RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 CSPP1Q1MSJ5 1256 aa18.24■□□□□ 0.51
COL17A1-201ENST00000353479 FAM184AQ8NB25 1140 aa18.24■□□□□ 0.51
COL17A1-201ENST00000353479 EIF4G3O43432 1585 aaKnown RBP18.24■□□□□ 0.51
COL17A1-201ENST00000353479 BCAR3O75815 825 aa18.24■□□□□ 0.51
COL17A1-201ENST00000353479 C11orf95C9JLR9 678 aaPredicted RBP18.23■□□□□ 0.51
COL17A1-201ENST00000353479 AAMPQ13685 434 aa18.23■□□□□ 0.51
COL17A1-201ENST00000353479 NME9Q86XW9 330 aa18.23■□□□□ 0.51
COL17A1-201ENST00000353479 SYCP2Q9BX26 1530 aa18.23■□□□□ 0.51
COL17A1-201ENST00000353479 WASLO00401 505 aaPredicted RBP18.23■□□□□ 0.51
COL17A1-201ENST00000353479 KCNH5Q8NCM2 988 aa18.23■□□□□ 0.51
COL17A1-201ENST00000353479 C1orf115Q9H7X2 142 aa18.22■□□□□ 0.51
COL17A1-201ENST00000353479 FCHSD2O94868 740 aa18.22■□□□□ 0.51
COL17A1-201ENST00000353479 SYNE3Q6ZMZ3 975 aa18.22■□□□□ 0.51
COL17A1-201ENST00000353479 WDR63Q8IWG1 891 aa18.22■□□□□ 0.51
COL17A1-201ENST00000353479 RAD21O60216 631 aa18.22■□□□□ 0.51
COL17A1-201ENST00000353479 SURF6O75683 361 aaKnown RBP18.22■□□□□ 0.51
COL17A1-201ENST00000353479 SF3A1Q15459 793 aaKnown RBP18.22■□□□□ 0.51
COL17A1-201ENST00000353479 CCDC34Q96HJ3 373 aa18.22■□□□□ 0.51
COL17A1-201ENST00000353479 AKAP17AQ02040 695 aaKnown RBP18.21■□□□□ 0.51
COL17A1-201ENST00000353479 VPS53Q5VIR6 699 aa18.21■□□□□ 0.51
COL17A1-201ENST00000353479 ZNF428Q96B54 188 aa18.21■□□□□ 0.51
COL17A1-201ENST00000353479 TRIM34Q9BYJ4 488 aa18.21■□□□□ 0.51
COL17A1-201ENST00000353479 PHF8Q9UPP1 1060 aa18.21■□□□□ 0.51
COL17A1-201ENST00000353479 FOXO3O43524 673 aa18.21■□□□□ 0.51
COL17A1-201ENST00000353479 RPRD2Q5VT52 1461 aaKnown RBP18.21■□□□□ 0.51
COL17A1-201ENST00000353479 TEX14Q8IWB6 1497 aa18.21■□□□□ 0.51
COL17A1-201ENST00000353479 MARCH6O60337 910 aa18.2■□□□□ 0.5
COL17A1-201ENST00000353479 FOXD4L6Q3SYB3 417 aaPredicted RBP18.2■□□□□ 0.5
COL17A1-201ENST00000353479 INTS3Q68E01 1043 aaKnown RBP18.2■□□□□ 0.5
COL17A1-201ENST00000353479 FOXD4L3Q6VB84 417 aaPredicted RBP18.2■□□□□ 0.5
COL17A1-201ENST00000353479 MSNP26038 577 aaKnown RBP18.2■□□□□ 0.5
COL17A1-201ENST00000353479 NAP1L5Q96NT1 182 aaPredicted RBP18.2■□□□□ 0.5
COL17A1-201ENST00000353479 C14orf93Q9H972 538 aaKnown RBP18.2■□□□□ 0.5
COL17A1-201ENST00000353479 TNRQ92752 1358 aa18.19■□□□□ 0.5
COL17A1-201ENST00000353479 ITSN2Q9NZM3 1697 aa18.19■□□□□ 0.5
COL17A1-201ENST00000353479 MYL6BP14649 208 aa18.19■□□□□ 0.5
COL17A1-201ENST00000353479 PTPRKQ15262 1439 aa18.19■□□□□ 0.5
COL17A1-201ENST00000353479 DEKP35659 375 aaKnown RBP18.19■□□□□ 0.5
COL17A1-201ENST00000353479 BTBD11A6QL63 1104 aa18.18■□□□□ 0.5
COL17A1-201ENST00000353479 RNF20Q5VTR2 975 aa18.18■□□□□ 0.5
COL17A1-201ENST00000353479 A2MP01023 1474 aa18.18■□□□□ 0.5
COL17A1-201ENST00000353479 AMER1Q5JTC6 1135 aaPredicted RBP18.18■□□□□ 0.5
COL17A1-201ENST00000353479 WASHC4Q2M389 1173 aa18.18■□□□□ 0.5
COL17A1-201ENST00000353479 TRDNQ13061 729 aa18.17■□□□□ 0.5
COL17A1-201ENST00000353479 NFE2L2Q16236 605 aa18.17■□□□□ 0.5
COL17A1-201ENST00000353479 CLASRPQ8N2M8 674 aaKnown RBP18.17■□□□□ 0.5
COL17A1-201ENST00000353479 CHMP4CQ96CF2 233 aa18.17■□□□□ 0.5
COL17A1-201ENST00000353479 SCAF11Q99590 1463 aaKnown RBP18.17■□□□□ 0.5
COL17A1-201ENST00000353479 DUOX2Q9NRD8 1548 aa18.17■□□□□ 0.5
COL17A1-201ENST00000353479 ZNF518AQ6AHZ1 1483 aa18.17■□□□□ 0.5
COL17A1-201ENST00000353479 TRAPPC8Q9Y2L5 1435 aa18.17■□□□□ 0.5
COL17A1-201ENST00000353479 GNAI2P04899 355 aa18.16■□□□□ 0.5
COL17A1-201ENST00000353479 TMPOP42166 694 aaKnown RBP18.16■□□□□ 0.5
COL17A1-201ENST00000353479 GLIPR1L2Q4G1C9 344 aa18.16■□□□□ 0.5
COL17A1-201ENST00000353479 MCTP1Q6DN14 999 aa18.16■□□□□ 0.5
COL17A1-201ENST00000353479 CPLX2Q6PUV4 134 aaKnown RBP18.16■□□□□ 0.5
COL17A1-201ENST00000353479 PDE3AQ14432 1141 aa18.16■□□□□ 0.5
COL17A1-201ENST00000353479 EMILIN1Q9Y6C2 1016 aa18.16■□□□□ 0.5
COL17A1-201ENST00000353479 WDR62O43379 1518 aa18.15■□□□□ 0.5
COL17A1-201ENST00000353479 GNAT3A8MTJ3 354 aa18.15■□□□□ 0.5
COL17A1-201ENST00000353479 USHBP1Q8N6Y0 703 aa18.15■□□□□ 0.5
COL17A1-201ENST00000353479 TPM4P67936 248 aa18.15■□□□□ 0.5
COL17A1-201ENST00000353479 CCDC27Q2M243 656 aa18.15■□□□□ 0.5
COL17A1-201ENST00000353479 CHAF1AQ13111 956 aaPredicted RBP18.14■□□□□ 0.5
COL17A1-201ENST00000353479 THUMPD2Q9BTF0 503 aaKnown RBP18.14■□□□□ 0.49
COL17A1-201ENST00000353479 MIS18AQ9NYP9 233 aa18.14■□□□□ 0.49
COL17A1-201ENST00000353479 CPLX1O14810 134 aa18.14■□□□□ 0.49
COL17A1-201ENST00000353479 WWC1Q8IX03 1113 aa18.14■□□□□ 0.49
COL17A1-201ENST00000353479 FYB1O15117 783 aa18.13■□□□□ 0.49
COL17A1-201ENST00000353479 CCT4P50991 539 aaKnown RBP18.13■□□□□ 0.49
COL17A1-201ENST00000353479 MCM10Q7L590 875 aa18.13■□□□□ 0.49
COL17A1-201ENST00000353479 SRCIN1Q9C0H9 1055 aa18.13■□□□□ 0.49
COL17A1-201ENST00000353479 FSD1Q9BTV5 496 aa18.13■□□□□ 0.49
COL17A1-201ENST00000353479 CDC45O75419 566 aa18.13■□□□□ 0.49
COL17A1-201ENST00000353479 CT47B1P0C2W7 299 aaPredicted RBP18.13■□□□□ 0.49
COL17A1-201ENST00000353479 CREBRFQ8IUR6 639 aa18.13■□□□□ 0.49
COL17A1-201ENST00000353479 NFXL1Q6ZNB6 911 aa18.12■□□□□ 0.49
COL17A1-201ENST00000353479 ATF7IPQ6VMQ6 1270 aa18.12■□□□□ 0.49
COL17A1-201ENST00000353479 DNAJC2Q99543 621 aaKnown RBP18.12■□□□□ 0.49
COL17A1-201ENST00000353479 ATP6V1DQ9Y5K8 247 aa18.12■□□□□ 0.49
COL17A1-201ENST00000353479 GOLGA6L3A6NEY3 463 aa18.12■□□□□ 0.49
COL17A1-201ENST00000353479 DHX16O60231 1041 aaKnown RBP18.12■□□□□ 0.49
COL17A1-201ENST00000353479 CNTROBQ8N137 903 aa18.11■□□□□ 0.49
COL17A1-201ENST00000353479 DCTN1Q14203 1278 aa18.11■□□□□ 0.49
COL17A1-201ENST00000353479 PDZRN3Q9UPQ7 1066 aa18.11■□□□□ 0.49
COL17A1-201ENST00000353479 NINLQ9Y2I6 1382 aa18.1■□□□□ 0.49
COL17A1-201ENST00000353479 TRIM29Q14134 588 aa18.1■□□□□ 0.49
COL17A1-201ENST00000353479 CNNM1Q9NRU3 951 aa18.1■□□□□ 0.49
COL17A1-201ENST00000353479 ADAMTS2O95450 1211 aa18.1■□□□□ 0.49
COL17A1-201ENST00000353479 C22orf23Q9BZE7 217 aa18.1■□□□□ 0.49
COL17A1-201ENST00000353479 DISP3Q9P2K9 1392 aa18.1■□□□□ 0.49
COL17A1-201ENST00000353479 ERICH2A1L162 156 aa18.1■□□□□ 0.49
COL17A1-201ENST00000353479 DDX11L8A8MPP1 907 aa18.1■□□□□ 0.49
COL17A1-201ENST00000353479 SIL1Q9H173 461 aa18.09■□□□□ 0.49
COL17A1-201ENST00000353479 SF3B2Q13435 895 aaKnown RBP18.09■□□□□ 0.49
COL17A1-201ENST00000353479 KRT28Q7Z3Y7 464 aa18.09■□□□□ 0.49
COL17A1-201ENST00000353479 UHRF1BP1LA0JNW5 1464 aa18.08■□□□□ 0.48
COL17A1-201ENST00000353479 ERC1Q8IUD2 1116 aa18.08■□□□□ 0.48
COL17A1-201ENST00000353479 RALYLQ86SE5 291 aaKnown RBP18.08■□□□□ 0.48
COL17A1-201ENST00000353479 GCC1Q96CN9 775 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms