RNA–Protein interactions for RNA: ENST00000361339.9

IFT140-201, Transcript of intraflagellar transport 140, humanhuman

TSL 1 (best) BASIC

Gene IFT140, Length 2,987 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140-201ENST00000361339 PLEKHF1Q96S99 279 aa20.7■□□□□ 0.9
IFT140-201ENST00000361339 ZFYVE9O95405 1425 aa20.7■□□□□ 0.9
IFT140-201ENST00000361339 PDE3AQ14432 1141 aa20.7■□□□□ 0.9
IFT140-201ENST00000361339 WDR63Q8IWG1 891 aa20.7■□□□□ 0.9
IFT140-201ENST00000361339 SPRYD3Q8NCJ5 442 aa20.7■□□□□ 0.9
IFT140-201ENST00000361339 ZRANB1Q9UGI0 708 aa20.7■□□□□ 0.9
IFT140-201ENST00000361339 TRIM35Q9UPQ4 493 aa20.69■□□□□ 0.9
IFT140-201ENST00000361339 ALKQ9UM73 1620 aa20.69■□□□□ 0.9
IFT140-201ENST00000361339 NGEFQ8N5V2 710 aa20.68■□□□□ 0.9
IFT140-201ENST00000361339 PKNOX2Q96KN3 472 aa20.68■□□□□ 0.9
IFT140-201ENST00000361339 PUS7Q96PZ0 661 aaKnown RBP20.68■□□□□ 0.9
IFT140-201ENST00000361339 SEC24BO95487 1268 aa20.68■□□□□ 0.9
IFT140-201ENST00000361339 EXOSC9Q06265 439 aaKnown RBP20.68■□□□□ 0.9
IFT140-201ENST00000361339 NAP1L5Q96NT1 182 aaPredicted RBP20.68■□□□□ 0.9
IFT140-201ENST00000361339 NLRP1Q9C000 1473 aa20.68■□□□□ 0.9
IFT140-201ENST00000361339 TMPOP42166 694 aaKnown RBP20.67■□□□□ 0.9
IFT140-201ENST00000361339 TERF2IPQ9NYB0 399 aa20.67■□□□□ 0.9
IFT140-201ENST00000361339 VSIG10Q8N0Z9 540 aa20.67■□□□□ 0.9
IFT140-201ENST00000361339 GZF1Q9H116 711 aaPredicted RBP20.67■□□□□ 0.9
IFT140-201ENST00000361339 NSD2O96028 1365 aa20.66■□□□□ 0.9
IFT140-201ENST00000361339 COL3A1P02461 1466 aaPredicted RBP20.65■□□□□ 0.9
IFT140-201ENST00000361339 ATAD2Q6PL18 1390 aa20.65■□□□□ 0.9
IFT140-201ENST00000361339 CCDC27Q2M243 656 aa20.64■□□□□ 0.89
IFT140-201ENST00000361339 TXNDC2Q86VQ3 553 aa20.64■□□□□ 0.89
IFT140-201ENST00000361339 ARHGEF40Q8TER5 1519 aa20.64■□□□□ 0.89
IFT140-201ENST00000361339 RIMBP3CA6NJZ7 1639 aa20.63■□□□□ 0.89
IFT140-201ENST00000361339 RIMBP3BA6NNM3 1639 aa20.63■□□□□ 0.89
IFT140-201ENST00000361339 RIMBP3Q9UFD9 1639 aa20.63■□□□□ 0.89
IFT140-201ENST00000361339 DIP2BQ9P265 1576 aa20.63■□□□□ 0.89
IFT140-201ENST00000361339 HMOX1P09601 288 aa20.63■□□□□ 0.89
IFT140-201ENST00000361339 THUMPD2Q9BTF0 503 aaKnown RBP20.63■□□□□ 0.89
IFT140-201ENST00000361339 CLTCQ00610 1675 aaKnown RBP20.63■□□□□ 0.89
IFT140-201ENST00000361339 RIPK4P57078 832 aa20.63■□□□□ 0.89
IFT140-201ENST00000361339 HDGFL2Q7Z4V5 671 aaPredicted RBP20.63■□□□□ 0.89
IFT140-201ENST00000361339 A2ML1A8K2U0 1454 aa20.62■□□□□ 0.89
IFT140-201ENST00000361339 MYH16Q9H6N6 1097 aa20.62■□□□□ 0.89
IFT140-201ENST00000361339 MAPK8IP3Q9UPT6 1336 aa20.62■□□□□ 0.89
IFT140-201ENST00000361339 DIAPH1O60610 1272 aaKnown RBP20.61■□□□□ 0.89
IFT140-201ENST00000361339 EMILIN1Q9Y6C2 1016 aa20.61■□□□□ 0.89
IFT140-201ENST00000361339 SSH1Q8WYL5 1049 aa20.61■□□□□ 0.89
IFT140-201ENST00000361339 NME9Q86XW9 330 aa20.61■□□□□ 0.89
IFT140-201ENST00000361339 SMC4Q9NTJ3 1288 aa20.61■□□□□ 0.89
IFT140-201ENST00000361339 METP08581 1390 aa20.61■□□□□ 0.89
IFT140-201ENST00000361339 RIMS2Q9UQ26 1411 aa20.6■□□□□ 0.89
IFT140-201ENST00000361339 ADGRB2O60241 1585 aa20.59■□□□□ 0.89
IFT140-201ENST00000361339 POLKQ9UBT6 870 aa20.59■□□□□ 0.89
IFT140-201ENST00000361339 PHACTR3Q96KR7 559 aa20.59■□□□□ 0.89
IFT140-201ENST00000361339 NUTM2FA1L443 756 aa20.58■□□□□ 0.89
IFT140-201ENST00000361339 PRKAR2BP31323 418 aa20.58■□□□□ 0.89
IFT140-201ENST00000361339 PDZRN3Q9UPQ7 1066 aa20.58■□□□□ 0.88
IFT140-201ENST00000361339 USP19O94966 1318 aa20.57■□□□□ 0.88
IFT140-201ENST00000361339 TRIM27P14373 513 aa20.57■□□□□ 0.88
IFT140-201ENST00000361339 PLPPR3Q6T4P5 718 aa20.57■□□□□ 0.88
IFT140-201ENST00000361339 NINLQ9Y2I6 1382 aa20.57■□□□□ 0.88
IFT140-201ENST00000361339 FTSJ3Q8IY81 847 aaKnown RBP20.56■□□□□ 0.88
IFT140-201ENST00000361339 RRS1Q15050 365 aaKnown RBP20.55■□□□□ 0.88
IFT140-201ENST00000361339 MVPQ14764 893 aaKnown RBP20.55■□□□□ 0.88
IFT140-201ENST00000361339 NOB1Q9ULX3 412 aaKnown RBP20.55■□□□□ 0.88
IFT140-201ENST00000361339 ZKSCAN2Q63HK3 967 aa20.55■□□□□ 0.88
IFT140-201ENST00000361339 DZIP1LQ8IYY4 767 aaKnown RBP20.55■□□□□ 0.88
IFT140-201ENST00000361339 PANK2Q9BZ23 570 aa20.55■□□□□ 0.88
IFT140-201ENST00000361339 ELL2O00472 640 aaPredicted RBP20.53■□□□□ 0.88
IFT140-201ENST00000361339 ITPRIPQ8IWB1 547 aa20.53■□□□□ 0.88
IFT140-201ENST00000361339 ZMYND15Q9H091 742 aa20.52■□□□□ 0.88
IFT140-201ENST00000361339 PNPLA6Q8IY17 1366 aa20.52■□□□□ 0.88
IFT140-201ENST00000361339 WASLO00401 505 aaPredicted RBP20.51■□□□□ 0.87
IFT140-201ENST00000361339 PNNQ9H307 717 aaKnown RBP20.51■□□□□ 0.87
IFT140-201ENST00000361339 LRRC7Q96NW7 1537 aa20.51■□□□□ 0.87
IFT140-201ENST00000361339 GLIPR1L2Q4G1C9 344 aa20.5■□□□□ 0.87
IFT140-201ENST00000361339 TMEM57Q8N5G2 664 aa20.5■□□□□ 0.87
IFT140-201ENST00000361339 PPIP5K1Q6PFW1 1433 aa20.5■□□□□ 0.87
IFT140-201ENST00000361339 ZMYM3Q14202 1370 aa20.49■□□□□ 0.87
IFT140-201ENST00000361339 TSPYL6Q8N831 410 aa20.49■□□□□ 0.87
IFT140-201ENST00000361339 PMFBP1Q8TBY8 1022 aa20.49■□□□□ 0.87
IFT140-201ENST00000361339 NUDT16Q96DE0 195 aaKnown RBP20.49■□□□□ 0.87
IFT140-201ENST00000361339 SPATA31D1Q6ZQQ2 1576 aa20.48■□□□□ 0.87
IFT140-201ENST00000361339 ANKRD26Q9UPS8 1709 aa20.48■□□□□ 0.87
IFT140-201ENST00000361339 FAM83GA6ND36 823 aa20.48■□□□□ 0.87
IFT140-201ENST00000361339 SETD1AO15047 1707 aaKnown RBP20.48■□□□□ 0.87
IFT140-201ENST00000361339 DCTN1Q14203 1278 aa20.47■□□□□ 0.87
IFT140-201ENST00000361339 HSP90AA2PQ14568 343 aaPredicted RBP20.47■□□□□ 0.87
IFT140-201ENST00000361339 ATF7IPQ6VMQ6 1270 aa20.47■□□□□ 0.87
IFT140-201ENST00000361339 ESF1Q9H501 851 aaKnown RBP20.47■□□□□ 0.87
IFT140-201ENST00000361339 NRXN3Q9Y4C0 1643 aa20.47■□□□□ 0.87
IFT140-201ENST00000361339 MED14O60244 1454 aa20.47■□□□□ 0.87
IFT140-201ENST00000361339 PRR36Q9H6K5 1346 aa20.47■□□□□ 0.87
IFT140-201ENST00000361339 CEBPAP49715 358 aaPredicted RBP20.47■□□□□ 0.87
IFT140-201ENST00000361339 SOX12O15370 315 aa20.46■□□□□ 0.87
IFT140-201ENST00000361339 XRCC6P12956 609 aaKnown RBP eCLIP20.46■□□□□ 0.87
IFT140-201ENST00000361339 CPS1P31327 1500 aa20.46■□□□□ 0.87
IFT140-201ENST00000361339 KIF20BQ96Q89 1820 aa20.46■□□□□ 0.87
IFT140-201ENST00000361339 AGLP35573 1532 aa20.46■□□□□ 0.87
IFT140-201ENST00000361339 BECN1Q14457 450 aa20.46■□□□□ 0.87
IFT140-201ENST00000361339 FCHSD2O94868 740 aa20.45■□□□□ 0.86
IFT140-201ENST00000361339 L1TD1Q5T7N2 865 aaKnown RBP20.45■□□□□ 0.86
IFT140-201ENST00000361339 RWDD1Q9H446 243 aaPredicted RBP20.45■□□□□ 0.86
IFT140-201ENST00000361339 HSP90AA1P07900 732 aaKnown RBP20.44■□□□□ 0.86
IFT140-201ENST00000361339 IL13P35225 146 aa20.44■□□□□ 0.86
IFT140-201ENST00000361339 MAP2P11137 1827 aaKnown RBP20.44■□□□□ 0.86
IFT140-201ENST00000361339 GOLGA6L3A6NEY3 463 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms