RNA–Protein interactions for RNA: ENST00000324340.13

DDX39A-202, Transcript of DExD-box helicase 39A, humanhuman

TSL 1 (best)

Gene DDX39A, Length 1,355 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-202ENST00000324340 TSHZ2Q9NRE2 1034 aa17.23■□□□□ 0.35
DDX39A-202ENST00000324340 FYB1O15117 783 aa17.22■□□□□ 0.35
DDX39A-202ENST00000324340 PPP2R1AP30153 589 aa17.22■□□□□ 0.35
DDX39A-202ENST00000324340 FBXO41Q8TF61 875 aa17.22■□□□□ 0.35
DDX39A-202ENST00000324340 MST1RQ04912 1400 aa17.2■□□□□ 0.34
DDX39A-202ENST00000324340 KIF1AQ12756 1690 aa17.19■□□□□ 0.34
DDX39A-202ENST00000324340 C1orf167Q5SNV9 1468 aa17.19■□□□□ 0.34
DDX39A-202ENST00000324340 MORC1Q86VD1 984 aa17.19■□□□□ 0.34
DDX39A-202ENST00000324340 MSH6P52701 1360 aa17.19■□□□□ 0.34
DDX39A-202ENST00000324340 PMFBP1Q8TBY8 1022 aa17.18■□□□□ 0.34
DDX39A-202ENST00000324340 PHF8Q9UPP1 1060 aa17.18■□□□□ 0.34
DDX39A-202ENST00000324340 TTC21BQ7Z4L5 1316 aa17.18■□□□□ 0.34
DDX39A-202ENST00000324340 CADPS2Q86UW7 1296 aa17.17■□□□□ 0.34
DDX39A-202ENST00000324340 TTC21AQ8NDW8 1320 aa17.17■□□□□ 0.34
DDX39A-202ENST00000324340 ATF3P18847 181 aa17.16■□□□□ 0.34
DDX39A-202ENST00000324340 NGDNQ8NEJ9 315 aaKnown RBP17.16■□□□□ 0.34
DDX39A-202ENST00000324340 GGNBP2Q9H3C7 697 aa17.16■□□□□ 0.34
DDX39A-202ENST00000324340 USP54Q70EL1 1684 aa17.16■□□□□ 0.34
DDX39A-202ENST00000324340 LTBP4Q8N2S1 1624 aa17.16■□□□□ 0.34
DDX39A-202ENST00000324340 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.15■□□□□ 0.34
DDX39A-202ENST00000324340 PNISRQ8TF01 805 aaKnown RBP17.15■□□□□ 0.34
DDX39A-202ENST00000324340 ESCO1Q5FWF5 840 aa17.14■□□□□ 0.33
DDX39A-202ENST00000324340 NME9Q86XW9 330 aa17.14■□□□□ 0.33
DDX39A-202ENST00000324340 OVOS2A0A0J9YW53 1432 aa17.13■□□□□ 0.33
DDX39A-202ENST00000324340 OVOS2Q6IE36 1432 aa17.13■□□□□ 0.33
DDX39A-202ENST00000324340 PIK3C2AO00443 1686 aa17.13■□□□□ 0.33
DDX39A-202ENST00000324340 USP31Q70CQ4 1352 aa17.13■□□□□ 0.33
DDX39A-202ENST00000324340 ORAI2Q96SN7 254 aa17.13■□□□□ 0.33
DDX39A-202ENST00000324340 INSRP06213 1382 aa17.11■□□□□ 0.33
DDX39A-202ENST00000324340 AATKQ6ZMQ8 1374 aa17.11■□□□□ 0.33
DDX39A-202ENST00000324340 TRPM3Q9HCF6 1732 aaPredicted RBP17.11■□□□□ 0.33
DDX39A-202ENST00000324340 MARF1Q9Y4F3 1742 aaKnown RBP17.1■□□□□ 0.33
DDX39A-202ENST00000324340 COG3Q96JB2 828 aa17.1■□□□□ 0.33
DDX39A-202ENST00000324340 SMG6Q86US8 1419 aaKnown RBP17.09■□□□□ 0.33
DDX39A-202ENST00000324340 FAM9BQ8IZU0 186 aa17.09■□□□□ 0.33
DDX39A-202ENST00000324340 TNNT2P45379 298 aaPredicted RBP17.08■□□□□ 0.32
DDX39A-202ENST00000324340 MTHFSP49914 203 aa17.08■□□□□ 0.32
DDX39A-202ENST00000324340 ZRANB1Q9UGI0 708 aa17.08■□□□□ 0.32
DDX39A-202ENST00000324340 SHPRHQ149N8 1683 aa17.07■□□□□ 0.32
DDX39A-202ENST00000324340 MAP2P11137 1827 aaKnown RBP17.06■□□□□ 0.32
DDX39A-202ENST00000324340 PSME1Q06323 249 aa17.06■□□□□ 0.32
DDX39A-202ENST00000324340 PNPLA6Q8IY17 1366 aa17.06■□□□□ 0.32
DDX39A-202ENST00000324340 COL3A1P02461 1466 aaPredicted RBP17.06■□□□□ 0.32
DDX39A-202ENST00000324340 FOXO3O43524 673 aa17.05■□□□□ 0.32
DDX39A-202ENST00000324340 SLAIN2Q9P270 581 aa17.04■□□□□ 0.32
DDX39A-202ENST00000324340 ALS2Q96Q42 1657 aa17.04■□□□□ 0.32
DDX39A-202ENST00000324340 CFAP53Q96M91 514 aa17.03■□□□□ 0.32
DDX39A-202ENST00000324340 POLKQ9UBT6 870 aa17.03■□□□□ 0.32
DDX39A-202ENST00000324340 BLMP54132 1417 aaPredicted RBP17.03■□□□□ 0.32
DDX39A-202ENST00000324340 PXDNQ92626 1479 aa17.03■□□□□ 0.32
DDX39A-202ENST00000324340 CDK12Q9NYV4 1490 aaPredicted RBP17.03■□□□□ 0.32
DDX39A-202ENST00000324340 SBNO1A3KN83 1393 aa17.02■□□□□ 0.32
DDX39A-202ENST00000324340 BRINP3Q76B58 766 aa17.02■□□□□ 0.32
DDX39A-202ENST00000324340 KRT28Q7Z3Y7 464 aa17.02■□□□□ 0.32
DDX39A-202ENST00000324340 NPHP3Q7Z494 1330 aa17.02■□□□□ 0.32
DDX39A-202ENST00000324340 ABTB2Q8N961 1025 aa17.02■□□□□ 0.31
DDX39A-202ENST00000324340 CERKQ8TCT0 537 aa17.02■□□□□ 0.31
DDX39A-202ENST00000324340 PAK3O75914 559 aaPredicted RBP17.01■□□□□ 0.31
DDX39A-202ENST00000324340 NLRP6P59044 892 aa17.01■□□□□ 0.31
DDX39A-202ENST00000324340 NHSL1Q5SYE7 1610 aa17■□□□□ 0.31
DDX39A-202ENST00000324340 WDR43Q15061 677 aaKnown RBP eCLIP17■□□□□ 0.31
DDX39A-202ENST00000324340 ADAMTS8Q9UP79 889 aa17■□□□□ 0.31
DDX39A-202ENST00000324340 SLIT3O75094 1523 aa16.99■□□□□ 0.31
DDX39A-202ENST00000324340 FBLN1P23142 703 aa16.99■□□□□ 0.31
DDX39A-202ENST00000324340 HNRNPUQ00839 825 aaKnown RBP eCLIP16.98■□□□□ 0.31
DDX39A-202ENST00000324340 EMILIN1Q9Y6C2 1016 aa16.98■□□□□ 0.31
DDX39A-202ENST00000324340 NFAT5O94916 1531 aa16.98■□□□□ 0.31
DDX39A-202ENST00000324340 PEAK1Q9H792 1746 aa16.98■□□□□ 0.31
DDX39A-202ENST00000324340 KIF24Q5T7B8 1368 aa16.97■□□□□ 0.31
DDX39A-202ENST00000324340 XPCQ01831 940 aaPredicted RBP16.97■□□□□ 0.31
DDX39A-202ENST00000324340 TNS3Q68CZ2 1445 aa16.97■□□□□ 0.31
DDX39A-202ENST00000324340 PHRF1Q9P1Y6 1649 aaKnown RBP16.97■□□□□ 0.31
DDX39A-202ENST00000324340 USP19O94966 1318 aa16.96■□□□□ 0.31
DDX39A-202ENST00000324340 SOS2Q07890 1332 aaPredicted RBP16.96■□□□□ 0.31
DDX39A-202ENST00000324340 RRS1Q15050 365 aaKnown RBP16.96■□□□□ 0.31
DDX39A-202ENST00000324340 IQSEC2Q5JU85 1478 aa16.95■□□□□ 0.3
DDX39A-202ENST00000324340 MED1Q15648 1581 aaPredicted RBP16.95■□□□□ 0.3
DDX39A-202ENST00000324340 ZBED9Q6R2W3 1325 aa16.94■□□□□ 0.3
DDX39A-202ENST00000324340 CRYBG1Q9Y4K1 1723 aa16.94■□□□□ 0.3
DDX39A-202ENST00000324340 DIAPH1O60610 1272 aaKnown RBP16.94■□□□□ 0.3
DDX39A-202ENST00000324340 NUTM2GQ5VZR2 741 aa16.94■□□□□ 0.3
DDX39A-202ENST00000324340 KCNH5Q8NCM2 988 aa16.94■□□□□ 0.3
DDX39A-202ENST00000324340 DDX17Q92841 729 aaKnown RBP16.94■□□□□ 0.3
DDX39A-202ENST00000324340 MAP3K19Q56UN5 1328 aa16.94■□□□□ 0.3
DDX39A-202ENST00000324340 SPATA31A3Q5VYP0 1347 aa16.94■□□□□ 0.3
DDX39A-202ENST00000324340 ROBO1Q9Y6N7 1651 aa16.93■□□□□ 0.3
DDX39A-202ENST00000324340 NUDCQ9Y266 331 aa16.93■□□□□ 0.3
DDX39A-202ENST00000324340 LTN1O94822 1766 aa16.93■□□□□ 0.3
DDX39A-202ENST00000324340 ARHGEF10O15013 1369 aa16.93■□□□□ 0.3
DDX39A-202ENST00000324340 AHDC1Q5TGY3 1603 aaPredicted RBP16.92■□□□□ 0.3
DDX39A-202ENST00000324340 PPM1GO15355 546 aaPredicted RBP16.92■□□□□ 0.3
DDX39A-202ENST00000324340 RTL1A6NKG5 1358 aa16.92■□□□□ 0.3
DDX39A-202ENST00000324340 FLT4P35916 1363 aa16.92■□□□□ 0.3
DDX39A-202ENST00000324340 IL13P35225 146 aa16.91■□□□□ 0.3
DDX39A-202ENST00000324340 RGPD1P0DJD0 1748 aa16.9■□□□□ 0.3
DDX39A-202ENST00000324340 GCP02774 474 aa16.89■□□□□ 0.3
DDX39A-202ENST00000324340 SOX12O15370 315 aa16.88■□□□□ 0.29
DDX39A-202ENST00000324340 U2AF1L5P0DN76 240 aaPredicted RBP16.88■□□□□ 0.29
DDX39A-202ENST00000324340 U2AF1Q01081 240 aaKnown RBP eCLIP16.88■□□□□ 0.292e-6■□□□□ 10.7
DDX39A-202ENST00000324340 LMOD2Q6P5Q4 547 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms