RNA–Protein interactions for RNA: ENST00000349379.5

SNX3-202, Transcript of sorting nexin 3, humanhuman

TSL 2 BASIC

Gene SNX3, Length 890 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3-202ENST00000349379 PHRF1Q9P1Y6 1649 aaKnown RBP31.17■■■□□ 2.58
SNX3-202ENST00000349379 USP6P35125 1406 aa31.17■■■□□ 2.58
SNX3-202ENST00000349379 C8orf37Q96NL8 207 aa31.17■■■□□ 2.58
SNX3-202ENST00000349379 AFF2P51816 1311 aa31.17■■■□□ 2.58
SNX3-202ENST00000349379 NRKQ7Z2Y5 1582 aa31.17■■■□□ 2.58
SNX3-202ENST00000349379 ZNF772Q68DY9 489 aaPredicted RBP31.16■■■□□ 2.58
SNX3-202ENST00000349379 LMOD2Q6P5Q4 547 aa31.16■■■□□ 2.58
SNX3-202ENST00000349379 SSH2Q76I76 1423 aa31.15■■■□□ 2.58
SNX3-202ENST00000349379 SLC24A1O60721 1099 aa31.15■■■□□ 2.58
SNX3-202ENST00000349379 CPSF1Q10570 1443 aaKnown RBP31.15■■■□□ 2.58
SNX3-202ENST00000349379 TNKS1BP1Q9C0C2 1729 aaKnown RBP31.14■■■□□ 2.58
SNX3-202ENST00000349379 PAK3O75914 559 aaPredicted RBP31.13■■■□□ 2.57
SNX3-202ENST00000349379 CABLES1Q8TDN4 633 aa31.13■■■□□ 2.57
SNX3-202ENST00000349379 FNBP4Q8N3X1 1017 aaPredicted RBP31.12■■■□□ 2.57
SNX3-202ENST00000349379 PLCH1Q4KWH8 1693 aa31.11■■■□□ 2.57
SNX3-202ENST00000349379 NGLY1Q96IV0 654 aa31.11■■■□□ 2.57
SNX3-202ENST00000349379 CD163L1Q9NR16 1453 aa31.11■■■□□ 2.57
SNX3-202ENST00000349379 NWD2Q9ULI1 1742 aa31.1■■■□□ 2.57
SNX3-202ENST00000349379 PIK3C2AO00443 1686 aa31.1■■■□□ 2.57
SNX3-202ENST00000349379 SLIT2O94813 1529 aa31.08■■■□□ 2.57
SNX3-202ENST00000349379 ZNF692Q9BU19 519 aaPredicted RBP31.07■■■□□ 2.56
SNX3-202ENST00000349379 BCL9LQ86UU0 1499 aa31.06■■■□□ 2.56
SNX3-202ENST00000349379 COL14A1Q05707 1796 aaKnown RBP31.05■■■□□ 2.56
SNX3-202ENST00000349379 HAP1P54257 671 aaPredicted RBP31.04■■■□□ 2.56
SNX3-202ENST00000349379 NINLQ9Y2I6 1382 aa31.04■■■□□ 2.56
SNX3-202ENST00000349379 TMF1P82094 1093 aa31.03■■■□□ 2.56
SNX3-202ENST00000349379 ABTB2Q8N961 1025 aa31.03■■■□□ 2.56
SNX3-202ENST00000349379 USP21Q9UK80 565 aa31.03■■■□□ 2.56
SNX3-202ENST00000349379 NRAPQ86VF7 1730 aa31.03■■■□□ 2.56
SNX3-202ENST00000349379 USP19O94966 1318 aa31.02■■■□□ 2.56
SNX3-202ENST00000349379 PLEKHG5O94827 1062 aa31.02■■■□□ 2.56
SNX3-202ENST00000349379 USP54Q70EL1 1684 aa31.02■■■□□ 2.56
SNX3-202ENST00000349379 ATRNO75882 1429 aa31.01■■■□□ 2.55
SNX3-202ENST00000349379 SLC12A5Q9H2X9 1139 aa31.01■■■□□ 2.55
SNX3-202ENST00000349379 KTN1Q86UP2 1357 aaKnown RBP31.01■■■□□ 2.55
SNX3-202ENST00000349379 MYOM1P52179 1685 aa31■■■□□ 2.55
SNX3-202ENST00000349379 TTC21BQ7Z4L5 1316 aa30.99■■■□□ 2.55
SNX3-202ENST00000349379 SLIT3O75094 1523 aa30.99■■■□□ 2.55
SNX3-202ENST00000349379 NUTM2GQ5VZR2 741 aa30.99■■■□□ 2.55
SNX3-202ENST00000349379 CDK12Q9NYV4 1490 aaPredicted RBP30.98■■■□□ 2.55
SNX3-202ENST00000349379 TMC1Q8TDI8 760 aa30.98■■■□□ 2.55
SNX3-202ENST00000349379 QTRT2Q9H974 415 aaKnown RBP30.98■■■□□ 2.55
SNX3-202ENST00000349379 TTC21AQ8NDW8 1320 aa30.98■■■□□ 2.55
SNX3-202ENST00000349379 A0A1W2PP64 1363 aa30.97■■■□□ 2.55
SNX3-202ENST00000349379 NLRP13Q86W25 1043 aa30.96■■■□□ 2.55
SNX3-202ENST00000349379 FAM83GA6ND36 823 aa30.95■■■□□ 2.55
SNX3-202ENST00000349379 EIF4G2P78344 907 aaKnown RBP eCLIP30.95■■■□□ 2.55
SNX3-202ENST00000349379 TRPC5Q9UL62 973 aaPredicted RBP30.95■■■□□ 2.55
SNX3-202ENST00000349379 RXRBP28702 533 aa30.94■■■□□ 2.54
SNX3-202ENST00000349379 EDC4Q6P2E9 1401 aaKnown RBP30.94■■■□□ 2.54
SNX3-202ENST00000349379 CDCA8Q53HL2 280 aa30.93■■■□□ 2.54
SNX3-202ENST00000349379 HDGFL2Q7Z4V5 671 aaPredicted RBP30.93■■■□□ 2.54
SNX3-202ENST00000349379 UNC5CLQ8IV45 518 aa30.93■■■□□ 2.54
SNX3-202ENST00000349379 TERF2IPQ9NYB0 399 aa30.93■■■□□ 2.54
SNX3-202ENST00000349379 RBM6P78332 1123 aaKnown RBP30.92■■■□□ 2.54
SNX3-202ENST00000349379 KIAA0232Q92628 1395 aa30.92■■■□□ 2.54
SNX3-202ENST00000349379 LMO7Q8WWI1 1683 aa30.91■■■□□ 2.54
SNX3-202ENST00000349379 HSPA5P11021 654 aaKnown RBP30.91■■■□□ 2.54
SNX3-202ENST00000349379 CPDO75976 1380 aa30.91■■■□□ 2.54
SNX3-202ENST00000349379 NLRP6P59044 892 aa30.9■■■□□ 2.54
SNX3-202ENST00000349379 GLI3P10071 1580 aa30.9■■■□□ 2.54
SNX3-202ENST00000349379 ANKRD36BQ8N2N9 1353 aa30.9■■■□□ 2.54
SNX3-202ENST00000349379 USP31Q70CQ4 1352 aa30.88■■■□□ 2.53
SNX3-202ENST00000349379 GCP02774 474 aa30.87■■■□□ 2.53
SNX3-202ENST00000349379 PRDM11Q9NQV5 511 aa30.87■■■□□ 2.53
SNX3-202ENST00000349379 RGS12O14924 1447 aa30.86■■■□□ 2.53
SNX3-202ENST00000349379 COL18A1P39060 1754 aa30.85■■■□□ 2.53
SNX3-202ENST00000349379 ZC3H6P61129 1189 aaKnown RBP30.85■■■□□ 2.53
SNX3-202ENST00000349379 NFAT5O94916 1531 aa30.84■■■□□ 2.53
SNX3-202ENST00000349379 BTG4Q9NY30 223 aa30.84■■■□□ 2.53
SNX3-202ENST00000349379 VPS72Q15906 364 aa30.83■■■□□ 2.53
SNX3-202ENST00000349379 SUGP2Q8IX01 1082 aaKnown RBP eCLIP30.83■■■□□ 2.53
SNX3-202ENST00000349379 GJD4Q96KN9 370 aaPredicted RBP30.83■■■□□ 2.53
SNX3-202ENST00000349379 CAMTA1Q9Y6Y1 1673 aa30.81■■■□□ 2.52
SNX3-202ENST00000349379 NME9Q86XW9 330 aa30.81■■■□□ 2.52
SNX3-202ENST00000349379 OVOS2A0A0J9YW53 1432 aa30.81■■■□□ 2.52
SNX3-202ENST00000349379 OVOS2Q6IE36 1432 aa30.81■■■□□ 2.52
SNX3-202ENST00000349379 CHRNA2Q15822 529 aa30.8■■■□□ 2.52
SNX3-202ENST00000349379 KIF20BQ96Q89 1820 aa30.8■■■□□ 2.52
SNX3-202ENST00000349379 ZRANB1Q9UGI0 708 aa30.79■■■□□ 2.52
SNX3-202ENST00000349379 LTN1O94822 1766 aa30.78■■■□□ 2.52
SNX3-202ENST00000349379 RGPD5Q99666 1765 aa30.78■■■□□ 2.52
SNX3-202ENST00000349379 KCNH5Q8NCM2 988 aa30.77■■■□□ 2.52
SNX3-202ENST00000349379 BRWD3Q6RI45 1802 aa30.75■■■□□ 2.51
SNX3-202ENST00000349379 ABCC6O95255 1503 aa30.74■■■□□ 2.51
SNX3-202ENST00000349379 AATKQ6ZMQ8 1374 aa30.74■■■□□ 2.51
SNX3-202ENST00000349379 COL5A2P05997 1499 aaPredicted RBP30.72■■■□□ 2.51
SNX3-202ENST00000349379 ARHGEF25Q86VW2 580 aa30.72■■■□□ 2.51
SNX3-202ENST00000349379 C11orf95C9JLR9 678 aaPredicted RBP30.7■■■□□ 2.51
SNX3-202ENST00000349379 SPATA31A5Q5VU36 1347 aa30.7■■■□□ 2.5
SNX3-202ENST00000349379 SPATA31A7Q8IWB4 1347 aa30.7■■■□□ 2.5
SNX3-202ENST00000349379 CARD14Q9BXL6 1004 aa30.69■■■□□ 2.5
SNX3-202ENST00000349379 ONECUT3O60422 494 aaPredicted RBP30.68■■■□□ 2.5
SNX3-202ENST00000349379 THSD7AQ9UPZ6 1657 aa30.68■■■□□ 2.5
SNX3-202ENST00000349379 CCDC9Q9Y3X0 531 aaKnown RBP30.67■■■□□ 2.5
SNX3-202ENST00000349379 NSD3Q9BZ95 1437 aa30.66■■■□□ 2.5
SNX3-202ENST00000349379 FYB1O15117 783 aa30.65■■■□□ 2.5
SNX3-202ENST00000349379 SOX12O15370 315 aa30.65■■■□□ 2.5
SNX3-202ENST00000349379 STRN4Q9NRL3 753 aa30.64■■■□□ 2.5
SNX3-202ENST00000349379 SPATA31A1Q5TZJ5 1347 aa30.64■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms