RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 EPS15P42566 896 aa14.93□□□□□ -0.02
COL6A3-203ENST00000353578 OFD1O75665 1012 aa14.92□□□□□ -0.02
COL6A3-203ENST00000353578 ENOX2Q16206 610 aaKnown RBP14.92□□□□□ -0.02
COL6A3-203ENST00000353578 USP47Q96K76 1375 aa14.92□□□□□ -0.02
COL6A3-203ENST00000353578 STIM1Q13586 685 aa14.92□□□□□ -0.02
COL6A3-203ENST00000353578 RGL3Q3MIN7 710 aa14.92□□□□□ -0.02
COL6A3-203ENST00000353578 DNAJC21Q5F1R6 531 aaKnown RBP14.91□□□□□ -0.02
COL6A3-203ENST00000353578 SMC1AQ14683 1233 aaKnown RBP14.91□□□□□ -0.02
COL6A3-203ENST00000353578 CFAP45Q9UL16 551 aa14.91□□□□□ -0.02
COL6A3-203ENST00000353578 CCDC181Q5TID7 509 aa14.91□□□□□ -0.02
COL6A3-203ENST00000353578 HMGB1P1B2RPK0 211 aaPredicted RBP14.91□□□□□ -0.02
COL6A3-203ENST00000353578 GPATCH11Q8N954 259 aa14.91□□□□□ -0.02
COL6A3-203ENST00000353578 A0A0G2JS52 829 aa14.91□□□□□ -0.02
COL6A3-203ENST00000353578 SH2D4BQ5SQS7 431 aa14.91□□□□□ -0.02
COL6A3-203ENST00000353578 RASSF4Q9H2L5 321 aa14.91□□□□□ -0.02
COL6A3-203ENST00000353578 CCDC171Q6TFL3 1326 aa14.91□□□□□ -0.02
COL6A3-203ENST00000353578 PRPF40AO75400 957 aaKnown RBP14.91□□□□□ -0.02
COL6A3-203ENST00000353578 SFPQP23246 707 aaKnown RBP eCLIP14.91□□□□□ -0.02
COL6A3-203ENST00000353578 GABPB1Q06547 395 aaPredicted RBP14.91□□□□□ -0.02
COL6A3-203ENST00000353578 STAC3Q96MF2 364 aa14.91□□□□□ -0.02
COL6A3-203ENST00000353578 DDX12PQ92771 950 aa14.9□□□□□ -0.02
COL6A3-203ENST00000353578 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.9□□□□□ -0.02
COL6A3-203ENST00000353578 HSPA4P34932 840 aa14.9□□□□□ -0.02
COL6A3-203ENST00000353578 UVSSAQ2YD98 709 aa14.9□□□□□ -0.02
COL6A3-203ENST00000353578 SLC4A3P48751 1232 aa14.9□□□□□ -0.02
COL6A3-203ENST00000353578 KRT85P78386 507 aa14.9□□□□□ -0.02
COL6A3-203ENST00000353578 PPP4R3BQ5MIZ7 849 aa14.9□□□□□ -0.02
COL6A3-203ENST00000353578 RSRC1Q96IZ7 334 aaKnown RBP14.9□□□□□ -0.02
COL6A3-203ENST00000353578 VPS37CA5D8V6 355 aaPredicted RBP14.9□□□□□ -0.02
COL6A3-203ENST00000353578 K7ELQ4 463 aaPredicted RBP14.9□□□□□ -0.02
COL6A3-203ENST00000353578 MAGEC2Q9UBF1 373 aaPredicted RBP14.9□□□□□ -0.02
COL6A3-203ENST00000353578 HSP90AB2PQ58FF8 381 aa14.89□□□□□ -0.03
COL6A3-203ENST00000353578 EHBP1Q8NDI1 1231 aa14.89□□□□□ -0.03
COL6A3-203ENST00000353578 TNMDQ9H2S6 317 aa14.89□□□□□ -0.03
COL6A3-203ENST00000353578 RBM25P49756 843 aaKnown RBP14.89□□□□□ -0.03
COL6A3-203ENST00000353578 TRDNQ13061 729 aa14.89□□□□□ -0.03
COL6A3-203ENST00000353578 TTC31Q49AM3 519 aaPredicted RBP14.89□□□□□ -0.03
COL6A3-203ENST00000353578 ANKS4BQ8N8V4 417 aa14.89□□□□□ -0.03
COL6A3-203ENST00000353578 PRM3Q9NNZ6 103 aa14.88□□□□□ -0.03
COL6A3-203ENST00000353578 MPHOSPH10O00566 681 aaKnown RBP14.88□□□□□ -0.03
COL6A3-203ENST00000353578 KIF3CO14782 793 aa14.88□□□□□ -0.03
COL6A3-203ENST00000353578 CENPHQ9H3R5 247 aa14.88□□□□□ -0.03
COL6A3-203ENST00000353578 GCOM1H8Y6P7 765 aaPredicted RBP14.88□□□□□ -0.03
COL6A3-203ENST00000353578 MYZAPP0CAP1 466 aa14.88□□□□□ -0.03
COL6A3-203ENST00000353578 PDILTQ8N807 584 aa14.88□□□□□ -0.03
COL6A3-203ENST00000353578 ANO2Q9NQ90 1003 aa14.88□□□□□ -0.03
COL6A3-203ENST00000353578 APBB1O00213 710 aa14.87□□□□□ -0.03
COL6A3-203ENST00000353578 CTAGE5O15320 804 aa14.87□□□□□ -0.03
COL6A3-203ENST00000353578 CCDC175P0C221 793 aa14.87□□□□□ -0.03
COL6A3-203ENST00000353578 C6orf163Q5TEZ5 329 aa14.87□□□□□ -0.03
COL6A3-203ENST00000353578 GCC1Q96CN9 775 aa14.86□□□□□ -0.03
COL6A3-203ENST00000353578 RNF168Q8IYW5 571 aaPredicted RBP14.86□□□□□ -0.03
COL6A3-203ENST00000353578 A0A1B0GUL7 405 aa14.86□□□□□ -0.03
COL6A3-203ENST00000353578 MARCH6O60337 910 aa14.86□□□□□ -0.03
COL6A3-203ENST00000353578 KIF5CO60282 957 aa14.86□□□□□ -0.03
COL6A3-203ENST00000353578 CCDC183Q5T5S1 534 aa14.86□□□□□ -0.03
COL6A3-203ENST00000353578 FOXD4L5Q5VV16 416 aaPredicted RBP14.86□□□□□ -0.03
COL6A3-203ENST00000353578 FOXD4L4Q8WXT5 416 aaPredicted RBP14.86□□□□□ -0.03
COL6A3-203ENST00000353578 STAMBPO95630 424 aa14.86□□□□□ -0.03
COL6A3-203ENST00000353578 NOL8Q76FK4 1167 aaKnown RBP14.86□□□□□ -0.03
COL6A3-203ENST00000353578 TAOK2Q9UL54 1235 aa14.86□□□□□ -0.03
COL6A3-203ENST00000353578 BRD2P25440 801 aaKnown RBP14.85□□□□□ -0.03
COL6A3-203ENST00000353578 C14orf37Q86TY3 774 aa14.85□□□□□ -0.03
COL6A3-203ENST00000353578 USH1CQ9Y6N9 552 aa14.85□□□□□ -0.03
COL6A3-203ENST00000353578 ARHGAP29Q52LW3 1261 aa14.85□□□□□ -0.03
COL6A3-203ENST00000353578 RNF214Q8ND24 703 aa14.85□□□□□ -0.03
COL6A3-203ENST00000353578 FMNL3Q8IVF7 1028 aa14.84□□□□□ -0.03
COL6A3-203ENST00000353578 CBX1P83916 185 aa14.84□□□□□ -0.03
COL6A3-203ENST00000353578 AMOTL1Q8IY63 956 aa14.84□□□□□ -0.03
COL6A3-203ENST00000353578 SMARCC1Q92922 1105 aaPredicted RBP14.84□□□□□ -0.03
COL6A3-203ENST00000353578 GBP6Q6ZN66 633 aa14.84□□□□□ -0.03
COL6A3-203ENST00000353578 NSRP1Q9H0G5 558 aaKnown RBP14.84□□□□□ -0.03
COL6A3-203ENST00000353578 MAP2K1Q02750 393 aaPredicted RBP14.83□□□□□ -0.03
COL6A3-203ENST00000353578 RILPL2Q969X0 211 aa14.83□□□□□ -0.03
COL6A3-203ENST00000353578 NAA15Q9BXJ9 866 aaKnown RBP14.83□□□□□ -0.03
COL6A3-203ENST00000353578 ZHX1Q9UKY1 873 aaPredicted RBP14.83□□□□□ -0.03
COL6A3-203ENST00000353578 DDX46Q7L014 1031 aaKnown RBP14.83□□□□□ -0.03
COL6A3-203ENST00000353578 OGFRQ9NZT2 677 aa14.83□□□□□ -0.03
COL6A3-203ENST00000353578 NPHP1O15259 732 aa14.83□□□□□ -0.04
COL6A3-203ENST00000353578 MAP3K11Q16584 847 aa14.83□□□□□ -0.04
COL6A3-203ENST00000353578 POTEDQ86YR6 584 aa14.83□□□□□ -0.04
COL6A3-203ENST00000353578 NUTM1Q86Y26 1132 aa14.83□□□□□ -0.04
COL6A3-203ENST00000353578 FMNL2Q96PY5 1086 aa14.83□□□□□ -0.04
COL6A3-203ENST00000353578 SERPINC1P01008 464 aa14.83□□□□□ -0.04
COL6A3-203ENST00000353578 CCDC38Q502W7 563 aa14.83□□□□□ -0.04
COL6A3-203ENST00000353578 MPHOSPH9Q99550 1183 aa14.83□□□□□ -0.04
COL6A3-203ENST00000353578 SUDS3Q9H7L9 328 aaPredicted RBP14.83□□□□□ -0.04
COL6A3-203ENST00000353578 MYCBPQ99417 103 aaPredicted RBP14.83□□□□□ -0.04
COL6A3-203ENST00000353578 ARFGAP3Q9NP61 516 aa14.82□□□□□ -0.04
COL6A3-203ENST00000353578 CCDC9Q9Y3X0 531 aaKnown RBP14.82□□□□□ -0.04
COL6A3-203ENST00000353578 MRVI1Q9Y6F6 885 aa14.82□□□□□ -0.04
COL6A3-203ENST00000353578 KIF21BO75037 1637 aa14.82□□□□□ -0.04
COL6A3-203ENST00000353578 ANKRD18BA2A2Z9 1011 aa14.81□□□□□ -0.04
COL6A3-203ENST00000353578 STMN4Q9H169 189 aaPredicted RBP14.81□□□□□ -0.04
COL6A3-203ENST00000353578 ERC1Q8IUD2 1116 aa14.81□□□□□ -0.04
COL6A3-203ENST00000353578 SRPK2P78362 688 aaKnown RBP14.81□□□□□ -0.04
COL6A3-203ENST00000353578 DAAM2Q86T65 1068 aa14.81□□□□□ -0.04
COL6A3-203ENST00000353578 EPB41L2O43491 1005 aaKnown RBP14.81□□□□□ -0.04
COL6A3-203ENST00000353578 CEP112Q8N8E3 955 aa14.81□□□□□ -0.04
COL6A3-203ENST00000353578 ZSCAN31Q96LW9 406 aaPredicted RBP14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms