RNA–Protein interactions for RNA: ENST00000344722.5

SMC4-201, Transcript of structural maintenance of chromosomes 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC4, Length 5,356 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-201ENST00000344722 SYNJ1O43426 1573 aa21.58■■□□□ 1.04
SMC4-201ENST00000344722 KRT85P78386 507 aa21.57■■□□□ 1.04
SMC4-201ENST00000344722 MINK1Q8N4C8 1332 aaPredicted RBP21.57■■□□□ 1.04
SMC4-201ENST00000344722 ZNF396Q96N95 335 aaPredicted RBP21.57■■□□□ 1.04
SMC4-201ENST00000344722 ERBINQ96RT1 1412 aa21.56■■□□□ 1.04
SMC4-201ENST00000344722 UBTFL1P0CB47 393 aaPredicted RBP21.56■■□□□ 1.04
SMC4-201ENST00000344722 FOSBP53539 338 aa21.56■■□□□ 1.04
SMC4-201ENST00000344722 TRDNQ13061 729 aa21.56■■□□□ 1.04
SMC4-201ENST00000344722 JPH4Q96JJ6 628 aa21.56■■□□□ 1.04
SMC4-201ENST00000344722 CCDC9Q9Y3X0 531 aaKnown RBP21.56■■□□□ 1.04
SMC4-201ENST00000344722 EFCAB5A4FU69 1503 aa21.56■■□□□ 1.04
SMC4-201ENST00000344722 EIF3JO75822 258 aaKnown RBP21.56■■□□□ 1.04
SMC4-201ENST00000344722 TSPYL4Q9UJ04 414 aa21.56■■□□□ 1.04
SMC4-201ENST00000344722 CSB-PGBD3P0DP91 1061 aa21.55■■□□□ 1.04
SMC4-201ENST00000344722 TSR2Q969E8 191 aaKnown RBP21.55■■□□□ 1.04
SMC4-201ENST00000344722 LTV1Q96GA3 475 aaPredicted RBP21.55■■□□□ 1.04
SMC4-201ENST00000344722 NCOA1Q15788 1441 aa21.55■■□□□ 1.04
SMC4-201ENST00000344722 ERLIN1O75477 346 aa21.55■■□□□ 1.04
SMC4-201ENST00000344722 EIF2S2P20042 333 aaKnown RBP21.55■■□□□ 1.04
SMC4-201ENST00000344722 ERICH4A6NGS2 130 aa21.54■■□□□ 1.04
SMC4-201ENST00000344722 DCTN1Q14203 1278 aa21.54■■□□□ 1.04
SMC4-201ENST00000344722 CAGE1Q8TC20 777 aa21.54■■□□□ 1.04
SMC4-201ENST00000344722 CGNQ9P2M7 1197 aaKnown RBP21.54■■□□□ 1.04
SMC4-201ENST00000344722 KIF2AO00139 706 aaPredicted RBP21.54■■□□□ 1.04
SMC4-201ENST00000344722 HIP1O00291 1037 aa21.54■■□□□ 1.04
SMC4-201ENST00000344722 HMOX1P09601 288 aa21.54■■□□□ 1.04
SMC4-201ENST00000344722 SAFBQ15424 915 aaKnown RBP eCLIP21.54■■□□□ 1.042e-9■■□□□ 11.5
SMC4-201ENST00000344722 NBPF1Q3BBV0 1214 aa21.54■■□□□ 1.04
SMC4-201ENST00000344722 TEFQ10587 303 aa21.53■■□□□ 1.04
SMC4-201ENST00000344722 CALCOCO1Q9P1Z2 691 aa21.53■■□□□ 1.04
SMC4-201ENST00000344722 NKTRP30414 1462 aaKnown RBP21.53■■□□□ 1.04
SMC4-201ENST00000344722 TWISTNBQ3B726 338 aaPredicted RBP21.53■■□□□ 1.04
SMC4-201ENST00000344722 XRCC6P12956 609 aaKnown RBP eCLIP21.53■■□□□ 1.04
SMC4-201ENST00000344722 PDIA4P13667 645 aaKnown RBP21.53■■□□□ 1.04
SMC4-201ENST00000344722 FANCD2Q9BXW9 1451 aa21.53■■□□□ 1.04
SMC4-201ENST00000344722 NUP62CLQ9H1M0 184 aa21.52■■□□□ 1.04
SMC4-201ENST00000344722 DDX58O95786 925 aaKnown RBP21.52■■□□□ 1.04
SMC4-201ENST00000344722 NECTIN2Q92692 538 aa21.52■■□□□ 1.04
SMC4-201ENST00000344722 GGNBP2Q9H3C7 697 aa21.52■■□□□ 1.04
SMC4-201ENST00000344722 MARCH6O60337 910 aa21.52■■□□□ 1.04
SMC4-201ENST00000344722 SMARCE1Q969G3 411 aa21.52■■□□□ 1.04
SMC4-201ENST00000344722 CYP46A1Q9Y6A2 500 aa21.52■■□□□ 1.04
SMC4-201ENST00000344722 USP8P40818 1118 aa21.51■■□□□ 1.03
SMC4-201ENST00000344722 PDE4CQ08493 712 aa21.51■■□□□ 1.03
SMC4-201ENST00000344722 ANKRD1Q15327 319 aa21.51■■□□□ 1.03
SMC4-201ENST00000344722 PRIMPOLQ96LW4 560 aa21.51■■□□□ 1.03
SMC4-201ENST00000344722 LRPPRCP42704 1394 aaKnown RBP21.51■■□□□ 1.03
SMC4-201ENST00000344722 NAIPQ13075 1403 aa21.51■■□□□ 1.03
SMC4-201ENST00000344722 TBC1D32Q96NH3 1257 aa21.5■■□□□ 1.03
SMC4-201ENST00000344722 WWC1Q8IX03 1113 aa21.5■■□□□ 1.03
SMC4-201ENST00000344722 C1orf141Q5JVX7 400 aa21.5■■□□□ 1.03
SMC4-201ENST00000344722 CCDC191Q8NCU4 936 aa21.5■■□□□ 1.03
SMC4-201ENST00000344722 FMNL2Q96PY5 1086 aa21.5■■□□□ 1.03
SMC4-201ENST00000344722 SSFA2P28290 1259 aa21.49■■□□□ 1.03
SMC4-201ENST00000344722 CCDC183Q5T5S1 534 aa21.49■■□□□ 1.03
SMC4-201ENST00000344722 CLASRPQ8N2M8 674 aaKnown RBP21.49■■□□□ 1.03
SMC4-201ENST00000344722 GNAI2P04899 355 aa21.49■■□□□ 1.03
SMC4-201ENST00000344722 AXDND1Q5T1B0 1012 aaPredicted RBP21.49■■□□□ 1.03
SMC4-201ENST00000344722 ZNF428Q96B54 188 aa21.49■■□□□ 1.03
SMC4-201ENST00000344722 DEF6Q9H4E7 631 aa21.49■■□□□ 1.03
SMC4-201ENST00000344722 ZHX1Q9UKY1 873 aaPredicted RBP21.49■■□□□ 1.03
SMC4-201ENST00000344722 ZSCAN31Q96LW9 406 aaPredicted RBP21.48■■□□□ 1.03
SMC4-201ENST00000344722 KLHL40Q2TBA0 621 aa21.48■■□□□ 1.03
SMC4-201ENST00000344722 NFXL1Q6ZNB6 911 aa21.48■■□□□ 1.03
SMC4-201ENST00000344722 FILIP1LQ4L180 1135 aa21.48■■□□□ 1.03
SMC4-201ENST00000344722 PPP4R3BQ5MIZ7 849 aa21.48■■□□□ 1.03
SMC4-201ENST00000344722 CBFA2T2O43439 604 aa21.48■■□□□ 1.03
SMC4-201ENST00000344722 MAP3K11Q16584 847 aa21.47■■□□□ 1.03
SMC4-201ENST00000344722 SURF6O75683 361 aaKnown RBP21.47■■□□□ 1.03
SMC4-201ENST00000344722 TMCO3Q6UWJ1 677 aa21.47■■□□□ 1.03
SMC4-201ENST00000344722 FSD1Q9BTV5 496 aa21.47■■□□□ 1.03
SMC4-201ENST00000344722 SRCIN1Q9C0H9 1055 aa21.47■■□□□ 1.03
SMC4-201ENST00000344722 SERPINC1P01008 464 aa21.47■■□□□ 1.03
SMC4-201ENST00000344722 LARP1BQ659C4 914 aaKnown RBP21.47■■□□□ 1.03
SMC4-201ENST00000344722 UBXN4Q92575 508 aa21.47■■□□□ 1.03
SMC4-201ENST00000344722 LRRCC1Q9C099 1032 aa21.47■■□□□ 1.03
SMC4-201ENST00000344722 RALYLQ86SE5 291 aaKnown RBP21.47■■□□□ 1.03
SMC4-201ENST00000344722 NAP1L1P55209 391 aaKnown RBP21.46■■□□□ 1.03
SMC4-201ENST00000344722 KIAA0754O94854 1291 aa21.46■■□□□ 1.03
SMC4-201ENST00000344722 GAPVD1Q14C86 1478 aa21.46■■□□□ 1.03
SMC4-201ENST00000344722 STK38Q15208 465 aa21.46■■□□□ 1.03
SMC4-201ENST00000344722 PTPN14Q15678 1187 aa21.46■■□□□ 1.03
SMC4-201ENST00000344722 CEP57L1Q8IYX8 460 aa21.46■■□□□ 1.03
SMC4-201ENST00000344722 SPATA32Q96LK8 384 aa21.46■■□□□ 1.03
SMC4-201ENST00000344722 PRKAR2BP31323 418 aa21.45■■□□□ 1.02
SMC4-201ENST00000344722 PLEKHH1Q9ULM0 1364 aa21.45■■□□□ 1.02
SMC4-201ENST00000344722 TTLL5Q6EMB2 1281 aa21.44■■□□□ 1.02
SMC4-201ENST00000344722 RARSP54136 660 aaKnown RBP21.44■■□□□ 1.02
SMC4-201ENST00000344722 RRP12Q5JTH9 1297 aaKnown RBP21.44■■□□□ 1.02
SMC4-201ENST00000344722 DHX29Q7Z478 1369 aaKnown RBP21.43■■□□□ 1.02
SMC4-201ENST00000344722 CCT4P50991 539 aaKnown RBP21.43■■□□□ 1.02
SMC4-201ENST00000344722 CCDC30Q5VVM6 783 aa21.43■■□□□ 1.02
SMC4-201ENST00000344722 POLA1P09884 1462 aaPredicted RBP21.43■■□□□ 1.02
SMC4-201ENST00000344722 PPP6R1Q9UPN7 881 aa21.43■■□□□ 1.02
SMC4-201ENST00000344722 UVSSAQ2YD98 709 aa21.42■■□□□ 1.02
SMC4-201ENST00000344722 TMEM57Q8N5G2 664 aa21.42■■□□□ 1.02
SMC4-201ENST00000344722 MAP3K1Q13233 1512 aa21.42■■□□□ 1.02
SMC4-201ENST00000344722 ERICH2A1L162 156 aa21.42■■□□□ 1.02
SMC4-201ENST00000344722 RPAP2Q8IXW5 612 aaPredicted RBP21.42■■□□□ 1.02
SMC4-201ENST00000344722 KIF18AQ8NI77 898 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms