RNA–Protein interactions for RNA: ENST00000334060.8

SHOX-201, Transcript of short stature homeobox, humanhuman

TSL 5 BASIC

Gene SHOX, Length 1,951 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-201ENST00000334060 GGNBP2Q9H3C7 697 aa22.71■■□□□ 1.23
SHOX-201ENST00000334060 KIF1AQ12756 1690 aa22.7■■□□□ 1.22
SHOX-201ENST00000334060 PXDNQ92626 1479 aa22.7■■□□□ 1.22
SHOX-201ENST00000334060 TTC21BQ7Z4L5 1316 aa22.69■■□□□ 1.22
SHOX-201ENST00000334060 PAK3O75914 559 aaPredicted RBP22.69■■□□□ 1.22
SHOX-201ENST00000334060 PSME1Q06323 249 aa22.69■■□□□ 1.22
SHOX-201ENST00000334060 KRT28Q7Z3Y7 464 aa22.69■■□□□ 1.22
SHOX-201ENST00000334060 TRPM3Q9HCF6 1732 aaPredicted RBP22.69■■□□□ 1.22
SHOX-201ENST00000334060 FYB1O15117 783 aa22.68■■□□□ 1.22
SHOX-201ENST00000334060 TOM1O60784 492 aa22.68■■□□□ 1.22
SHOX-201ENST00000334060 PIK3C2AO00443 1686 aa22.67■■□□□ 1.22
SHOX-201ENST00000334060 IQSEC2Q5JU85 1478 aa22.67■■□□□ 1.22
SHOX-201ENST00000334060 NHSL1Q5SYE7 1610 aa22.67■■□□□ 1.22
SHOX-201ENST00000334060 KNSTRNQ9Y448 316 aa22.67■■□□□ 1.22
SHOX-201ENST00000334060 EDC4Q6P2E9 1401 aaKnown RBP22.67■■□□□ 1.22
SHOX-201ENST00000334060 TNNT2P45379 298 aaPredicted RBP22.64■■□□□ 1.21
SHOX-201ENST00000334060 MARF1Q9Y4F3 1742 aaKnown RBP22.64■■□□□ 1.21
SHOX-201ENST00000334060 LMOD2Q6P5Q4 547 aa22.63■■□□□ 1.21
SHOX-201ENST00000334060 ZNF692Q9BU19 519 aaPredicted RBP22.63■■□□□ 1.21
SHOX-201ENST00000334060 NPHP3Q7Z494 1330 aa22.62■■□□□ 1.21
SHOX-201ENST00000334060 SOX12O15370 315 aa22.62■■□□□ 1.21
SHOX-201ENST00000334060 SOS2Q07890 1332 aaPredicted RBP22.62■■□□□ 1.21
SHOX-201ENST00000334060 KIF20BQ96Q89 1820 aa22.61■■□□□ 1.21
SHOX-201ENST00000334060 MIER1Q8N108 512 aa22.61■■□□□ 1.21
SHOX-201ENST00000334060 CABLES1Q8TDN4 633 aa22.61■■□□□ 1.21
SHOX-201ENST00000334060 ABTB2Q8N961 1025 aa22.59■■□□□ 1.21
SHOX-201ENST00000334060 ALS2Q96Q42 1657 aa22.59■■□□□ 1.21
SHOX-201ENST00000334060 CGNL1Q0VF96 1302 aa22.59■■□□□ 1.21
SHOX-201ENST00000334060 AHDC1Q5TGY3 1603 aaPredicted RBP22.59■■□□□ 1.21
SHOX-201ENST00000334060 COL16A1Q07092 1604 aaPredicted RBP22.58■■□□□ 1.21
SHOX-201ENST00000334060 CCDC184Q52MB2 194 aa22.58■■□□□ 1.2
SHOX-201ENST00000334060 PHLPP1O60346 1717 aa22.57■■□□□ 1.2
SHOX-201ENST00000334060 PRKRIP1Q9H875 184 aaPredicted RBP22.57■■□□□ 1.2
SHOX-201ENST00000334060 SPATA31A3Q5VYP0 1347 aa22.57■■□□□ 1.2
SHOX-201ENST00000334060 OVOS2A0A0J9YW53 1432 aa22.57■■□□□ 1.2
SHOX-201ENST00000334060 OVOS2Q6IE36 1432 aa22.57■■□□□ 1.2
SHOX-201ENST00000334060 TNS3Q68CZ2 1445 aa22.56■■□□□ 1.2
SHOX-201ENST00000334060 MED1Q15648 1581 aaPredicted RBP22.56■■□□□ 1.2
SHOX-201ENST00000334060 NLRP6P59044 892 aa22.56■■□□□ 1.2
SHOX-201ENST00000334060 HSPA1LP34931 641 aa22.54■■□□□ 1.2
SHOX-201ENST00000334060 PARD3Q8TEW0 1356 aa22.54■■□□□ 1.2
SHOX-201ENST00000334060 TTC21AQ8NDW8 1320 aa22.53■■□□□ 1.2
SHOX-201ENST00000334060 SBNO1A3KN83 1393 aa22.53■■□□□ 1.2
SHOX-201ENST00000334060 ANKRD26Q9UPS8 1709 aa22.52■■□□□ 1.2
SHOX-201ENST00000334060 MORC1Q86VD1 984 aa22.52■■□□□ 1.2
SHOX-201ENST00000334060 RRS1Q15050 365 aaKnown RBP22.51■■□□□ 1.19
SHOX-201ENST00000334060 NPC1L1Q9UHC9 1359 aa22.5■■□□□ 1.19
SHOX-201ENST00000334060 CRYBG1Q9Y4K1 1723 aa22.49■■□□□ 1.19
SHOX-201ENST00000334060 COG3Q96JB2 828 aa22.49■■□□□ 1.19
SHOX-201ENST00000334060 USP31Q70CQ4 1352 aa22.49■■□□□ 1.19
SHOX-201ENST00000334060 ANP32CO43423 234 aa22.49■■□□□ 1.19
SHOX-201ENST00000334060 EMILIN1Q9Y6C2 1016 aa22.49■■□□□ 1.19
SHOX-201ENST00000334060 PNPLA6Q8IY17 1366 aa22.47■■□□□ 1.19
SHOX-201ENST00000334060 PPP2R1AP30153 589 aa22.47■■□□□ 1.19
SHOX-201ENST00000334060 PHRF1Q9P1Y6 1649 aaKnown RBP22.46■■□□□ 1.19
SHOX-201ENST00000334060 USP54Q70EL1 1684 aa22.46■■□□□ 1.19
SHOX-201ENST00000334060 USP19O94966 1318 aa22.46■■□□□ 1.19
SHOX-201ENST00000334060 NSD2O96028 1365 aa22.45■■□□□ 1.19
SHOX-201ENST00000334060 NFAT5O94916 1531 aa22.45■■□□□ 1.18
SHOX-201ENST00000334060 ABCA3Q99758 1704 aa22.45■■□□□ 1.18
SHOX-201ENST00000334060 ZBTB7CA1YPR0 619 aa22.45■■□□□ 1.18
SHOX-201ENST00000334060 ZC3H6P61129 1189 aaKnown RBP22.45■■□□□ 1.18
SHOX-201ENST00000334060 PEAK1Q9H792 1746 aa22.45■■□□□ 1.18
SHOX-201ENST00000334060 SLIT3O75094 1523 aa22.44■■□□□ 1.18
SHOX-201ENST00000334060 GCP02774 474 aa22.43■■□□□ 1.18
SHOX-201ENST00000334060 NLRP13Q86W25 1043 aa22.43■■□□□ 1.18
SHOX-201ENST00000334060 LRRC59Q96AG4 307 aaKnown RBP22.43■■□□□ 1.18
SHOX-201ENST00000334060 BRD4O60885 1362 aaPredicted RBP22.43■■□□□ 1.18
SHOX-201ENST00000334060 POLKQ9UBT6 870 aa22.43■■□□□ 1.18
SHOX-201ENST00000334060 PPM1GO15355 546 aaPredicted RBP22.42■■□□□ 1.18
SHOX-201ENST00000334060 MAP3K19Q56UN5 1328 aa22.41■■□□□ 1.18
SHOX-201ENST00000334060 ARHGEF10O15013 1369 aa22.41■■□□□ 1.18
SHOX-201ENST00000334060 MTHFSP49914 203 aa22.41■■□□□ 1.18
SHOX-201ENST00000334060 MAP2P11137 1827 aaKnown RBP22.41■■□□□ 1.18
SHOX-201ENST00000334060 CHRNA2Q15822 529 aa22.4■■□□□ 1.18
SHOX-201ENST00000334060 NUTM2BA6NNL0 878 aaPredicted RBP22.39■■□□□ 1.18
SHOX-201ENST00000334060 NUTM2EB1AL46 878 aaPredicted RBP22.39■■□□□ 1.18
SHOX-201ENST00000334060 RALBP1Q15311 655 aa22.39■■□□□ 1.18
SHOX-201ENST00000334060 NUTM2AQ8IVF1 878 aaPredicted RBP22.39■■□□□ 1.18
SHOX-201ENST00000334060 MYBBP1AQ9BQG0 1328 aaKnown RBP22.39■■□□□ 1.18
SHOX-201ENST00000334060 COL22A1Q8NFW1 1626 aaPredicted RBP22.37■■□□□ 1.17
SHOX-201ENST00000334060 LTN1O94822 1766 aa22.37■■□□□ 1.17
SHOX-201ENST00000334060 KIAA0232Q92628 1395 aa22.36■■□□□ 1.17
SHOX-201ENST00000334060 LRP6O75581 1613 aa22.36■■□□□ 1.17
SHOX-201ENST00000334060 AXIN2Q9Y2T1 843 aa22.36■■□□□ 1.17
SHOX-201ENST00000334060 HSP90AB2PQ58FF8 381 aa22.36■■□□□ 1.17
SHOX-201ENST00000334060 ADAMTS2O95450 1211 aa22.35■■□□□ 1.17
SHOX-201ENST00000334060 AATKQ6ZMQ8 1374 aa22.34■■□□□ 1.17
SHOX-201ENST00000334060 ARHGEF25Q86VW2 580 aa22.34■■□□□ 1.17
SHOX-201ENST00000334060 FBXO41Q8TF61 875 aa22.34■■□□□ 1.17
SHOX-201ENST00000334060 SHPRHQ149N8 1683 aa22.33■■□□□ 1.17
SHOX-201ENST00000334060 SENP3-EIF4A1A0A087X0R7 540 aa22.32■■□□□ 1.16
SHOX-201ENST00000334060 COL3A1P02461 1466 aaPredicted RBP22.32■■□□□ 1.16
SHOX-201ENST00000334060 HAP1P54257 671 aaPredicted RBP22.32■■□□□ 1.16
SHOX-201ENST00000334060 JCADQ9P266 1359 aa22.32■■□□□ 1.16
SHOX-201ENST00000334060 RGPD5Q99666 1765 aa22.31■■□□□ 1.16
SHOX-201ENST00000334060 SMG6Q86US8 1419 aaKnown RBP22.31■■□□□ 1.16
SHOX-201ENST00000334060 FAM83GA6ND36 823 aa22.3■■□□□ 1.16
SHOX-201ENST00000334060 HOXC9P31274 260 aa22.3■■□□□ 1.16
SHOX-201ENST00000334060 LTV1Q96GA3 475 aaPredicted RBP22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 101.7 ms