RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 NALCNQ8IZF0 1738 aa24.52■■□□□ 1.52
USP39-201ENST00000323701 NUDCQ9Y266 331 aa24.52■■□□□ 1.52
USP39-201ENST00000323701 ZNF692Q9BU19 519 aaPredicted RBP24.51■■□□□ 1.51
USP39-201ENST00000323701 NRKQ7Z2Y5 1582 aa24.49■■□□□ 1.51
USP39-201ENST00000323701 COL3A1P02461 1466 aaPredicted RBP24.49■■□□□ 1.51
USP39-201ENST00000323701 USP6P35125 1406 aa24.48■■□□□ 1.51
USP39-201ENST00000323701 TTC21BQ7Z4L5 1316 aa24.48■■□□□ 1.51
USP39-201ENST00000323701 APAF1O14727 1248 aa24.48■■□□□ 1.51
USP39-201ENST00000323701 FMN2Q9NZ56 1722 aa24.48■■□□□ 1.51
USP39-201ENST00000323701 CFAP53Q96M91 514 aa24.47■■□□□ 1.51
USP39-201ENST00000323701 POLKQ9UBT6 870 aa24.47■■□□□ 1.51
USP39-201ENST00000323701 IRX6P78412 446 aaPredicted RBP24.46■■□□□ 1.51
USP39-201ENST00000323701 SSH2Q76I76 1423 aa24.46■■□□□ 1.51
USP39-201ENST00000323701 EMILIN1Q9Y6C2 1016 aa24.44■■□□□ 1.5
USP39-201ENST00000323701 ZNF521Q96K83 1311 aa24.44■■□□□ 1.5
USP39-201ENST00000323701 PNPLA6Q8IY17 1366 aa24.43■■□□□ 1.5
USP39-201ENST00000323701 ANKARQ7Z5J8 1434 aa24.43■■□□□ 1.5
USP39-201ENST00000323701 MAP2P11137 1827 aaKnown RBP24.43■■□□□ 1.5
USP39-201ENST00000323701 COG3Q96JB2 828 aa24.43■■□□□ 1.5
USP39-201ENST00000323701 ADGRL3Q9HAR2 1447 aa24.43■■□□□ 1.5
USP39-201ENST00000323701 NWD1Q149M9 1564 aa24.43■■□□□ 1.5
USP39-201ENST00000323701 PPM1GO15355 546 aaPredicted RBP24.42■■□□□ 1.5
USP39-201ENST00000323701 NGDNQ8NEJ9 315 aaKnown RBP24.42■■□□□ 1.5
USP39-201ENST00000323701 U2AF1L5P0DN76 240 aaPredicted RBP24.4■■□□□ 1.5
USP39-201ENST00000323701 U2AF1Q01081 240 aaKnown RBP eCLIP24.4■■□□□ 1.5
USP39-201ENST00000323701 PDE3BQ13370 1112 aa24.4■■□□□ 1.5
USP39-201ENST00000323701 RRS1Q15050 365 aaKnown RBP24.4■■□□□ 1.5
USP39-201ENST00000323701 NEFLP07196 543 aa24.4■■□□□ 1.5
USP39-201ENST00000323701 LMTK3Q96Q04 1460 aa24.39■■□□□ 1.49
USP39-201ENST00000323701 OVOS2A0A0J9YW53 1432 aa24.38■■□□□ 1.49
USP39-201ENST00000323701 OVOS2Q6IE36 1432 aa24.38■■□□□ 1.49
USP39-201ENST00000323701 U2SURPO15042 1029 aaKnown RBP24.37■■□□□ 1.49
USP39-201ENST00000323701 DMRT2Q9Y5R5 561 aa24.37■■□□□ 1.49
USP39-201ENST00000323701 C14orf37Q86TY3 774 aa24.37■■□□□ 1.49
USP39-201ENST00000323701 RRP7AQ9Y3A4 280 aaKnown RBP24.37■■□□□ 1.49
USP39-201ENST00000323701 STRCP1A6NGW2 1772 aa24.37■■□□□ 1.49
USP39-201ENST00000323701 AATKQ6ZMQ8 1374 aa24.36■■□□□ 1.49
USP39-201ENST00000323701 PROSER2Q86WR7 435 aaPredicted RBP24.36■■□□□ 1.49
USP39-201ENST00000323701 RUNDC1Q96C34 613 aa24.36■■□□□ 1.49
USP39-201ENST00000323701 DIAPH1O60610 1272 aaKnown RBP24.36■■□□□ 1.49
USP39-201ENST00000323701 SPINK5Q9NQ38 1064 aaPredicted RBP24.36■■□□□ 1.49
USP39-201ENST00000323701 IQSEC2Q5JU85 1478 aa24.35■■□□□ 1.49
USP39-201ENST00000323701 TCP11L2Q8N4U5 519 aa24.35■■□□□ 1.49
USP39-201ENST00000323701 NEUROD2Q15784 382 aa24.33■■□□□ 1.49
USP39-201ENST00000323701 PHF8Q9UPP1 1060 aa24.33■■□□□ 1.48
USP39-201ENST00000323701 PLEKHF1Q96S99 279 aa24.32■■□□□ 1.48
USP39-201ENST00000323701 PIK3C2AO00443 1686 aa24.32■■□□□ 1.48
USP39-201ENST00000323701 SOX12O15370 315 aa24.32■■□□□ 1.48
USP39-201ENST00000323701 TTC21AQ8NDW8 1320 aa24.31■■□□□ 1.48
USP39-201ENST00000323701 RNF123Q5XPI4 1314 aa24.31■■□□□ 1.48
USP39-201ENST00000323701 GOLGA2Q08379 1002 aa24.3■■□□□ 1.48
USP39-201ENST00000323701 ESCO1Q5FWF5 840 aa24.3■■□□□ 1.48
USP39-201ENST00000323701 DUSP27Q5VZP5 1158 aa24.3■■□□□ 1.48
USP39-201ENST00000323701 ORAI2Q96SN7 254 aa24.3■■□□□ 1.48
USP39-201ENST00000323701 STRCQ7RTU9 1775 aa24.3■■□□□ 1.48
USP39-201ENST00000323701 NUTM2GQ5VZR2 741 aa24.3■■□□□ 1.48
USP39-201ENST00000323701 CDK12Q9NYV4 1490 aaPredicted RBP24.3■■□□□ 1.48
USP39-201ENST00000323701 WWC1Q8IX03 1113 aa24.29■■□□□ 1.48
USP39-201ENST00000323701 USP31Q70CQ4 1352 aa24.29■■□□□ 1.48
USP39-201ENST00000323701 IL13P35225 146 aa24.28■■□□□ 1.48
USP39-201ENST00000323701 SLFN5Q08AF3 891 aa24.27■■□□□ 1.48
USP39-201ENST00000323701 TMEM94Q12767 1356 aa24.27■■□□□ 1.48
USP39-201ENST00000323701 PHF23Q9BUL5 403 aaPredicted RBP24.26■■□□□ 1.47
USP39-201ENST00000323701 RCAN3Q9UKA8 241 aa24.26■■□□□ 1.47
USP39-201ENST00000323701 PEAK1Q9H792 1746 aa24.26■■□□□ 1.47
USP39-201ENST00000323701 TRMT2AQ8IZ69 625 aaKnown RBP24.26■■□□□ 1.47
USP39-201ENST00000323701 PAK3O75914 559 aaPredicted RBP24.25■■□□□ 1.47
USP39-201ENST00000323701 MARF1Q9Y4F3 1742 aaKnown RBP24.25■■□□□ 1.47
USP39-201ENST00000323701 NLRP6P59044 892 aa24.25■■□□□ 1.47
USP39-201ENST00000323701 C19orf44Q9H6X5 657 aa24.25■■□□□ 1.47
USP39-201ENST00000323701 HMOX1P09601 288 aa24.23■■□□□ 1.47
USP39-201ENST00000323701 LRRC7Q96NW7 1537 aa24.23■■□□□ 1.47
USP39-201ENST00000323701 RSPH6AQ9H0K4 717 aa24.23■■□□□ 1.47
USP39-201ENST00000323701 XPCQ01831 940 aaPredicted RBP24.22■■□□□ 1.47
USP39-201ENST00000323701 NGEFQ8N5V2 710 aa24.22■■□□□ 1.47
USP39-201ENST00000323701 ABTB2Q8N961 1025 aa24.22■■□□□ 1.47
USP39-201ENST00000323701 FOXO3O43524 673 aa24.22■■□□□ 1.47
USP39-201ENST00000323701 MAP3K19Q56UN5 1328 aa24.22■■□□□ 1.47
USP39-201ENST00000323701 HSP90AB2PQ58FF8 381 aa24.22■■□□□ 1.47
USP39-201ENST00000323701 C1orf167Q5SNV9 1468 aa24.2■■□□□ 1.46
USP39-201ENST00000323701 PRKAR2BP31323 418 aa24.2■■□□□ 1.46
USP39-201ENST00000323701 TMPOP42166 694 aaKnown RBP24.2■■□□□ 1.46
USP39-201ENST00000323701 FCHSD2O94868 740 aa24.19■■□□□ 1.46
USP39-201ENST00000323701 PSME1Q06323 249 aa24.19■■□□□ 1.46
USP39-201ENST00000323701 EIF4A2Q14240 407 aaKnown RBP24.19■■□□□ 1.46
USP39-201ENST00000323701 PHACTR3Q96KR7 559 aa24.19■■□□□ 1.46
USP39-201ENST00000323701 CCDC27Q2M243 656 aa24.18■■□□□ 1.46
USP39-201ENST00000323701 TRIM35Q9UPQ4 493 aa24.18■■□□□ 1.46
USP39-201ENST00000323701 E9PSI1 815 aa24.17■■□□□ 1.46
USP39-201ENST00000323701 RRP1P56182 461 aaKnown RBP24.17■■□□□ 1.46
USP39-201ENST00000323701 MAPK8IP3Q9UPT6 1336 aa24.17■■□□□ 1.46
USP39-201ENST00000323701 ZNF335Q9H4Z2 1342 aaPredicted RBP24.15■■□□□ 1.46
USP39-201ENST00000323701 MST1RQ04912 1400 aa24.15■■□□□ 1.46
USP39-201ENST00000323701 AEBP1Q8IUX7 1158 aa24.15■■□□□ 1.46
USP39-201ENST00000323701 USP54Q70EL1 1684 aa24.14■■□□□ 1.46
USP39-201ENST00000323701 PLIN1O60240 522 aa24.14■■□□□ 1.45
USP39-201ENST00000323701 XIRP1Q702N8 1843 aaKnown RBP24.14■■□□□ 1.45
USP39-201ENST00000323701 ATF3P18847 181 aa24.13■■□□□ 1.45
USP39-201ENST00000323701 DDX17Q92841 729 aaKnown RBP24.13■■□□□ 1.45
USP39-201ENST00000323701 RIPK4P57078 832 aa24.12■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms