RNA–Protein interactions for RNA: ENST00000334504.11

COL4A6-201, Transcript of collagen type IV alpha 6 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A6, Length 6,700 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-201ENST00000334504 CALCOCO1Q9P1Z2 691 aa11.68□□□□□ -0.54
COL4A6-201ENST00000334504 RBM25P49756 843 aaKnown RBP11.67□□□□□ -0.54
COL4A6-201ENST00000334504 BACH2Q9BYV9 841 aa11.67□□□□□ -0.54
COL4A6-201ENST00000334504 FKBP5Q13451 457 aaPredicted RBP11.67□□□□□ -0.54
COL4A6-201ENST00000334504 ZNHIT6Q9NWK9 470 aaKnown RBP11.67□□□□□ -0.54
COL4A6-201ENST00000334504 MCM2P49736 904 aa11.67□□□□□ -0.54
COL4A6-201ENST00000334504 TMCO3Q6UWJ1 677 aa11.67□□□□□ -0.54
COL4A6-201ENST00000334504 EID1Q9Y6B2 187 aa11.67□□□□□ -0.54
COL4A6-201ENST00000334504 C1orf141Q5JVX7 400 aa11.66□□□□□ -0.54
COL4A6-201ENST00000334504 RUNDC1Q96C34 613 aa11.66□□□□□ -0.54
COL4A6-201ENST00000334504 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.66□□□□□ -0.54
COL4A6-201ENST00000334504 MCM4P33991 863 aa11.66□□□□□ -0.54
COL4A6-201ENST00000334504 CNTROBQ8N137 903 aa11.66□□□□□ -0.54
COL4A6-201ENST00000334504 CUX2O14529 1486 aa11.66□□□□□ -0.54
COL4A6-201ENST00000334504 K7ELQ4 463 aaPredicted RBP11.66□□□□□ -0.54
COL4A6-201ENST00000334504 STK38Q15208 465 aa11.66□□□□□ -0.54
COL4A6-201ENST00000334504 IPO4Q8TEX9 1081 aaKnown RBP11.66□□□□□ -0.54
COL4A6-201ENST00000334504 HSP90AB4PQ58FF6 505 aa11.66□□□□□ -0.54
COL4A6-201ENST00000334504 CLASRPQ8N2M8 674 aaKnown RBP11.66□□□□□ -0.54
COL4A6-201ENST00000334504 SHTN1A0MZ66 631 aa11.65□□□□□ -0.54
COL4A6-201ENST00000334504 ATP2B1P20020 1258 aa11.65□□□□□ -0.54
COL4A6-201ENST00000334504 RBM33Q96EV2 1170 aaKnown RBP11.65□□□□□ -0.54
COL4A6-201ENST00000334504 UBXN4Q92575 508 aa11.65□□□□□ -0.54
COL4A6-201ENST00000334504 WASHC4Q2M389 1173 aa11.65□□□□□ -0.54
COL4A6-201ENST00000334504 XBP1P17861 261 aa11.64□□□□□ -0.55
COL4A6-201ENST00000334504 PDCP20941 246 aa11.64□□□□□ -0.55
COL4A6-201ENST00000334504 COG3Q96JB2 828 aa11.64□□□□□ -0.55
COL4A6-201ENST00000334504 CBFA2T2O43439 604 aa11.64□□□□□ -0.55
COL4A6-201ENST00000334504 DIAPH1O60610 1272 aaKnown RBP11.64□□□□□ -0.55
COL4A6-201ENST00000334504 TEFQ10587 303 aa11.64□□□□□ -0.55
COL4A6-201ENST00000334504 CARMIL2Q6F5E8 1435 aa11.64□□□□□ -0.55
COL4A6-201ENST00000334504 PDS5BQ9NTI5 1447 aa11.64□□□□□ -0.55
COL4A6-201ENST00000334504 PIP4K2AP48426 406 aaPredicted RBP11.64□□□□□ -0.55
COL4A6-201ENST00000334504 LRRFIP2Q9Y608 721 aaKnown RBP11.64□□□□□ -0.55
COL4A6-201ENST00000334504 POLR3GO15318 223 aaPredicted RBP11.63□□□□□ -0.55
COL4A6-201ENST00000334504 ANKRD18AQ8IVF6 992 aa11.63□□□□□ -0.55
COL4A6-201ENST00000334504 IQCEQ6IPM2 695 aa11.63□□□□□ -0.55
COL4A6-201ENST00000334504 XPCQ01831 940 aaPredicted RBP11.63□□□□□ -0.55
COL4A6-201ENST00000334504 RSPH4AQ5TD94 716 aa11.63□□□□□ -0.55
COL4A6-201ENST00000334504 WDR33Q9C0J8 1336 aaKnown RBP11.63□□□□□ -0.55
COL4A6-201ENST00000334504 FSD1Q9BTV5 496 aa11.63□□□□□ -0.55
COL4A6-201ENST00000334504 NEUROD6Q96NK8 337 aa11.63□□□□□ -0.55
COL4A6-201ENST00000334504 FILIP1Q7Z7B0 1213 aa11.62□□□□□ -0.55
COL4A6-201ENST00000334504 GTF2F1P35269 517 aaKnown RBP eCLIP11.62□□□□□ -0.55
COL4A6-201ENST00000334504 SYCP1Q15431 976 aa11.62□□□□□ -0.55
COL4A6-201ENST00000334504 PPP4R3BQ5MIZ7 849 aa11.62□□□□□ -0.55
COL4A6-201ENST00000334504 VPS37DQ86XT2 251 aa11.62□□□□□ -0.55
COL4A6-201ENST00000334504 BBXQ8WY36 941 aaPredicted RBP11.62□□□□□ -0.55
COL4A6-201ENST00000334504 DACH1Q9UI36 760 aa11.62□□□□□ -0.55
COL4A6-201ENST00000334504 FYB1O15117 783 aa11.62□□□□□ -0.55
COL4A6-201ENST00000334504 CYB5RLQ6IPT4 315 aa11.62□□□□□ -0.55
COL4A6-201ENST00000334504 CDCA7LQ96GN5 454 aa11.62□□□□□ -0.55
COL4A6-201ENST00000334504 CNTLNQ9NXG0 1405 aa11.61□□□□□ -0.55
COL4A6-201ENST00000334504 SYCE3A1L190 88 aa11.61□□□□□ -0.55
COL4A6-201ENST00000334504 DDX58O95786 925 aaKnown RBP11.61□□□□□ -0.55
COL4A6-201ENST00000334504 TNNT1P13805 278 aa11.61□□□□□ -0.55
COL4A6-201ENST00000334504 STK3Q13188 491 aa11.61□□□□□ -0.55
COL4A6-201ENST00000334504 ME1P48163 572 aa11.61□□□□□ -0.55
COL4A6-201ENST00000334504 MTMR7Q9Y216 660 aa11.61□□□□□ -0.55
COL4A6-201ENST00000334504 SPDYE4A6NLX3 237 aa11.6□□□□□ -0.55
COL4A6-201ENST00000334504 GNAI1P63096 354 aa11.6□□□□□ -0.55
COL4A6-201ENST00000334504 TTC5Q8N0Z6 440 aa11.6□□□□□ -0.55
COL4A6-201ENST00000334504 CRACR2AQ9BSW2 395 aa11.6□□□□□ -0.55
COL4A6-201ENST00000334504 DDX11Q96FC9 970 aa11.6□□□□□ -0.55
COL4A6-201ENST00000334504 CECR2Q9BXF3 1484 aa11.6□□□□□ -0.55
COL4A6-201ENST00000334504 EZRP15311 586 aaKnown RBP11.6□□□□□ -0.55
COL4A6-201ENST00000334504 CDK5RAP3Q96JB5 506 aa11.6□□□□□ -0.55
COL4A6-201ENST00000334504 TXLNAP40222 546 aa11.6□□□□□ -0.55
COL4A6-201ENST00000334504 HNRNPMP52272 730 aaKnown RBP eCLIP11.6□□□□□ -0.55
COL4A6-201ENST00000334504 KRT85P78386 507 aa11.6□□□□□ -0.55
COL4A6-201ENST00000334504 PTPN14Q15678 1187 aa11.6□□□□□ -0.55
COL4A6-201ENST00000334504 RNF187Q5TA31 235 aaPredicted RBP11.6□□□□□ -0.55
COL4A6-201ENST00000334504 NUP62CLQ9H1M0 184 aa11.6□□□□□ -0.55
COL4A6-201ENST00000334504 LUC7LQ9NQ29 371 aaKnown RBP11.6□□□□□ -0.55
COL4A6-201ENST00000334504 CCDC7Q96M83 1385 aa11.6□□□□□ -0.55
COL4A6-201ENST00000334504 GOLGA6L10A0A0M3HER8 536 aa11.6□□□□□ -0.55
COL4A6-201ENST00000334504 EFCAB2Q5VUJ9 269 aa11.6□□□□□ -0.55
COL4A6-201ENST00000334504 GBP3Q9H0R5 595 aa11.6□□□□□ -0.55
COL4A6-201ENST00000334504 C1orf115Q9H7X2 142 aa11.6□□□□□ -0.55
COL4A6-201ENST00000334504 AKNAQ7Z591 1439 aa11.59□□□□□ -0.55
COL4A6-201ENST00000334504 KIF3BO15066 747 aa11.59□□□□□ -0.55
COL4A6-201ENST00000334504 UBTFL1P0CB47 393 aaPredicted RBP11.59□□□□□ -0.55
COL4A6-201ENST00000334504 MAP2K1Q02750 393 aaPredicted RBP11.59□□□□□ -0.55
COL4A6-201ENST00000334504 TXLNBQ8N3L3 684 aa11.59□□□□□ -0.55
COL4A6-201ENST00000334504 TSPYL4Q9UJ04 414 aa11.59□□□□□ -0.55
COL4A6-201ENST00000334504 CCDC144AA2RUR9 1427 aa11.59□□□□□ -0.55
COL4A6-201ENST00000334504 EVC2Q86UK5 1308 aa11.59□□□□□ -0.55
COL4A6-201ENST00000334504 CCDC148Q8NFR7 591 aa11.59□□□□□ -0.55
COL4A6-201ENST00000334504 BAZ1AQ9NRL2 1556 aaPredicted RBP11.59□□□□□ -0.55
COL4A6-201ENST00000334504 SLC26A8Q96RN1 970 aa11.59□□□□□ -0.55
COL4A6-201ENST00000334504 TANGO6Q9C0B7 1094 aa11.58□□□□□ -0.56
COL4A6-201ENST00000334504 CFAP45Q9UL16 551 aa11.58□□□□□ -0.56
COL4A6-201ENST00000334504 CCAR1Q8IX12 1150 aaKnown RBP11.58□□□□□ -0.56
COL4A6-201ENST00000334504 SPATA32Q96LK8 384 aa11.58□□□□□ -0.56
COL4A6-201ENST00000334504 UPF3BQ9BZI7 483 aaKnown RBP11.58□□□□□ -0.56
COL4A6-201ENST00000334504 CASQ1P31415 396 aa11.58□□□□□ -0.56
COL4A6-201ENST00000334504 CEP57L1Q8IYX8 460 aa11.58□□□□□ -0.56
COL4A6-201ENST00000334504 GBP2P32456 591 aaPredicted RBP11.58□□□□□ -0.56
COL4A6-201ENST00000334504 JMYQ8N9B5 988 aa11.58□□□□□ -0.56
COL4A6-201ENST00000334504 CIZ1Q9ULV3 898 aaPredicted RBP11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms