RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 CDC42BPGQ6DT37 1551 aa5.58□□□□□ -1.52
MCF2-201ENST00000338585 TOPAZ1Q8N9V7 1692 aa5.57□□□□□ -1.52
MCF2-201ENST00000338585 NALCNQ8IZF0 1738 aa5.57□□□□□ -1.52
MCF2-201ENST00000338585 ZRANB1Q9UGI0 708 aa5.57□□□□□ -1.52
MCF2-201ENST00000338585 RGPD8O14715 1765 aaPredicted RBP5.57□□□□□ -1.52
MCF2-201ENST00000338585 NME9Q86XW9 330 aa5.56□□□□□ -1.52
MCF2-201ENST00000338585 PMFBP1Q8TBY8 1022 aa5.56□□□□□ -1.52
MCF2-201ENST00000338585 ACEP12821 1306 aa5.56□□□□□ -1.52
MCF2-201ENST00000338585 NSD2O96028 1365 aa5.56□□□□□ -1.52
MCF2-201ENST00000338585 ITSN1Q15811 1721 aa5.56□□□□□ -1.52
MCF2-201ENST00000338585 MON2Q7Z3U7 1717 aa5.56□□□□□ -1.52
MCF2-201ENST00000338585 NWD1Q149M9 1564 aa5.56□□□□□ -1.52
MCF2-201ENST00000338585 AKAP12Q02952 1782 aa5.56□□□□□ -1.52
MCF2-201ENST00000338585 EDC4Q6P2E9 1401 aaKnown RBP5.56□□□□□ -1.52
MCF2-201ENST00000338585 PLEKHG3A1L390 1219 aa5.56□□□□□ -1.52
MCF2-201ENST00000338585 KCNA4P22459 653 aa5.56□□□□□ -1.52
MCF2-201ENST00000338585 FBLN1P23142 703 aa5.56□□□□□ -1.52
MCF2-201ENST00000338585 MTHFSP49914 203 aa5.56□□□□□ -1.52
MCF2-201ENST00000338585 ADAMTS8Q9UP79 889 aa5.56□□□□□ -1.52
MCF2-201ENST00000338585 KIF20BQ96Q89 1820 aa5.56□□□□□ -1.52
MCF2-201ENST00000338585 FMN2Q9NZ56 1722 aa5.55□□□□□ -1.52
MCF2-201ENST00000338585 C14orf37Q86TY3 774 aa5.55□□□□□ -1.52
MCF2-201ENST00000338585 ANKRD26Q9UPS8 1709 aa5.55□□□□□ -1.52
MCF2-201ENST00000338585 ZBED9Q6R2W3 1325 aa5.55□□□□□ -1.52
MCF2-201ENST00000338585 ADGRL3Q9HAR2 1447 aa5.55□□□□□ -1.52
MCF2-201ENST00000338585 STRCP1A6NGW2 1772 aa5.55□□□□□ -1.52
MCF2-201ENST00000338585 STRCQ7RTU9 1775 aa5.55□□□□□ -1.52
MCF2-201ENST00000338585 PROSER2Q86WR7 435 aaPredicted RBP5.55□□□□□ -1.52
MCF2-201ENST00000338585 SALL2Q9Y467 1007 aaPredicted RBP5.55□□□□□ -1.52
MCF2-201ENST00000338585 GTF3C3Q9Y5Q9 886 aa5.55□□□□□ -1.52
MCF2-201ENST00000338585 USP6P35125 1406 aa5.54□□□□□ -1.52
MCF2-201ENST00000338585 WDR43Q15061 677 aaKnown RBP eCLIP5.54□□□□□ -1.52
MCF2-201ENST00000338585 POLR3AO14802 1390 aaPredicted RBP5.54□□□□□ -1.52
MCF2-201ENST00000338585 BLMP54132 1417 aaPredicted RBP5.54□□□□□ -1.52
MCF2-201ENST00000338585 ANKARQ7Z5J8 1434 aa5.54□□□□□ -1.52
MCF2-201ENST00000338585 NRKQ7Z2Y5 1582 aa5.54□□□□□ -1.52
MCF2-201ENST00000338585 NGDNQ8NEJ9 315 aaKnown RBP5.54□□□□□ -1.52
MCF2-201ENST00000338585 ZNF692Q9BU19 519 aaPredicted RBP5.54□□□□□ -1.52
MCF2-201ENST00000338585 TTC21BQ7Z4L5 1316 aa5.54□□□□□ -1.52
MCF2-201ENST00000338585 CCDC146Q8IYE0 955 aa5.53□□□□□ -1.52
MCF2-201ENST00000338585 SSH2Q76I76 1423 aa5.53□□□□□ -1.52
MCF2-201ENST00000338585 SHPRHQ149N8 1683 aa5.53□□□□□ -1.52
MCF2-201ENST00000338585 FXR2P51116 673 aaKnown RBP eCLIP5.53□□□□□ -1.52
MCF2-201ENST00000338585 TMEM94Q12767 1356 aa5.53□□□□□ -1.52
MCF2-201ENST00000338585 ORAI2Q96SN7 254 aa5.52□□□□□ -1.53
MCF2-201ENST00000338585 COL3A1P02461 1466 aaPredicted RBP5.52□□□□□ -1.53
MCF2-201ENST00000338585 PPM1GO15355 546 aaPredicted RBP5.52□□□□□ -1.53
MCF2-201ENST00000338585 ESCO1Q5FWF5 840 aa5.52□□□□□ -1.53
MCF2-201ENST00000338585 COG3Q96JB2 828 aa5.52□□□□□ -1.53
MCF2-201ENST00000338585 POLKQ9UBT6 870 aa5.52□□□□□ -1.53
MCF2-201ENST00000338585 PHF8Q9UPP1 1060 aa5.52□□□□□ -1.53
MCF2-201ENST00000338585 EMILIN1Q9Y6C2 1016 aa5.52□□□□□ -1.53
MCF2-201ENST00000338585 OVOS2A0A0J9YW53 1432 aa5.52□□□□□ -1.53
MCF2-201ENST00000338585 OVOS2Q6IE36 1432 aa5.52□□□□□ -1.53
MCF2-201ENST00000338585 INSRP06213 1382 aa5.52□□□□□ -1.53
MCF2-201ENST00000338585 ZNF335Q9H4Z2 1342 aaPredicted RBP5.52□□□□□ -1.53
MCF2-201ENST00000338585 RRS1Q15050 365 aaKnown RBP5.52□□□□□ -1.53
MCF2-201ENST00000338585 CFAP53Q96M91 514 aa5.52□□□□□ -1.53
MCF2-201ENST00000338585 SOX12O15370 315 aa5.51□□□□□ -1.53
MCF2-201ENST00000338585 NUTM2GQ5VZR2 741 aa5.51□□□□□ -1.53
MCF2-201ENST00000338585 C19orf44Q9H6X5 657 aa5.51□□□□□ -1.53
MCF2-201ENST00000338585 XPCQ01831 940 aaPredicted RBP5.51□□□□□ -1.53
MCF2-201ENST00000338585 MAP2P11137 1827 aaKnown RBP5.51□□□□□ -1.53
MCF2-201ENST00000338585 PIK3C2AO00443 1686 aa5.5□□□□□ -1.53
MCF2-201ENST00000338585 PNPLA6Q8IY17 1366 aa5.5□□□□□ -1.53
MCF2-201ENST00000338585 TTC21AQ8NDW8 1320 aa5.5□□□□□ -1.53
MCF2-201ENST00000338585 APAF1O14727 1248 aa5.5□□□□□ -1.53
MCF2-201ENST00000338585 PAK3O75914 559 aaPredicted RBP5.5□□□□□ -1.53
MCF2-201ENST00000338585 U2AF1L5P0DN76 240 aaPredicted RBP5.5□□□□□ -1.53
MCF2-201ENST00000338585 U2AF1Q01081 240 aaKnown RBP eCLIP5.5□□□□□ -1.53
MCF2-201ENST00000338585 CDCA7LQ96GN5 454 aa5.5□□□□□ -1.53
MCF2-201ENST00000338585 C1orf167Q5SNV9 1468 aa5.5□□□□□ -1.53
MCF2-201ENST00000338585 AATKQ6ZMQ8 1374 aa5.5□□□□□ -1.53
MCF2-201ENST00000338585 U2SURPO15042 1029 aaKnown RBP5.5□□□□□ -1.53
MCF2-201ENST00000338585 FOXO3O43524 673 aa5.5□□□□□ -1.53
MCF2-201ENST00000338585 XIRP1Q702N8 1843 aaKnown RBP5.5□□□□□ -1.53
MCF2-201ENST00000338585 NLRP6P59044 892 aa5.49□□□□□ -1.53
MCF2-201ENST00000338585 NCBP3Q53F19 620 aaKnown RBP5.49□□□□□ -1.53
MCF2-201ENST00000338585 MST1RQ04912 1400 aa5.49□□□□□ -1.53
MCF2-201ENST00000338585 SMG6Q86US8 1419 aaKnown RBP5.49□□□□□ -1.53
MCF2-201ENST00000338585 USP31Q70CQ4 1352 aa5.49□□□□□ -1.53
MCF2-201ENST00000338585 LRRC7Q96NW7 1537 aa5.49□□□□□ -1.53
MCF2-201ENST00000338585 DIAPH1O60610 1272 aaKnown RBP5.49□□□□□ -1.53
MCF2-201ENST00000338585 ATF3P18847 181 aa5.49□□□□□ -1.53
MCF2-201ENST00000338585 PSME1Q06323 249 aa5.49□□□□□ -1.53
MCF2-201ENST00000338585 ABTB2Q8N961 1025 aa5.49□□□□□ -1.53
MCF2-201ENST00000338585 DDX17Q92841 729 aaKnown RBP5.49□□□□□ -1.53
MCF2-201ENST00000338585 RRP7AQ9Y3A4 280 aaKnown RBP5.49□□□□□ -1.53
MCF2-201ENST00000338585 SUPT16HQ9Y5B9 1047 aaKnown RBP5.49□□□□□ -1.53
MCF2-201ENST00000338585 MARF1Q9Y4F3 1742 aaKnown RBP5.49□□□□□ -1.53
MCF2-201ENST00000338585 CDK12Q9NYV4 1490 aaPredicted RBP5.49□□□□□ -1.53
MCF2-201ENST00000338585 PLEKHG5O94827 1062 aa5.48□□□□□ -1.53
MCF2-201ENST00000338585 NUDCQ9Y266 331 aa5.48□□□□□ -1.53
MCF2-201ENST00000338585 PEAK1Q9H792 1746 aa5.48□□□□□ -1.53
MCF2-201ENST00000338585 MAP3K19Q56UN5 1328 aa5.48□□□□□ -1.53
MCF2-201ENST00000338585 ZNF521Q96K83 1311 aa5.48□□□□□ -1.53
MCF2-201ENST00000338585 NCOA3Q9Y6Q9 1424 aa5.48□□□□□ -1.53
MCF2-201ENST00000338585 NEUROD2Q15784 382 aa5.48□□□□□ -1.53
MCF2-201ENST00000338585 TCP11L2Q8N4U5 519 aa5.48□□□□□ -1.53
MCF2-201ENST00000338585 RUNDC1Q96C34 613 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms