RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 AMOTQ4VCS5 1084 aa12.68□□□□□ -0.38
USP54-201ENST00000339859 PPIP5K1Q6PFW1 1433 aa12.68□□□□□ -0.38
USP54-201ENST00000339859 ERICH6BQ5W0A0 696 aa12.67□□□□□ -0.38
USP54-201ENST00000339859 NME9Q86XW9 330 aa12.67□□□□□ -0.38
USP54-201ENST00000339859 KIF16BQ96L93 1317 aa12.67□□□□□ -0.38
USP54-201ENST00000339859 LRRC59Q96AG4 307 aaKnown RBP12.67□□□□□ -0.38
USP54-201ENST00000339859 ZBED9Q6R2W3 1325 aa12.66□□□□□ -0.38
USP54-201ENST00000339859 RALGAPBQ86X10 1494 aa12.66□□□□□ -0.38
USP54-201ENST00000339859 LRRFIP1Q32MZ4 808 aaKnown RBP12.66□□□□□ -0.38
USP54-201ENST00000339859 TMEM2Q9UHN6 1383 aa12.66□□□□□ -0.38
USP54-201ENST00000339859 AIMP1Q12904 312 aaKnown RBP12.66□□□□□ -0.38
USP54-201ENST00000339859 TTC21BQ7Z4L5 1316 aa12.66□□□□□ -0.38
USP54-201ENST00000339859 VPS37DQ86XT2 251 aa12.66□□□□□ -0.38
USP54-201ENST00000339859 TMOD3Q9NYL9 352 aa12.65□□□□□ -0.38
USP54-201ENST00000339859 EXOC5O00471 708 aa12.65□□□□□ -0.38
USP54-201ENST00000339859 PRAG1Q86YV5 1406 aa12.65□□□□□ -0.38
USP54-201ENST00000339859 GCC2Q8IWJ2 1684 aa12.65□□□□□ -0.38
USP54-201ENST00000339859 FCHSD2O94868 740 aa12.65□□□□□ -0.38
USP54-201ENST00000339859 B4GALNT3Q6L9W6 998 aa12.65□□□□□ -0.38
USP54-201ENST00000339859 GOLGA6L22H0YM25 854 aa12.65□□□□□ -0.39
USP54-201ENST00000339859 GNAT3A8MTJ3 354 aa12.64□□□□□ -0.39
USP54-201ENST00000339859 YTHDC2Q9H6S0 1430 aaKnown RBP12.64□□□□□ -0.39
USP54-201ENST00000339859 TRIM6-TRIM34B2RNG4 842 aa12.64□□□□□ -0.39
USP54-201ENST00000339859 TCP11L2Q8N4U5 519 aa12.64□□□□□ -0.39
USP54-201ENST00000339859 NLRP1Q9C000 1473 aa12.64□□□□□ -0.39
USP54-201ENST00000339859 AMOTL1Q8IY63 956 aa12.64□□□□□ -0.39
USP54-201ENST00000339859 ARHGEF12Q9NZN5 1544 aa12.63□□□□□ -0.39
USP54-201ENST00000339859 BTBD11A6QL63 1104 aa12.63□□□□□ -0.39
USP54-201ENST00000339859 ADAMTS8Q9UP79 889 aa12.63□□□□□ -0.39
USP54-201ENST00000339859 DDX19BQ9UMR2 479 aa12.63□□□□□ -0.39
USP54-201ENST00000339859 FBXW7Q969H0 707 aa12.63□□□□□ -0.39
USP54-201ENST00000339859 EFCAB6Q5THR3 1501 aa12.63□□□□□ -0.39
USP54-201ENST00000339859 SHROOM2Q13796 1616 aa12.63□□□□□ -0.39
USP54-201ENST00000339859 UGGT1Q9NYU2 1555 aa12.63□□□□□ -0.39
USP54-201ENST00000339859 ANKRD36BQ8N2N9 1353 aa12.63□□□□□ -0.39
USP54-201ENST00000339859 BCL2L13Q9BXK5 485 aa12.62□□□□□ -0.39
USP54-201ENST00000339859 TRIM34Q9BYJ4 488 aa12.62□□□□□ -0.39
USP54-201ENST00000339859 MBD5Q9P267 1494 aa12.62□□□□□ -0.39
USP54-201ENST00000339859 STARD3NLO95772 234 aa12.62□□□□□ -0.39
USP54-201ENST00000339859 PZPP20742 1482 aa12.62□□□□□ -0.39
USP54-201ENST00000339859 ABCA9Q8IUA7 1624 aa12.62□□□□□ -0.39
USP54-201ENST00000339859 G3BP1Q13283 466 aaKnown RBP eCLIP12.62□□□□□ -0.39
USP54-201ENST00000339859 HSP90AB4PQ58FF6 505 aa12.61□□□□□ -0.39
USP54-201ENST00000339859 C8orf37Q96NL8 207 aa12.61□□□□□ -0.39
USP54-201ENST00000339859 NPHP4O75161 1426 aaPredicted RBP12.61□□□□□ -0.39
USP54-201ENST00000339859 ZRSR1Q15695 479 aaKnown RBP12.61□□□□□ -0.39
USP54-201ENST00000339859 PUS7Q96PZ0 661 aaKnown RBP12.6□□□□□ -0.39
USP54-201ENST00000339859 DZIP1LQ8IYY4 767 aaKnown RBP12.6□□□□□ -0.39
USP54-201ENST00000339859 TAOK2Q9UL54 1235 aa12.6□□□□□ -0.39
USP54-201ENST00000339859 PPP1R1BQ9UD71 204 aaPredicted RBP12.6□□□□□ -0.39
USP54-201ENST00000339859 ANKRD24Q8TF21 1146 aa12.6□□□□□ -0.39
USP54-201ENST00000339859 NPATQ14207 1427 aa12.59□□□□□ -0.39
USP54-201ENST00000339859 CDK11BP21127 795 aaKnown RBP12.58□□□□□ -0.39
USP54-201ENST00000339859 NFE2L2Q16236 605 aa12.58□□□□□ -0.39
USP54-201ENST00000339859 WWC1Q8IX03 1113 aa12.58□□□□□ -0.4
USP54-201ENST00000339859 ZNF652Q9Y2D9 606 aa12.58□□□□□ -0.4
USP54-201ENST00000339859 PLEKHG1Q9ULL1 1385 aa12.58□□□□□ -0.4
USP54-201ENST00000339859 IFIT2P09913 472 aaKnown RBP12.58□□□□□ -0.4
USP54-201ENST00000339859 HDGFL1Q5TGJ6 251 aa12.58□□□□□ -0.4
USP54-201ENST00000339859 CDC42BPAQ5VT25 1732 aa12.58□□□□□ -0.4
USP54-201ENST00000339859 TWISTNBQ3B726 338 aaPredicted RBP12.58□□□□□ -0.4
USP54-201ENST00000339859 UBTFL1P0CB47 393 aaPredicted RBP12.57□□□□□ -0.4
USP54-201ENST00000339859 TCERG1O14776 1098 aaKnown RBP12.57□□□□□ -0.4
USP54-201ENST00000339859 WDR63Q8IWG1 891 aa12.57□□□□□ -0.4
USP54-201ENST00000339859 HSCBQ8IWL3 235 aa12.57□□□□□ -0.4
USP54-201ENST00000339859 DISP3Q9P2K9 1392 aa12.57□□□□□ -0.4
USP54-201ENST00000339859 PLXNC1O60486 1568 aa12.56□□□□□ -0.4
USP54-201ENST00000339859 GNL2Q13823 731 aaKnown RBP12.56□□□□□ -0.4
USP54-201ENST00000339859 ERVK-7P63135 1459 aa12.56□□□□□ -0.4
USP54-201ENST00000339859 USHBP1Q8N6Y0 703 aa12.56□□□□□ -0.4
USP54-201ENST00000339859 KDM5CP41229 1560 aa12.56□□□□□ -0.4
USP54-201ENST00000339859 FAM177BA6PVY3 158 aa12.56□□□□□ -0.4
USP54-201ENST00000339859 ZPR1O75312 459 aa12.56□□□□□ -0.4
USP54-201ENST00000339859 IFNL2Q8IZJ0 200 aa12.56□□□□□ -0.4
USP54-201ENST00000339859 CHRNA2Q15822 529 aa12.55□□□□□ -0.4
USP54-201ENST00000339859 RRP1P56182 461 aaKnown RBP12.55□□□□□ -0.4
USP54-201ENST00000339859 EMILIN1Q9Y6C2 1016 aa12.55□□□□□ -0.4
USP54-201ENST00000339859 ARHGEF10O15013 1369 aa12.55□□□□□ -0.4
USP54-201ENST00000339859 CT47B1P0C2W7 299 aaPredicted RBP12.55□□□□□ -0.4
USP54-201ENST00000339859 GNAI3P08754 354 aa12.55□□□□□ -0.4
USP54-201ENST00000339859 AAMPQ13685 434 aa12.55□□□□□ -0.4
USP54-201ENST00000339859 TOMM22Q9NS69 142 aa12.54□□□□□ -0.4
USP54-201ENST00000339859 TEX13AQ9BXU3 409 aaPredicted RBP12.54□□□□□ -0.4
USP54-201ENST00000339859 ANKRD45Q5TZF3 282 aa12.53□□□□□ -0.4
USP54-201ENST00000339859 MPRIPQ6WCQ1 1025 aa12.53□□□□□ -0.4
USP54-201ENST00000339859 MYL6BP14649 208 aa12.53□□□□□ -0.4
USP54-201ENST00000339859 SIRT1Q96EB6 747 aa12.53□□□□□ -0.4
USP54-201ENST00000339859 SLAIN2Q9P270 581 aa12.53□□□□□ -0.4
USP54-201ENST00000339859 GLI2P10070 1586 aa12.52□□□□□ -0.4
USP54-201ENST00000339859 ABCC3O15438 1527 aa12.52□□□□□ -0.4
USP54-201ENST00000339859 CDCA7Q9BWT1 371 aaPredicted RBP12.52□□□□□ -0.4
USP54-201ENST00000339859 KIF1BO60333 1816 aa12.52□□□□□ -0.41
USP54-201ENST00000339859 EXOSC9Q06265 439 aaKnown RBP12.52□□□□□ -0.41
USP54-201ENST00000339859 AK7Q96M32 723 aa12.52□□□□□ -0.41
USP54-201ENST00000339859 TAF7Q15545 349 aaPredicted RBP12.52□□□□□ -0.41
USP54-201ENST00000339859 COG6Q9Y2V7 657 aa12.52□□□□□ -0.41
USP54-201ENST00000339859 ZCRB1Q8TBF4 217 aaKnown RBP12.52□□□□□ -0.41
USP54-201ENST00000339859 A0A087WZG4 1122 aa12.51□□□□□ -0.41
USP54-201ENST00000339859 CCT4P50991 539 aaKnown RBP12.51□□□□□ -0.41
USP54-201ENST00000339859 RUFY2Q8WXA3 655 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms