00000368045 PPIP5K1Q6PFW1 1433 aa18.16■□□□□ 0.5
CD48-201ENST00000368045 BRPF1P55201 1214 aaPredicted RBP18.15■□□□□ 0.5
CD48-201ENST00000368045 FAM135BQ49AJ0 1406 aa18.15■□□□□ 0.5
CD48-201ENST00000368045 CALD1Q05682 793 aaKnown RBP18.14■□□□□ 0.5
CD48-201ENST00000368045 RIMS2Q9UQ26 1411 aa18.14■□□□□ 0.5
CD48-201ENST00000368045 LRRC7Q96NW7 1537 aa18.12■□□□□ 0.49
CD48-201ENST00000368045 ITPRIPQ8IWB1 547 aa18.12■□□□□ 0.49
CD48-201ENST00000368045 RSPH6AQ9H0K4 717 aa18.12■□□□□ 0.49
CD48-201ENST00000368045 NOB1Q9ULX3 412 aaKnown RBP18.12■□□□□ 0.49
CD48-201ENST00000368045 EDC4Q6P2E9 1401 aaKnown RBP18.12■□□□□ 0.49
CD48-201ENST00000368045 SMC5Q8IY18 1101 aa18.12■□□□□ 0.49
CD48-201ENST00000368045 POLKQ9UBT6 870 aa18.12■□□□□ 0.49
CD48-201ENST00000368045 CHMP4BQ9H444 224 aaKnown RBP18.11■□□□□ 0.49
CD48-201ENST00000368045 ZBTB40Q9NUA8 1239 aa18.11■□□□□ 0.49
CD48-201ENST00000368045 DIP2BQ9P265 1576 aa18.11■□□□□ 0.49
CD48-201ENST00000368045 CPSF1Q10570 1443 aaKnown RBP18.1■□□□□ 0.49
CD48-201ENST00000368045 SETD1AO15047 1707 aaKnown RBP18.1■□□□□ 0.49
CD48-201ENST00000368045 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.1■□□□□ 0.49
CD48-201ENST00000368045 AATKQ6ZMQ8 1374 aa18.1■□□□□ 0.49
CD48-201ENST00000368045 NFE2L2Q16236 605 aa18.09■□□□□ 0.49
CD48-201ENST00000368045 SIRT1Q96EB6 747 aa18.09■□□□□ 0.49
CD48-201ENST00000368045 RIMBP3CA6NJZ7 1639 aa18.09■□□□□ 0.49
CD48-201ENST00000368045 RIMBP3BA6NNM3 1639 aa18.09■□□□□ 0.49
CD48-201ENST00000368045 RIMBP3Q9UFD9 1639 aa18.09■□□□□ 0.49
CD48-201ENST00000368045 CDK12Q9NYV4 1490 aaPredicted RBP18.09■□□□□ 0.49
CD48-201ENST00000368045 FRAT2O75474 233 aaPredicted RBP18.09■□□□□ 0.49
CD48-201ENST00000368045 PRKAR2BP31323 418 aa18.09■□□□□ 0.49
CD48-201ENST00000368045 TMEM57Q8N5G2 664 aa18.09■□□□□ 0.49
CD48-201ENST00000368045 FAM69CQ0P6D2 419 aa18.08■□□□□ 0.48
CD48-201ENST00000368045 ARHGAP45Q92619 1136 aa18.07■□□□□ 0.48
CD48-201ENST00000368045 WASLO00401 505 aaPredicted RBP18.06■□□□□ 0.48
CD48-201ENST00000368045 WAPLQ7Z5K2 1190 aa18.06■□□□□ 0.48
CD48-201ENST00000368045 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.06■□□□□ 0.48
CD48-201ENST00000368045 SENP3Q9H4L4 574 aaPredicted RBP18.06■□□□□ 0.48
CD48-201ENST00000368045 IFT57Q9NWB7 429 aa18.06■□□□□ 0.48
CD48-201ENST00000368045 PIK3R4Q99570 1358 aa18.06■□□□□ 0.48
CD48-201ENST00000368045 GNAI1P63096 354 aa18.05■□□□□ 0.48
CD48-201ENST00000368045 LMOD3Q0VAK6 560 aa18.05■□□□□ 0.48
CD48-201ENST00000368045 ANTXR1Q9H6X2 564 aa18.05■□□□□ 0.48
CD48-201ENST00000368045 TECPR2O15040 1411 aa18.05■□□□□ 0.48
CD48-201ENST00000368045 PTCH1Q13635 1447 aa18.04■□□□□ 0.48
CD48-201ENST00000368045 IL13P35225 146 aa18.04■□□□□ 0.48
CD48-201ENST00000368045 NUCB1Q02818 461 aa18.04■□□□□ 0.48
CD48-201ENST00000368045 CYB5RLQ6IPT4 315 aa18.04■□□□□ 0.48
CD48-201ENST00000368045 HDGFP51858 240 aaKnown RBP18.03■□□□□ 0.48
CD48-201ENST00000368045 TBC1D2Q9BYX2 928 aa18.03■□□□□ 0.48
CD48-201ENST00000368045 NRXN3Q9Y4C0 1643 aa18.02■□□□□ 0.48
CD48-201ENST00000368045 ZNF853P0CG23 659 aa18.02■□□□□ 0.48
CD48-201ENST00000368045 KNDC1Q76NI1 1749 aa18.02■□□□□ 0.48
CD48-201ENST00000368045 C22orf23Q9BZE7 217 aa18.02■□□□□ 0.47
CD48-201ENST00000368045 VAMP4O75379 141 aa18.01■□□□□ 0.47
CD48-201ENST00000368045 MRPL50Q8N5N7 158 aaKnown RBP18.01■□□□□ 0.47
CD48-201ENST00000368045 GCC1Q96CN9 775 aa17.99■□□□□ 0.47
CD48-201ENST00000368045 COG3Q96JB2 828 aa17.99■□□□□ 0.47
CD48-201ENST00000368045 PHACTR3Q96KR7 559 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms