RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 ABTB2Q8N961 1025 aa16.99■□□□□ 0.31
COL18A1-201ENST00000342220 DDX17Q92841 729 aaKnown RBP16.99■□□□□ 0.31
COL18A1-201ENST00000342220 ELL2O00472 640 aaPredicted RBP16.99■□□□□ 0.31
COL18A1-201ENST00000342220 DMRT2Q9Y5R5 561 aa16.99■□□□□ 0.31
COL18A1-201ENST00000342220 NOP58Q9Y2X3 529 aaKnown RBP16.98■□□□□ 0.31
COL18A1-201ENST00000342220 ABCC11Q96J66 1382 aa16.98■□□□□ 0.31
COL18A1-201ENST00000342220 TBX22Q9Y458 520 aa16.98■□□□□ 0.31
COL18A1-201ENST00000342220 TCERG1O14776 1098 aaKnown RBP16.98■□□□□ 0.31
COL18A1-201ENST00000342220 THUMPD2Q9BTF0 503 aaKnown RBP16.98■□□□□ 0.31
COL18A1-201ENST00000342220 AMPHP49418 695 aa16.97■□□□□ 0.31
COL18A1-201ENST00000342220 SPINK5Q9NQ38 1064 aaPredicted RBP16.97■□□□□ 0.31
COL18A1-201ENST00000342220 PTPRMP28827 1452 aa16.97■□□□□ 0.31
COL18A1-201ENST00000342220 ORAI2Q96SN7 254 aa16.96■□□□□ 0.31
COL18A1-201ENST00000342220 RRP1P56182 461 aaKnown RBP16.95■□□□□ 0.3
COL18A1-201ENST00000342220 TULP4Q9NRJ4 1543 aa16.95■□□□□ 0.3
COL18A1-201ENST00000342220 ZFYVE9O95405 1425 aa16.95■□□□□ 0.3
COL18A1-201ENST00000342220 SBNO2Q9Y2G9 1366 aa16.95■□□□□ 0.3
COL18A1-201ENST00000342220 PRKAR2BP31323 418 aa16.95■□□□□ 0.3
COL18A1-201ENST00000342220 TSR2Q969E8 191 aaKnown RBP16.95■□□□□ 0.3
COL18A1-201ENST00000342220 EXOC6Q8TAG9 804 aa16.94■□□□□ 0.3
COL18A1-201ENST00000342220 CLUAP1Q96AJ1 413 aa16.94■□□□□ 0.3
COL18A1-201ENST00000342220 MYOM1P52179 1685 aa16.94■□□□□ 0.3
COL18A1-201ENST00000342220 POLKQ9UBT6 870 aa16.93■□□□□ 0.3
COL18A1-201ENST00000342220 SETD1AO15047 1707 aaKnown RBP16.93■□□□□ 0.3
COL18A1-201ENST00000342220 RIPK4P57078 832 aa16.92■□□□□ 0.3
COL18A1-201ENST00000342220 HSP90AB2PQ58FF8 381 aa16.92■□□□□ 0.3
COL18A1-201ENST00000342220 QRICH2Q9H0J4 1663 aa16.92■□□□□ 0.3
COL18A1-201ENST00000342220 RUNDC1Q96C34 613 aa16.92■□□□□ 0.3
COL18A1-201ENST00000342220 PLEKHG1Q9ULL1 1385 aa16.92■□□□□ 0.3
COL18A1-201ENST00000342220 ADAMTS13Q76LX8 1427 aa16.92■□□□□ 0.3
COL18A1-201ENST00000342220 DCTN1Q14203 1278 aa16.91■□□□□ 0.3
COL18A1-201ENST00000342220 PTPRUQ92729 1446 aa16.9■□□□□ 0.3
COL18A1-201ENST00000342220 BCAR3O75815 825 aa16.9■□□□□ 0.3
COL18A1-201ENST00000342220 TTC21BQ7Z4L5 1316 aa16.9■□□□□ 0.3
COL18A1-201ENST00000342220 SULT6B1Q6IMI4 303 aa16.9■□□□□ 0.3
COL18A1-201ENST00000342220 AEBP1Q8IUX7 1158 aa16.89■□□□□ 0.3
COL18A1-201ENST00000342220 USHBP1Q8N6Y0 703 aa16.89■□□□□ 0.3
COL18A1-201ENST00000342220 ATF3P18847 181 aa16.89■□□□□ 0.29
COL18A1-201ENST00000342220 PHF8Q9UPP1 1060 aa16.89■□□□□ 0.29
COL18A1-201ENST00000342220 NLRP1Q9C000 1473 aa16.89■□□□□ 0.29
COL18A1-201ENST00000342220 HAP1P54257 671 aaPredicted RBP16.89■□□□□ 0.29
COL18A1-201ENST00000342220 ZNF692Q9BU19 519 aaPredicted RBP16.89■□□□□ 0.29
COL18A1-201ENST00000342220 C20orf194Q5TEA3 1177 aa16.88■□□□□ 0.29
COL18A1-201ENST00000342220 RIMS1Q86UR5 1692 aaKnown RBP16.88■□□□□ 0.29
COL18A1-201ENST00000342220 ARHGEF28Q8N1W1 1705 aaKnown RBP16.88■□□□□ 0.29
COL18A1-201ENST00000342220 ANP32AP39687 249 aaKnown RBP16.88■□□□□ 0.29
COL18A1-201ENST00000342220 WWC1Q8IX03 1113 aa16.88■□□□□ 0.29
COL18A1-201ENST00000342220 ZC3H6P61129 1189 aaKnown RBP16.87■□□□□ 0.29
COL18A1-201ENST00000342220 PDE3BQ13370 1112 aa16.87■□□□□ 0.29
COL18A1-201ENST00000342220 FAM83GA6ND36 823 aa16.86■□□□□ 0.29
COL18A1-201ENST00000342220 PHACTR3Q96KR7 559 aa16.86■□□□□ 0.29
COL18A1-201ENST00000342220 SKAP1Q86WV1 359 aa16.86■□□□□ 0.29
COL18A1-201ENST00000342220 CABLES1Q8TDN4 633 aa16.85■□□□□ 0.29
COL18A1-201ENST00000342220 IPO9Q96P70 1041 aaKnown RBP16.85■□□□□ 0.29
COL18A1-201ENST00000342220 CRBNQ96SW2 442 aa16.84■□□□□ 0.29
COL18A1-201ENST00000342220 FER1L4A9Z1Z3 1794 aa16.84■□□□□ 0.29
COL18A1-201ENST00000342220 DUSP27Q5VZP5 1158 aa16.83■□□□□ 0.28
COL18A1-201ENST00000342220 MIS18AQ9NYP9 233 aa16.82■□□□□ 0.28
COL18A1-201ENST00000342220 TMPOP42166 694 aaKnown RBP16.82■□□□□ 0.28
COL18A1-201ENST00000342220 UBR1Q8IWV7 1749 aa16.82■□□□□ 0.28
COL18A1-201ENST00000342220 NRXN3Q9Y4C0 1643 aa16.81■□□□□ 0.28
COL18A1-201ENST00000342220 PUS7Q96PZ0 661 aaKnown RBP16.81■□□□□ 0.28
COL18A1-201ENST00000342220 BLMP54132 1417 aaPredicted RBP16.81■□□□□ 0.28
COL18A1-201ENST00000342220 C3P01024 1663 aa16.81■□□□□ 0.28
COL18A1-201ENST00000342220 SLFN5Q08AF3 891 aa16.8■□□□□ 0.28
COL18A1-201ENST00000342220 KDM4FA0A1W2PPD8 638 aa16.8■□□□□ 0.28
COL18A1-201ENST00000342220 E9PSI1 815 aa16.8■□□□□ 0.28
COL18A1-201ENST00000342220 NPM2Q86SE8 214 aaKnown RBP16.8■□□□□ 0.28
COL18A1-201ENST00000342220 NECTIN2Q92692 538 aa16.8■□□□□ 0.28
COL18A1-201ENST00000342220 PANK1Q8TE04 598 aa16.8■□□□□ 0.28
COL18A1-201ENST00000342220 ZBTB47Q9UFB7 747 aaPredicted RBP16.8■□□□□ 0.28
COL18A1-201ENST00000342220 KNDC1Q76NI1 1749 aa16.79■□□□□ 0.28
COL18A1-201ENST00000342220 EXOSC9Q06265 439 aaKnown RBP16.79■□□□□ 0.28
COL18A1-201ENST00000342220 MCM10Q7L590 875 aa16.79■□□□□ 0.28
COL18A1-201ENST00000342220 COG6Q9Y2V7 657 aa16.79■□□□□ 0.28
COL18A1-201ENST00000342220 NPC1L1Q9UHC9 1359 aa16.79■□□□□ 0.28
COL18A1-201ENST00000342220 A0A0G2JS52 829 aa16.78■□□□□ 0.28
COL18A1-201ENST00000342220 CSB-PGBD3P0DP91 1061 aa16.78■□□□□ 0.28
COL18A1-201ENST00000342220 MAP3K19Q56UN5 1328 aa16.78■□□□□ 0.28
COL18A1-201ENST00000342220 POLR3AO14802 1390 aaPredicted RBP16.78■□□□□ 0.28
COL18A1-201ENST00000342220 EIF4A2Q14240 407 aaKnown RBP16.78■□□□□ 0.28
COL18A1-201ENST00000342220 TNNQ9UQP3 1299 aa16.78■□□□□ 0.28
COL18A1-201ENST00000342220 NINLQ9Y2I6 1382 aa16.77■□□□□ 0.28
COL18A1-201ENST00000342220 PODXL2Q9NZ53 605 aa16.77■□□□□ 0.28
COL18A1-201ENST00000342220 NPHP4O75161 1426 aaPredicted RBP16.77■□□□□ 0.27
COL18A1-201ENST00000342220 CHRNA2Q15822 529 aa16.77■□□□□ 0.27
COL18A1-201ENST00000342220 SMC4Q9NTJ3 1288 aa16.77■□□□□ 0.27
COL18A1-201ENST00000342220 USP32Q8NFA0 1604 aa16.77■□□□□ 0.27
COL18A1-201ENST00000342220 PDE4AP27815 886 aa16.76■□□□□ 0.27
COL18A1-201ENST00000342220 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.76■□□□□ 0.27
COL18A1-201ENST00000342220 ZNF335Q9H4Z2 1342 aaPredicted RBP16.76■□□□□ 0.27
COL18A1-201ENST00000342220 USP35Q9P2H5 1018 aa16.76■□□□□ 0.27
COL18A1-201ENST00000342220 KRT28Q7Z3Y7 464 aa16.76■□□□□ 0.27
COL18A1-201ENST00000342220 PLEKHG3A1L390 1219 aa16.75■□□□□ 0.27
COL18A1-201ENST00000342220 LRRC59Q96AG4 307 aaKnown RBP16.75■□□□□ 0.27
COL18A1-201ENST00000342220 NSD2O96028 1365 aa16.74■□□□□ 0.27
COL18A1-201ENST00000342220 INSRP06213 1382 aa16.74■□□□□ 0.27
COL18A1-201ENST00000342220 FTSJ3Q8IY81 847 aaKnown RBP16.74■□□□□ 0.27
COL18A1-201ENST00000342220 MYH16Q9H6N6 1097 aa16.74■□□□□ 0.27
COL18A1-201ENST00000342220 CD163L1Q9NR16 1453 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms