RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 ZNF777Q9ULD5 760 aaPredicted RBP7.64□□□□□ -1.19
CSDE1-202ENST00000339438 CCDC144AA2RUR9 1427 aa7.64□□□□□ -1.19
CSDE1-202ENST00000339438 FAM50AQ14320 339 aaKnown RBP7.64□□□□□ -1.19
CSDE1-202ENST00000339438 B4GALNT3Q6L9W6 998 aa7.64□□□□□ -1.19
CSDE1-202ENST00000339438 CERKQ8TCT0 537 aa7.64□□□□□ -1.19
CSDE1-202ENST00000339438 TJP1Q07157 1748 aa7.63□□□□□ -1.19
CSDE1-202ENST00000339438 BRPF3Q9ULD4 1205 aa7.63□□□□□ -1.19
CSDE1-202ENST00000339438 OVOS2A0A0J9YW53 1432 aa7.63□□□□□ -1.19
CSDE1-202ENST00000339438 OVOS2Q6IE36 1432 aa7.63□□□□□ -1.19
CSDE1-202ENST00000339438 SOS2Q07890 1332 aaPredicted RBP7.63□□□□□ -1.19
CSDE1-202ENST00000339438 ATRNO75882 1429 aa7.62□□□□□ -1.19
CSDE1-202ENST00000339438 KDM3BQ7LBC6 1761 aa7.62□□□□□ -1.19
CSDE1-202ENST00000339438 TMEM94Q12767 1356 aa7.62□□□□□ -1.19
CSDE1-202ENST00000339438 DISP2A7MBM2 1401 aa7.62□□□□□ -1.19
CSDE1-202ENST00000339438 PRR36Q9H6K5 1346 aa7.62□□□□□ -1.19
CSDE1-202ENST00000339438 NRXN2Q9P2S2 1712 aa7.61□□□□□ -1.19
CSDE1-202ENST00000339438 RNF123Q5XPI4 1314 aa7.61□□□□□ -1.19
CSDE1-202ENST00000339438 TESK2Q96S53 571 aa7.61□□□□□ -1.19
CSDE1-202ENST00000339438 USP35Q9P2H5 1018 aa7.61□□□□□ -1.19
CSDE1-202ENST00000339438 DLEC1Q9Y238 1755 aa7.61□□□□□ -1.19
CSDE1-202ENST00000339438 NBPF8Q3BBV2 869 aa7.61□□□□□ -1.19
CSDE1-202ENST00000339438 BCL9O00512 1426 aa7.6□□□□□ -1.19
CSDE1-202ENST00000339438 ANP32CO43423 234 aa7.6□□□□□ -1.19
CSDE1-202ENST00000339438 GGT6Q6P531 493 aa7.6□□□□□ -1.19
CSDE1-202ENST00000339438 CHIC2Q9UKJ5 165 aa7.6□□□□□ -1.19
CSDE1-202ENST00000339438 PNPLA6Q8IY17 1366 aa7.6□□□□□ -1.19
CSDE1-202ENST00000339438 PLEKHG5O94827 1062 aa7.59□□□□□ -1.19
CSDE1-202ENST00000339438 C4AP0C0L4 1744 aa7.59□□□□□ -1.19
CSDE1-202ENST00000339438 C4BP0C0L5 1744 aa7.59□□□□□ -1.19
CSDE1-202ENST00000339438 THEMISQ8N1K5 641 aaPredicted RBP7.59□□□□□ -1.19
CSDE1-202ENST00000339438 BCORQ6W2J9 1755 aa7.59□□□□□ -1.19
CSDE1-202ENST00000339438 DOT1LQ8TEK3 1739 aa7.59□□□□□ -1.19
CSDE1-202ENST00000339438 STAC3Q96MF2 364 aa7.59□□□□□ -1.19
CSDE1-202ENST00000339438 HIRIP3Q9BW71 556 aaPredicted RBP7.59□□□□□ -1.19
CSDE1-202ENST00000339438 HNRNPUQ00839 825 aaKnown RBP eCLIP7.58□□□□□ -1.2
CSDE1-202ENST00000339438 CCDC184Q52MB2 194 aa7.58□□□□□ -1.2
CSDE1-202ENST00000339438 SIN3AQ96ST3 1273 aa7.58□□□□□ -1.2
CSDE1-202ENST00000339438 USP19O94966 1318 aa7.58□□□□□ -1.2
CSDE1-202ENST00000339438 BTAF1O14981 1849 aa7.58□□□□□ -1.2
CSDE1-202ENST00000339438 SBNO1A3KN83 1393 aa7.58□□□□□ -1.2
CSDE1-202ENST00000339438 TIMELESSQ9UNS1 1208 aa7.57□□□□□ -1.2
CSDE1-202ENST00000339438 UBR3Q6ZT12 1888 aa7.57□□□□□ -1.2
CSDE1-202ENST00000339438 USP31Q70CQ4 1352 aa7.57□□□□□ -1.2
CSDE1-202ENST00000339438 LAMB1P07942 1786 aa7.57□□□□□ -1.2
CSDE1-202ENST00000339438 ARFGEF2Q9Y6D5 1785 aa7.57□□□□□ -1.2
CSDE1-202ENST00000339438 RTL5Q5HYW3 569 aaPredicted RBP7.57□□□□□ -1.2
CSDE1-202ENST00000339438 ZBTB47Q9UFB7 747 aaPredicted RBP7.57□□□□□ -1.2
CSDE1-202ENST00000339438 C5P01031 1676 aa7.57□□□□□ -1.2
CSDE1-202ENST00000339438 FOXD1Q16676 465 aa7.56□□□□□ -1.2
CSDE1-202ENST00000339438 A0A1B0GUL6 1792 aa7.56□□□□□ -1.2
CSDE1-202ENST00000339438 ZMYND15Q9H091 742 aa7.56□□□□□ -1.2
CSDE1-202ENST00000339438 LAMB4A4D0S4 1761 aa7.55□□□□□ -1.2
CSDE1-202ENST00000339438 RSPH6AQ9H0K4 717 aa7.55□□□□□ -1.2
CSDE1-202ENST00000339438 MRC1P22897 1456 aa7.55□□□□□ -1.2
CSDE1-202ENST00000339438 UTRNP46939 3433 aa7.54□□□□□ -1.2
CSDE1-202ENST00000339438 ZBED9Q6R2W3 1325 aa7.54□□□□□ -1.2
CSDE1-202ENST00000339438 NEFMP07197 916 aa7.54□□□□□ -1.2
CSDE1-202ENST00000339438 DCAF11Q8TEB1 546 aa7.54□□□□□ -1.2
CSDE1-202ENST00000339438 PUS7Q96PZ0 661 aaKnown RBP7.54□□□□□ -1.2
CSDE1-202ENST00000339438 BRD4O60885 1362 aaPredicted RBP7.54□□□□□ -1.2
CSDE1-202ENST00000339438 ANP32AP39687 249 aaKnown RBP7.54□□□□□ -1.2
CSDE1-202ENST00000339438 ANKLE2Q86XL3 938 aa7.54□□□□□ -1.2
CSDE1-202ENST00000339438 GSE1Q14687 1217 aa7.53□□□□□ -1.2
CSDE1-202ENST00000339438 DMRT2Q9Y5R5 561 aa7.53□□□□□ -1.2
CSDE1-202ENST00000339438 CPDO75976 1380 aa7.53□□□□□ -1.2
CSDE1-202ENST00000339438 USP6P35125 1406 aa7.53□□□□□ -1.2
CSDE1-202ENST00000339438 FAM43AQ8N2R8 423 aa7.53□□□□□ -1.2
CSDE1-202ENST00000339438 TNS3Q68CZ2 1445 aa7.52□□□□□ -1.2
CSDE1-202ENST00000339438 PLEKHG2Q9H7P9 1386 aa7.52□□□□□ -1.21
CSDE1-202ENST00000339438 MLECQ14165 292 aa7.51□□□□□ -1.21
CSDE1-202ENST00000339438 BRINP3Q76B58 766 aa7.51□□□□□ -1.21
CSDE1-202ENST00000339438 AEBP2Q6ZN18 517 aaPredicted RBP7.51□□□□□ -1.21
CSDE1-202ENST00000339438 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.51□□□□□ -1.21
CSDE1-202ENST00000339438 FRAT1Q92837 279 aaPredicted RBP7.5□□□□□ -1.21
CSDE1-202ENST00000339438 LAS1LQ9Y4W2 734 aaKnown RBP7.5□□□□□ -1.21
CSDE1-202ENST00000339438 RGS12O14924 1447 aa7.5□□□□□ -1.21
CSDE1-202ENST00000339438 DISP3Q9P2K9 1392 aa7.5□□□□□ -1.21
CSDE1-202ENST00000339438 ONECUT3O60422 494 aaPredicted RBP7.5□□□□□ -1.21
CSDE1-202ENST00000339438 INSRP06213 1382 aa7.5□□□□□ -1.21
CSDE1-202ENST00000339438 ILDR2Q71H61 639 aa7.49□□□□□ -1.21
CSDE1-202ENST00000339438 COL5A2P05997 1499 aaPredicted RBP7.49□□□□□ -1.21
CSDE1-202ENST00000339438 PODXL2Q9NZ53 605 aa7.49□□□□□ -1.21
CSDE1-202ENST00000339438 LAMB2P55268 1798 aa7.48□□□□□ -1.21
CSDE1-202ENST00000339438 PLEKHG3A1L390 1219 aa7.48□□□□□ -1.21
CSDE1-202ENST00000339438 TXNDC2Q86VQ3 553 aa7.48□□□□□ -1.21
CSDE1-202ENST00000339438 BACH2Q9BYV9 841 aa7.48□□□□□ -1.21
CSDE1-202ENST00000339438 RRAGDQ9NQL2 400 aaPredicted RBP7.48□□□□□ -1.21
CSDE1-202ENST00000339438 DAXXQ9UER7 740 aaPredicted RBP7.48□□□□□ -1.21
CSDE1-202ENST00000339438 NFKBIBQ15653 356 aa7.47□□□□□ -1.21
CSDE1-202ENST00000339438 ARID4BQ4LE39 1312 aaPredicted RBP7.47□□□□□ -1.21
CSDE1-202ENST00000339438 SCN7AQ01118 1682 aa7.47□□□□□ -1.21
CSDE1-202ENST00000339438 NBPF1Q3BBV0 1214 aa7.47□□□□□ -1.21
CSDE1-202ENST00000339438 PPM1GO15355 546 aaPredicted RBP7.46□□□□□ -1.21
CSDE1-202ENST00000339438 AMOTL2Q9Y2J4 779 aa7.46□□□□□ -1.21
CSDE1-202ENST00000339438 LTBP1Q14766 1721 aa7.45□□□□□ -1.22
CSDE1-202ENST00000339438 VSIG10Q8N0Z9 540 aa7.45□□□□□ -1.22
CSDE1-202ENST00000339438 PRKRIP1Q9H875 184 aaPredicted RBP7.45□□□□□ -1.22
CSDE1-202ENST00000339438 GOLGB1Q14789 3259 aaKnown RBP7.45□□□□□ -1.22
CSDE1-202ENST00000339438 PDE4AP27815 886 aa7.45□□□□□ -1.22
CSDE1-202ENST00000339438 L3MBTL2Q969R5 705 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms