RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 OSCARQ8IYS5 282 aa15.28■□□□□ 0.04
CLIP3-201ENST00000360535 NLRP1Q9C000 1473 aa15.28■□□□□ 0.04
CLIP3-201ENST00000360535 AAMPQ13685 434 aa15.28■□□□□ 0.04
CLIP3-201ENST00000360535 CDK19Q9BWU1 502 aa15.28■□□□□ 0.04
CLIP3-201ENST00000360535 RPGRIP1LQ68CZ1 1315 aa15.28■□□□□ 0.04
CLIP3-201ENST00000360535 WAPLQ7Z5K2 1190 aa15.28■□□□□ 0.04
CLIP3-201ENST00000360535 ADGRB3O60242 1522 aa15.27■□□□□ 0.04
CLIP3-201ENST00000360535 IPO8O15397 1037 aaKnown RBP15.27■□□□□ 0.04
CLIP3-201ENST00000360535 MCM4P33991 863 aa15.27■□□□□ 0.03
CLIP3-201ENST00000360535 ARAP3Q8WWN8 1544 aa15.26■□□□□ 0.03
CLIP3-201ENST00000360535 NRXN1Q9ULB1 1477 aa15.26■□□□□ 0.03
CLIP3-201ENST00000360535 PANK2Q9BZ23 570 aa15.26■□□□□ 0.03
CLIP3-201ENST00000360535 MLECQ14165 292 aa15.26■□□□□ 0.03
CLIP3-201ENST00000360535 APBB1O00213 710 aa15.25■□□□□ 0.03
CLIP3-201ENST00000360535 PHACTR3Q96KR7 559 aa15.25■□□□□ 0.03
CLIP3-201ENST00000360535 ADGRB1O14514 1584 aa15.25■□□□□ 0.03
CLIP3-201ENST00000360535 TULP4Q9NRJ4 1543 aa15.25■□□□□ 0.03
CLIP3-201ENST00000360535 HSP90AB1P08238 724 aaKnown RBP15.25■□□□□ 0.03
CLIP3-201ENST00000360535 TSPYL6Q8N831 410 aa15.25■□□□□ 0.03
CLIP3-201ENST00000360535 GOLGA6L3A6NEY3 463 aa15.25■□□□□ 0.03
CLIP3-201ENST00000360535 IFT172Q9UG01 1749 aa15.25■□□□□ 0.03
CLIP3-201ENST00000360535 VIRMAQ69YN4 1812 aaKnown RBP15.24■□□□□ 0.03
CLIP3-201ENST00000360535 ZBTB40Q9NUA8 1239 aa15.24■□□□□ 0.03
CLIP3-201ENST00000360535 CHMP5Q9NZZ3 219 aa15.24■□□□□ 0.03
CLIP3-201ENST00000360535 ZRANB1Q9UGI0 708 aa15.24■□□□□ 0.03
CLIP3-201ENST00000360535 TRAK2O60296 914 aa15.24■□□□□ 0.03
CLIP3-201ENST00000360535 HDAC1Q13547 482 aaPredicted RBP15.24■□□□□ 0.03
CLIP3-201ENST00000360535 GLI2P10070 1586 aa15.23■□□□□ 0.03
CLIP3-201ENST00000360535 L1TD1Q5T7N2 865 aaKnown RBP15.23■□□□□ 0.03
CLIP3-201ENST00000360535 EMILIN1Q9Y6C2 1016 aa15.23■□□□□ 0.03
CLIP3-201ENST00000360535 SOX12O15370 315 aa15.23■□□□□ 0.03
CLIP3-201ENST00000360535 DCTN1Q14203 1278 aa15.23■□□□□ 0.03
CLIP3-201ENST00000360535 CHD1LQ86WJ1 897 aa15.22■□□□□ 0.03
CLIP3-201ENST00000360535 PPLO60437 1756 aa15.22■□□□□ 0.03
CLIP3-201ENST00000360535 SMC5Q8IY18 1101 aa15.22■□□□□ 0.03
CLIP3-201ENST00000360535 KIF16BQ96L93 1317 aa15.22■□□□□ 0.03
CLIP3-201ENST00000360535 SETBP1Q9Y6X0 1596 aa15.22■□□□□ 0.03
CLIP3-201ENST00000360535 RBM42Q9BTD8 480 aaKnown RBP15.22■□□□□ 0.03
CLIP3-201ENST00000360535 MYO3AQ8NEV4 1616 aa15.21■□□□□ 0.03
CLIP3-201ENST00000360535 FAM83GA6ND36 823 aa15.21■□□□□ 0.03
CLIP3-201ENST00000360535 XRCC6P12956 609 aaKnown RBP eCLIP15.21■□□□□ 0.03
CLIP3-201ENST00000360535 ABCC11Q96J66 1382 aa15.21■□□□□ 0.03
CLIP3-201ENST00000360535 NUTM2FA1L443 756 aa15.21■□□□□ 0.03
CLIP3-201ENST00000360535 RRAGDQ9NQL2 400 aaPredicted RBP15.21■□□□□ 0.03
CLIP3-201ENST00000360535 NSD2O96028 1365 aa15.21■□□□□ 0.02
CLIP3-201ENST00000360535 CT47B1P0C2W7 299 aaPredicted RBP15.21■□□□□ 0.02
CLIP3-201ENST00000360535 NCKAP5LQ9HCH0 1330 aa15.2■□□□□ 0.02
CLIP3-201ENST00000360535 RRS1Q15050 365 aaKnown RBP15.2■□□□□ 0.02
CLIP3-201ENST00000360535 NUCB1Q02818 461 aa15.19■□□□□ 0.02
CLIP3-201ENST00000360535 FAM43AQ8N2R8 423 aa15.19■□□□□ 0.02
CLIP3-201ENST00000360535 POLKQ9UBT6 870 aa15.19■□□□□ 0.02
CLIP3-201ENST00000360535 POGZQ7Z3K3 1410 aa15.19■□□□□ 0.02
CLIP3-201ENST00000360535 ATAD2Q6PL18 1390 aa15.19■□□□□ 0.02
CLIP3-201ENST00000360535 PNNQ9H307 717 aaKnown RBP15.19■□□□□ 0.02
CLIP3-201ENST00000360535 CYB5RLQ6IPT4 315 aa15.19■□□□□ 0.02
CLIP3-201ENST00000360535 NME9Q86XW9 330 aa15.19■□□□□ 0.02
CLIP3-201ENST00000360535 ABCC3O15438 1527 aa15.18■□□□□ 0.02
CLIP3-201ENST00000360535 CAMSAP1Q5T5Y3 1602 aa15.18■□□□□ 0.02
CLIP3-201ENST00000360535 FCHSD2O94868 740 aa15.18■□□□□ 0.02
CLIP3-201ENST00000360535 SLC52A1Q9NWF4 448 aa15.17■□□□□ 0.02
CLIP3-201ENST00000360535 CD2BP2O95400 341 aaKnown RBP15.16■□□□□ 0.02
CLIP3-201ENST00000360535 RSPH6AQ9H0K4 717 aa15.16■□□□□ 0.02
CLIP3-201ENST00000360535 ZC3H13Q5T200 1668 aaKnown RBP15.16■□□□□ 0.02
CLIP3-201ENST00000360535 FRMPD1Q5SYB0 1578 aa15.16■□□□□ 0.02
CLIP3-201ENST00000360535 VAMP4O75379 141 aa15.16■□□□□ 0.02
CLIP3-201ENST00000360535 NEURL4Q96JN8 1562 aa15.16■□□□□ 0.02
CLIP3-201ENST00000360535 LMTK2Q8IWU2 1503 aa15.16■□□□□ 0.02
CLIP3-201ENST00000360535 TWISTNBQ3B726 338 aaPredicted RBP15.16■□□□□ 0.02
CLIP3-201ENST00000360535 MBIPQ9NS73 344 aa15.16■□□□□ 0.02
CLIP3-201ENST00000360535 KRT24Q2M2I5 525 aa15.15■□□□□ 0.02
CLIP3-201ENST00000360535 C8orf58Q8NAV2 365 aa15.15■□□□□ 0.02
CLIP3-201ENST00000360535 ZBTB7BO15156 539 aaPredicted RBP15.15■□□□□ 0.02
CLIP3-201ENST00000360535 NFE2L2Q16236 605 aa15.15■□□□□ 0.02
CLIP3-201ENST00000360535 TNPO1Q92973 898 aaKnown RBP15.15■□□□□ 0.02
CLIP3-201ENST00000360535 PUS7Q96PZ0 661 aaKnown RBP15.15■□□□□ 0.02
CLIP3-201ENST00000360535 ARHGEF28Q8N1W1 1705 aaKnown RBP15.15■□□□□ 0.02
CLIP3-201ENST00000360535 TBC1D9Q6ZT07 1266 aa15.14■□□□□ 0.01
CLIP3-201ENST00000360535 TXNDC2Q86VQ3 553 aa15.14■□□□□ 0.01
CLIP3-201ENST00000360535 IL16Q14005 1332 aa15.14■□□□□ 0.01
CLIP3-201ENST00000360535 SIGLEC1Q9BZZ2 1709 aa15.14■□□□□ 0.01
CLIP3-201ENST00000360535 C16orf71Q8IYS4 520 aaPredicted RBP15.14■□□□□ 0.01
CLIP3-201ENST00000360535 MRPL50Q8N5N7 158 aaKnown RBP15.14■□□□□ 0.01
CLIP3-201ENST00000360535 YTHDC2Q9H6S0 1430 aaKnown RBP15.14■□□□□ 0.01
CLIP3-201ENST00000360535 ALDH1L2Q3SY69 923 aa15.13■□□□□ 0.01
CLIP3-201ENST00000360535 NAP1L5Q96NT1 182 aaPredicted RBP15.13■□□□□ 0.01
CLIP3-201ENST00000360535 YEATS2Q9ULM3 1422 aa15.13■□□□□ 0.01
CLIP3-201ENST00000360535 NEXMIFQ5QGS0 1516 aa15.13■□□□□ 0.01
CLIP3-201ENST00000360535 SIRT2Q8IXJ6 389 aa15.12■□□□□ 0.01
CLIP3-201ENST00000360535 NCLP19338 710 aaKnown RBP15.12■□□□□ 0.01
CLIP3-201ENST00000360535 GNAI1P63096 354 aa15.12■□□□□ 0.01
CLIP3-201ENST00000360535 MLH3Q9UHC1 1453 aa15.12■□□□□ 0.01
CLIP3-201ENST00000360535 PLPPR3Q6T4P5 718 aa15.11■□□□□ 0.01
CLIP3-201ENST00000360535 HECW2Q9P2P5 1572 aa15.11■□□□□ 0.01
CLIP3-201ENST00000360535 PPIP5K1Q6PFW1 1433 aa15.11■□□□□ 0.01
CLIP3-201ENST00000360535 DDX11L8A8MPP1 907 aa15.11■□□□□ 0.01
CLIP3-201ENST00000360535 SMARCA5O60264 1052 aaPredicted RBP15.1■□□□□ 0.01
CLIP3-201ENST00000360535 ADGRB2O60241 1585 aa15.1■□□□□ 0.01
CLIP3-201ENST00000360535 BMP2KLQ5H9B9 411 aa15.1■□□□□ 0.01
CLIP3-201ENST00000360535 MYO5BQ9ULV0 1848 aa15.1■□□□□ 0.01
CLIP3-201ENST00000360535 MIS18AQ9NYP9 233 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms