RNA–Protein interactions for RNA: ENST00000343257.6

CLCN1-201, Transcript of chloride voltage-gated channel 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLCN1, Length 3,172 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN1-201ENST00000343257 ERVK-7P63135 1459 aa18.41■□□□□ 0.54
CLCN1-201ENST00000343257 SAFB2Q14151 953 aaKnown RBP eCLIP18.41■□□□□ 0.54
CLCN1-201ENST00000343257 TMEM132EQ6IEE7 984 aa18.41■□□□□ 0.54
CLCN1-201ENST00000343257 PTMSP20962 102 aa18.4■□□□□ 0.54
CLCN1-201ENST00000343257 FOXD4L6Q3SYB3 417 aaPredicted RBP18.4■□□□□ 0.54
CLCN1-201ENST00000343257 FOXD4L3Q6VB84 417 aaPredicted RBP18.4■□□□□ 0.54
CLCN1-201ENST00000343257 ARHGEF5Q12774 1597 aa18.4■□□□□ 0.54
CLCN1-201ENST00000343257 MYOM1P52179 1685 aa18.4■□□□□ 0.54
CLCN1-201ENST00000343257 SYCE3A1L190 88 aa18.4■□□□□ 0.54
CLCN1-201ENST00000343257 APBB1O00213 710 aa18.39■□□□□ 0.53
CLCN1-201ENST00000343257 DNTTIP2Q5QJE6 756 aaKnown RBP18.39■□□□□ 0.53
CLCN1-201ENST00000343257 NOL7Q9UMY1 257 aaKnown RBP18.39■□□□□ 0.53
CLCN1-201ENST00000343257 FAM177BA6PVY3 158 aa18.39■□□□□ 0.53
CLCN1-201ENST00000343257 PTMAP06454 111 aaKnown RBP18.39■□□□□ 0.53
CLCN1-201ENST00000343257 RNF17Q9BXT8 1623 aaKnown RBP18.39■□□□□ 0.53
CLCN1-201ENST00000343257 BMP2KLQ5H9B9 411 aa18.38■□□□□ 0.53
CLCN1-201ENST00000343257 ZGPATQ8N5A5 531 aaKnown RBP18.38■□□□□ 0.53
CLCN1-201ENST00000343257 MADDQ8WXG6 1647 aa18.38■□□□□ 0.53
CLCN1-201ENST00000343257 LMBRD1Q9NUN5 540 aa18.38■□□□□ 0.53
CLCN1-201ENST00000343257 NSFL1CQ9UNZ2 370 aaKnown RBP18.38■□□□□ 0.53
CLCN1-201ENST00000343257 ABCA8O94911 1581 aa18.37■□□□□ 0.53
CLCN1-201ENST00000343257 TMPOP42166 694 aaKnown RBP18.37■□□□□ 0.53
CLCN1-201ENST00000343257 NUTM2DQ5VT03 806 aaPredicted RBP18.37■□□□□ 0.53
CLCN1-201ENST00000343257 IQGAP1P46940 1657 aa18.37■□□□□ 0.53
CLCN1-201ENST00000343257 CCDC27Q2M243 656 aa18.36■□□□□ 0.53
CLCN1-201ENST00000343257 AFAP1Q8N556 730 aa18.36■□□□□ 0.53
CLCN1-201ENST00000343257 GPT2Q8TD30 523 aa18.36■□□□□ 0.53
CLCN1-201ENST00000343257 TRIM35Q9UPQ4 493 aa18.36■□□□□ 0.53
CLCN1-201ENST00000343257 KIF16BQ96L93 1317 aa18.36■□□□□ 0.53
CLCN1-201ENST00000343257 KDM5AP29375 1690 aaKnown RBP18.35■□□□□ 0.53
CLCN1-201ENST00000343257 MRC2Q9UBG0 1479 aa18.35■□□□□ 0.53
CLCN1-201ENST00000343257 ZNF445P59923 1031 aa18.35■□□□□ 0.53
CLCN1-201ENST00000343257 ZKSCAN5Q9Y2L8 839 aa18.35■□□□□ 0.53
CLCN1-201ENST00000343257 ZNF830Q96NB3 372 aaPredicted RBP18.34■□□□□ 0.53
CLCN1-201ENST00000343257 IQSEC2Q5JU85 1478 aa18.34■□□□□ 0.53
CLCN1-201ENST00000343257 UNC13BO14795 1591 aa18.34■□□□□ 0.53
CLCN1-201ENST00000343257 IPO8O15397 1037 aaKnown RBP18.34■□□□□ 0.53
CLCN1-201ENST00000343257 GGNBP2Q9H3C7 697 aa18.34■□□□□ 0.53
CLCN1-201ENST00000343257 SCAPERQ9BY12 1400 aa18.34■□□□□ 0.53
CLCN1-201ENST00000343257 NOL8Q76FK4 1167 aaKnown RBP18.34■□□□□ 0.53
CLCN1-201ENST00000343257 C16orf71Q8IYS4 520 aaPredicted RBP18.34■□□□□ 0.53
CLCN1-201ENST00000343257 IFT140Q96RY7 1462 aa18.34■□□□□ 0.53
CLCN1-201ENST00000343257 THUMPD2Q9BTF0 503 aaKnown RBP18.33■□□□□ 0.53
CLCN1-201ENST00000343257 TMEM63CQ9P1W3 806 aa18.33■□□□□ 0.53
CLCN1-201ENST00000343257 ZNF500O60304 480 aaPredicted RBP18.33■□□□□ 0.52
CLCN1-201ENST00000343257 MAP7D2Q96T17 732 aa18.33■□□□□ 0.52
CLCN1-201ENST00000343257 CDC42BPBQ9Y5S2 1711 aa18.33■□□□□ 0.52
CLCN1-201ENST00000343257 IQGAP3Q86VI3 1631 aa18.32■□□□□ 0.52
CLCN1-201ENST00000343257 ATAD2Q6PL18 1390 aa18.31■□□□□ 0.52
CLCN1-201ENST00000343257 CDC45O75419 566 aa18.31■□□□□ 0.52
CLCN1-201ENST00000343257 C17orf53Q8N3J3 647 aaPredicted RBP18.31■□□□□ 0.52
CLCN1-201ENST00000343257 KIF3BO15066 747 aa18.31■□□□□ 0.52
CLCN1-201ENST00000343257 GSPT1P15170 499 aaKnown RBP18.3■□□□□ 0.52
CLCN1-201ENST00000343257 NUCB2P80303 420 aa18.3■□□□□ 0.52
CLCN1-201ENST00000343257 CABP2Q9NPB3 220 aa18.3■□□□□ 0.52
CLCN1-201ENST00000343257 CEP152O94986 1710 aa18.3■□□□□ 0.52
CLCN1-201ENST00000343257 CBX1P83916 185 aa18.3■□□□□ 0.52
CLCN1-201ENST00000343257 ATP10AO60312 1499 aa18.3■□□□□ 0.52
CLCN1-201ENST00000343257 PDLIM2Q96JY6 352 aa18.3■□□□□ 0.52
CLCN1-201ENST00000343257 MAST1Q9Y2H9 1570 aa18.3■□□□□ 0.52
CLCN1-201ENST00000343257 SIRT2Q8IXJ6 389 aa18.29■□□□□ 0.52
CLCN1-201ENST00000343257 PTPRTO14522 1441 aa18.29■□□□□ 0.52
CLCN1-201ENST00000343257 SASS6Q6UVJ0 657 aa18.29■□□□□ 0.52
CLCN1-201ENST00000343257 DYNC1I1O14576 645 aa18.28■□□□□ 0.52
CLCN1-201ENST00000343257 TERF1P54274 439 aa18.28■□□□□ 0.52
CLCN1-201ENST00000343257 OTUD7AQ8TE49 926 aaPredicted RBP18.28■□□□□ 0.52
CLCN1-201ENST00000343257 SHPRHQ149N8 1683 aa18.28■□□□□ 0.52
CLCN1-201ENST00000343257 PPIP5K1Q6PFW1 1433 aa18.28■□□□□ 0.52
CLCN1-201ENST00000343257 FBLN1P23142 703 aa18.28■□□□□ 0.52
CLCN1-201ENST00000343257 ZNF518AQ6AHZ1 1483 aa18.28■□□□□ 0.52
CLCN1-201ENST00000343257 ZBTB7BO15156 539 aaPredicted RBP18.28■□□□□ 0.52
CLCN1-201ENST00000343257 CCDC39Q9UFE4 941 aa18.27■□□□□ 0.52
CLCN1-201ENST00000343257 ZDHHC9Q9Y397 364 aa18.27■□□□□ 0.52
CLCN1-201ENST00000343257 CD109Q6YHK3 1445 aa18.27■□□□□ 0.52
CLCN1-201ENST00000343257 SPAG9O60271 1321 aaKnown RBP18.27■□□□□ 0.52
CLCN1-201ENST00000343257 RABEP1Q15276 862 aa18.27■□□□□ 0.51
CLCN1-201ENST00000343257 CSPP1Q1MSJ5 1256 aa18.27■□□□□ 0.51
CLCN1-201ENST00000343257 KANK1Q14678 1352 aa18.26■□□□□ 0.51
CLCN1-201ENST00000343257 CT47B1P0C2W7 299 aaPredicted RBP18.26■□□□□ 0.51
CLCN1-201ENST00000343257 HS1BP3Q53T59 392 aa18.26■□□□□ 0.51
CLCN1-201ENST00000343257 TSPYL6Q8N831 410 aa18.26■□□□□ 0.51
CLCN1-201ENST00000343257 UGGT1Q9NYU2 1555 aa18.26■□□□□ 0.51
CLCN1-201ENST00000343257 LRSAM1Q6UWE0 723 aa18.26■□□□□ 0.51
CLCN1-201ENST00000343257 GDPD2Q9HCC8 539 aa18.26■□□□□ 0.51
CLCN1-201ENST00000343257 SMAP1Q8IYB5 467 aaPredicted RBP18.26■□□□□ 0.51
CLCN1-201ENST00000343257 GCC1Q96CN9 775 aa18.26■□□□□ 0.51
CLCN1-201ENST00000343257 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.26■□□□□ 0.51
CLCN1-201ENST00000343257 IBTKQ9P2D0 1353 aaPredicted RBP18.25■□□□□ 0.51
CLCN1-201ENST00000343257 SMARCA5O60264 1052 aaPredicted RBP18.25■□□□□ 0.51
CLCN1-201ENST00000343257 PLCB2Q00722 1185 aa18.25■□□□□ 0.51
CLCN1-201ENST00000343257 PLEKHF1Q96S99 279 aa18.25■□□□□ 0.51
CLCN1-201ENST00000343257 DUOX2Q9NRD8 1548 aa18.25■□□□□ 0.51
CLCN1-201ENST00000343257 TTC37Q6PGP7 1564 aa18.25■□□□□ 0.51
CLCN1-201ENST00000343257 IGSF3O75054 1194 aa18.24■□□□□ 0.51
CLCN1-201ENST00000343257 CLEC17AQ6ZS10 378 aa18.24■□□□□ 0.51
CLCN1-201ENST00000343257 SLC24A1O60721 1099 aa18.24■□□□□ 0.51
CLCN1-201ENST00000343257 TRAPPC8Q9Y2L5 1435 aa18.24■□□□□ 0.51
CLCN1-201ENST00000343257 CLTCL1P53675 1640 aa18.23■□□□□ 0.51
CLCN1-201ENST00000343257 EFCAB2Q5VUJ9 269 aa18.23■□□□□ 0.51
CLCN1-201ENST00000343257 PREX2Q70Z35 1606 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms