RNA–Protein interactions for RNA: ENST00000346501.8

TSPAN4-201, Transcript of tetraspanin 4, humanhuman

TSL 3 BASIC

Gene TSPAN4, Length 882 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-201ENST00000346501 CABLES1Q8TDN4 633 aa22.23■■□□□ 1.15
TSPAN4-201ENST00000346501 CABP1Q9NZU7 370 aa22.23■■□□□ 1.15
TSPAN4-201ENST00000346501 ATAD2Q6PL18 1390 aa22.23■■□□□ 1.15
TSPAN4-201ENST00000346501 TOPAZ1Q8N9V7 1692 aa22.22■■□□□ 1.15
TSPAN4-201ENST00000346501 BRD4O60885 1362 aaPredicted RBP22.22■■□□□ 1.15
TSPAN4-201ENST00000346501 TRPM3Q9HCF6 1732 aaPredicted RBP22.2■■□□□ 1.14
TSPAN4-201ENST00000346501 ABTB2Q8N961 1025 aa22.19■■□□□ 1.14
TSPAN4-201ENST00000346501 ZNF692Q9BU19 519 aaPredicted RBP22.19■■□□□ 1.14
TSPAN4-201ENST00000346501 MARF1Q9Y4F3 1742 aaKnown RBP22.19■■□□□ 1.14
TSPAN4-201ENST00000346501 ALS2Q96Q42 1657 aa22.17■■□□□ 1.14
TSPAN4-201ENST00000346501 NLRP13Q86W25 1043 aa22.16■■□□□ 1.14
TSPAN4-201ENST00000346501 UNC5CLQ8IV45 518 aa22.16■■□□□ 1.14
TSPAN4-201ENST00000346501 ST20-MTHFSA0A0A6YYL1 179 aa22.15■■□□□ 1.14
TSPAN4-201ENST00000346501 CDK12Q9NYV4 1490 aaPredicted RBP22.15■■□□□ 1.14
TSPAN4-201ENST00000346501 TMC1Q8TDI8 760 aa22.14■■□□□ 1.13
TSPAN4-201ENST00000346501 NUTM2GQ5VZR2 741 aa22.13■■□□□ 1.13
TSPAN4-201ENST00000346501 PUS7Q96PZ0 661 aaKnown RBP22.13■■□□□ 1.13
TSPAN4-201ENST00000346501 PRDM11Q9NQV5 511 aa22.13■■□□□ 1.13
TSPAN4-201ENST00000346501 CCDC9Q9Y3X0 531 aaKnown RBP22.13■■□□□ 1.13
TSPAN4-201ENST00000346501 USP6P35125 1406 aa22.12■■□□□ 1.13
TSPAN4-201ENST00000346501 USP47Q96K76 1375 aa22.12■■□□□ 1.13
TSPAN4-201ENST00000346501 BCL9LQ86UU0 1499 aa22.11■■□□□ 1.13
TSPAN4-201ENST00000346501 HDGFL2Q7Z4V5 671 aaPredicted RBP22.11■■□□□ 1.13
TSPAN4-201ENST00000346501 ATRNO75882 1429 aa22.11■■□□□ 1.13
TSPAN4-201ENST00000346501 SLIT2O94813 1529 aa22.11■■□□□ 1.13
TSPAN4-201ENST00000346501 FAM83GA6ND36 823 aa22.1■■□□□ 1.13
TSPAN4-201ENST00000346501 NLRP6P59044 892 aa22.1■■□□□ 1.13
TSPAN4-201ENST00000346501 TMF1P82094 1093 aa22.1■■□□□ 1.13
TSPAN4-201ENST00000346501 GJD4Q96KN9 370 aaPredicted RBP22.1■■□□□ 1.13
TSPAN4-201ENST00000346501 ABCA3Q99758 1704 aa22.09■■□□□ 1.13
TSPAN4-201ENST00000346501 CDCA8Q53HL2 280 aa22.09■■□□□ 1.13
TSPAN4-201ENST00000346501 TERF2IPQ9NYB0 399 aa22.09■■□□□ 1.13
TSPAN4-201ENST00000346501 KTN1Q86UP2 1357 aaKnown RBP22.09■■□□□ 1.13
TSPAN4-201ENST00000346501 TTC21AQ8NDW8 1320 aa22.07■■□□□ 1.12
TSPAN4-201ENST00000346501 ZC3H6P61129 1189 aaKnown RBP22.07■■□□□ 1.12
TSPAN4-201ENST00000346501 BTG4Q9NY30 223 aa22.07■■□□□ 1.12
TSPAN4-201ENST00000346501 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.06■■□□□ 1.12
TSPAN4-201ENST00000346501 VPS72Q15906 364 aa22.06■■□□□ 1.12
TSPAN4-201ENST00000346501 TESK2Q96S53 571 aa22.06■■□□□ 1.12
TSPAN4-201ENST00000346501 NWD2Q9ULI1 1742 aa22.06■■□□□ 1.12
TSPAN4-201ENST00000346501 NINLQ9Y2I6 1382 aa22.05■■□□□ 1.12
TSPAN4-201ENST00000346501 TTC21BQ7Z4L5 1316 aa22.05■■□□□ 1.12
TSPAN4-201ENST00000346501 COL14A1Q05707 1796 aaKnown RBP22.04■■□□□ 1.12
TSPAN4-201ENST00000346501 KIAA0232Q92628 1395 aa22.04■■□□□ 1.12
TSPAN4-201ENST00000346501 GCP02774 474 aa22.04■■□□□ 1.12
TSPAN4-201ENST00000346501 USP19O94966 1318 aa22.04■■□□□ 1.12
TSPAN4-201ENST00000346501 PLCH1Q4KWH8 1693 aa22.03■■□□□ 1.12
TSPAN4-201ENST00000346501 RGS12O14924 1447 aa22.03■■□□□ 1.12
TSPAN4-201ENST00000346501 CPSF1Q10570 1443 aaKnown RBP22.03■■□□□ 1.12
TSPAN4-201ENST00000346501 EVA1CP58658 441 aa22.02■■□□□ 1.12
TSPAN4-201ENST00000346501 KCNH5Q8NCM2 988 aa22.02■■□□□ 1.12
TSPAN4-201ENST00000346501 SLC12A5Q9H2X9 1139 aa22.02■■□□□ 1.12
TSPAN4-201ENST00000346501 A0A0G2JS52 829 aa22.01■■□□□ 1.11
TSPAN4-201ENST00000346501 MYT1Q01538 1121 aa22.01■■□□□ 1.11
TSPAN4-201ENST00000346501 CHRNA2Q15822 529 aa22.01■■□□□ 1.11
TSPAN4-201ENST00000346501 PHRF1Q9P1Y6 1649 aaKnown RBP22.01■■□□□ 1.11
TSPAN4-201ENST00000346501 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22■■□□□ 1.11
TSPAN4-201ENST00000346501 CRYBG1Q9Y4K1 1723 aa22■■□□□ 1.11
TSPAN4-201ENST00000346501 AKAP12Q02952 1782 aa21.99■■□□□ 1.11
TSPAN4-201ENST00000346501 SSH2Q76I76 1423 aa21.99■■□□□ 1.11
TSPAN4-201ENST00000346501 ZBTB7CA1YPR0 619 aa21.99■■□□□ 1.11
TSPAN4-201ENST00000346501 CPDO75976 1380 aa21.99■■□□□ 1.11
TSPAN4-201ENST00000346501 EIF4G2P78344 907 aaKnown RBP eCLIP21.98■■□□□ 1.11
TSPAN4-201ENST00000346501 STRN4Q9NRL3 753 aa21.98■■□□□ 1.11
TSPAN4-201ENST00000346501 EDC4Q6P2E9 1401 aaKnown RBP21.96■■□□□ 1.11
TSPAN4-201ENST00000346501 NRKQ7Z2Y5 1582 aa21.95■■□□□ 1.11
TSPAN4-201ENST00000346501 SEPT12Q8IYM1 358 aa21.94■■□□□ 1.1
TSPAN4-201ENST00000346501 A0A1W2PP64 1363 aa21.93■■□□□ 1.1
TSPAN4-201ENST00000346501 SOX12O15370 315 aa21.93■■□□□ 1.1
TSPAN4-201ENST00000346501 MON2Q7Z3U7 1717 aa21.93■■□□□ 1.1
TSPAN4-201ENST00000346501 UPF1Q92900 1129 aaKnown RBP eCLIP21.93■■□□□ 1.14e-9■■■■□ 26.7
TSPAN4-201ENST00000346501 PIK3C2AO00443 1686 aa21.92■■□□□ 1.1
TSPAN4-201ENST00000346501 GLI3P10071 1580 aa21.92■■□□□ 1.1
TSPAN4-201ENST00000346501 SPATA31A5Q5VU36 1347 aa21.92■■□□□ 1.1
TSPAN4-201ENST00000346501 SPATA31A7Q8IWB4 1347 aa21.92■■□□□ 1.1
TSPAN4-201ENST00000346501 SLIT3O75094 1523 aa21.91■■□□□ 1.1
TSPAN4-201ENST00000346501 FAM98CQ17RN3 349 aaKnown RBP21.91■■□□□ 1.1
TSPAN4-201ENST00000346501 NRAPQ86VF7 1730 aa21.91■■□□□ 1.1
TSPAN4-201ENST00000346501 CD163L1Q9NR16 1453 aa21.9■■□□□ 1.1
TSPAN4-201ENST00000346501 ANKRD36BQ8N2N9 1353 aa21.9■■□□□ 1.1
TSPAN4-201ENST00000346501 ONECUT3O60422 494 aaPredicted RBP21.9■■□□□ 1.1
TSPAN4-201ENST00000346501 NME9Q86XW9 330 aa21.9■■□□□ 1.1
TSPAN4-201ENST00000346501 AATKQ6ZMQ8 1374 aa21.89■■□□□ 1.1
TSPAN4-201ENST00000346501 USP31Q70CQ4 1352 aa21.89■■□□□ 1.1
TSPAN4-201ENST00000346501 COG3Q96JB2 828 aa21.88■■□□□ 1.09
TSPAN4-201ENST00000346501 POLR3GLQ9BT43 218 aa21.88■■□□□ 1.09
TSPAN4-201ENST00000346501 USP35Q9P2H5 1018 aa21.88■■□□□ 1.09
TSPAN4-201ENST00000346501 SPATA31A1Q5TZJ5 1347 aa21.87■■□□□ 1.09
TSPAN4-201ENST00000346501 KRT27Q7Z3Y8 459 aa21.87■■□□□ 1.09
TSPAN4-201ENST00000346501 ARHGEF25Q86VW2 580 aa21.87■■□□□ 1.09
TSPAN4-201ENST00000346501 HSPA5P11021 654 aaKnown RBP21.86■■□□□ 1.09
TSPAN4-201ENST00000346501 CCDC125Q86Z20 511 aa21.86■■□□□ 1.09
TSPAN4-201ENST00000346501 CAMTA1Q9Y6Y1 1673 aa21.85■■□□□ 1.09
TSPAN4-201ENST00000346501 CSB-PGBD3P0DP91 1061 aa21.85■■□□□ 1.09
TSPAN4-201ENST00000346501 LARP1Q6PKG0 1096 aaKnown RBP21.85■■□□□ 1.09
TSPAN4-201ENST00000346501 THRAP3Q9Y2W1 955 aaKnown RBP21.85■■□□□ 1.09
TSPAN4-201ENST00000346501 TOM1L2Q6ZVM7 507 aa21.84■■□□□ 1.09
TSPAN4-201ENST00000346501 TCP11L2Q8N4U5 519 aa21.84■■□□□ 1.09
TSPAN4-201ENST00000346501 ZRANB1Q9UGI0 708 aa21.84■■□□□ 1.09
TSPAN4-201ENST00000346501 SF3B2Q13435 895 aaKnown RBP21.83■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms