RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 AMER1Q5JTC6 1135 aaPredicted RBP21.03■□□□□ 0.96
PDLIM5-202ENST00000318007 CERKQ8TCT0 537 aa21.03■□□□□ 0.96
PDLIM5-202ENST00000318007 MON2Q7Z3U7 1717 aa21.02■□□□□ 0.96
PDLIM5-202ENST00000318007 CGNL1Q0VF96 1302 aa21.02■□□□□ 0.95
PDLIM5-202ENST00000318007 ZNF692Q9BU19 519 aaPredicted RBP21.01■□□□□ 0.95
PDLIM5-202ENST00000318007 SOX12O15370 315 aa21.01■□□□□ 0.95
PDLIM5-202ENST00000318007 EDC4Q6P2E9 1401 aaKnown RBP21■□□□□ 0.95
PDLIM5-202ENST00000318007 TTC21BQ7Z4L5 1316 aa20.99■□□□□ 0.95
PDLIM5-202ENST00000318007 FYB1O15117 783 aa20.99■□□□□ 0.95
PDLIM5-202ENST00000318007 KRT28Q7Z3Y7 464 aa20.99■□□□□ 0.95
PDLIM5-202ENST00000318007 ROBO1Q9Y6N7 1651 aa20.98■□□□□ 0.95
PDLIM5-202ENST00000318007 PRKRIP1Q9H875 184 aaPredicted RBP20.98■□□□□ 0.95
PDLIM5-202ENST00000318007 KIF1AQ12756 1690 aa20.98■□□□□ 0.95
PDLIM5-202ENST00000318007 NRKQ7Z2Y5 1582 aa20.98■□□□□ 0.95
PDLIM5-202ENST00000318007 TOM1O60784 492 aa20.97■□□□□ 0.95
PDLIM5-202ENST00000318007 FBLN1P23142 703 aa20.97■□□□□ 0.95
PDLIM5-202ENST00000318007 ABTB2Q8N961 1025 aa20.96■□□□□ 0.95
PDLIM5-202ENST00000318007 NPHP3Q7Z494 1330 aa20.95■□□□□ 0.94
PDLIM5-202ENST00000318007 MORC1Q86VD1 984 aa20.95■□□□□ 0.94
PDLIM5-202ENST00000318007 KIF20BQ96Q89 1820 aa20.95■□□□□ 0.94
PDLIM5-202ENST00000318007 NLRP6P59044 892 aa20.92■□□□□ 0.94
PDLIM5-202ENST00000318007 SSH2Q76I76 1423 aa20.92■□□□□ 0.94
PDLIM5-202ENST00000318007 PIK3C2AO00443 1686 aa20.91■□□□□ 0.94
PDLIM5-202ENST00000318007 COG3Q96JB2 828 aa20.91■□□□□ 0.94
PDLIM5-202ENST00000318007 PXDNQ92626 1479 aa20.9■□□□□ 0.94
PDLIM5-202ENST00000318007 PARD3Q8TEW0 1356 aa20.89■□□□□ 0.93
PDLIM5-202ENST00000318007 CCDC184Q52MB2 194 aa20.89■□□□□ 0.93
PDLIM5-202ENST00000318007 TRPM3Q9HCF6 1732 aaPredicted RBP20.88■□□□□ 0.93
PDLIM5-202ENST00000318007 TTC21AQ8NDW8 1320 aa20.88■□□□□ 0.93
PDLIM5-202ENST00000318007 PPM1GO15355 546 aaPredicted RBP20.88■□□□□ 0.93
PDLIM5-202ENST00000318007 ZBTB7CA1YPR0 619 aa20.87■□□□□ 0.93
PDLIM5-202ENST00000318007 CABLES1Q8TDN4 633 aa20.87■□□□□ 0.93
PDLIM5-202ENST00000318007 RALBP1Q15311 655 aa20.86■□□□□ 0.93
PDLIM5-202ENST00000318007 NHSL1Q5SYE7 1610 aa20.86■□□□□ 0.93
PDLIM5-202ENST00000318007 RRS1Q15050 365 aaKnown RBP20.86■□□□□ 0.93
PDLIM5-202ENST00000318007 NSD2O96028 1365 aa20.86■□□□□ 0.93
PDLIM5-202ENST00000318007 NPC1L1Q9UHC9 1359 aa20.85■□□□□ 0.93
PDLIM5-202ENST00000318007 PPP2R1AP30153 589 aa20.85■□□□□ 0.93
PDLIM5-202ENST00000318007 ANKRD26Q9UPS8 1709 aa20.84■□□□□ 0.93
PDLIM5-202ENST00000318007 SOS2Q07890 1332 aaPredicted RBP20.84■□□□□ 0.93
PDLIM5-202ENST00000318007 MYBBP1AQ9BQG0 1328 aaKnown RBP20.84■□□□□ 0.93
PDLIM5-202ENST00000318007 OVOS2A0A0J9YW53 1432 aa20.84■□□□□ 0.93
PDLIM5-202ENST00000318007 TNS3Q68CZ2 1445 aa20.84■□□□□ 0.93
PDLIM5-202ENST00000318007 OVOS2Q6IE36 1432 aa20.84■□□□□ 0.93
PDLIM5-202ENST00000318007 IQSEC2Q5JU85 1478 aa20.84■□□□□ 0.93
PDLIM5-202ENST00000318007 SPATA31A3Q5VYP0 1347 aa20.83■□□□□ 0.92
PDLIM5-202ENST00000318007 PHLPP1O60346 1717 aa20.82■□□□□ 0.92
PDLIM5-202ENST00000318007 NLRP13Q86W25 1043 aa20.81■□□□□ 0.92
PDLIM5-202ENST00000318007 MRS2Q9HD23 443 aa20.81■□□□□ 0.92
PDLIM5-202ENST00000318007 EMILIN1Q9Y6C2 1016 aa20.81■□□□□ 0.92
PDLIM5-202ENST00000318007 ALS2Q96Q42 1657 aa20.81■□□□□ 0.92
PDLIM5-202ENST00000318007 MARF1Q9Y4F3 1742 aaKnown RBP20.8■□□□□ 0.92
PDLIM5-202ENST00000318007 SBNO1A3KN83 1393 aa20.8■□□□□ 0.92
PDLIM5-202ENST00000318007 MTHFSP49914 203 aa20.79■□□□□ 0.92
PDLIM5-202ENST00000318007 HAP1P54257 671 aaPredicted RBP20.79■□□□□ 0.92
PDLIM5-202ENST00000318007 AHDC1Q5TGY3 1603 aaPredicted RBP20.78■□□□□ 0.92
PDLIM5-202ENST00000318007 ZC3H6P61129 1189 aaKnown RBP20.77■□□□□ 0.92
PDLIM5-202ENST00000318007 BRD4O60885 1362 aaPredicted RBP20.77■□□□□ 0.92
PDLIM5-202ENST00000318007 USP31Q70CQ4 1352 aa20.77■□□□□ 0.91
PDLIM5-202ENST00000318007 LRRC59Q96AG4 307 aaKnown RBP20.76■□□□□ 0.91
PDLIM5-202ENST00000318007 MED1Q15648 1581 aaPredicted RBP20.76■□□□□ 0.91
PDLIM5-202ENST00000318007 GCP02774 474 aa20.76■□□□□ 0.91
PDLIM5-202ENST00000318007 POLKQ9UBT6 870 aa20.76■□□□□ 0.91
PDLIM5-202ENST00000318007 ARHGEF10O15013 1369 aa20.75■□□□□ 0.91
PDLIM5-202ENST00000318007 COL16A1Q07092 1604 aaPredicted RBP20.75■□□□□ 0.91
PDLIM5-202ENST00000318007 MAP2P11137 1827 aaKnown RBP20.75■□□□□ 0.91
PDLIM5-202ENST00000318007 HSPA1LP34931 641 aa20.74■□□□□ 0.91
PDLIM5-202ENST00000318007 FAM9BQ8IZU0 186 aa20.74■□□□□ 0.91
PDLIM5-202ENST00000318007 MAP3K19Q56UN5 1328 aa20.73■□□□□ 0.91
PDLIM5-202ENST00000318007 SENP3-EIF4A1A0A087X0R7 540 aa20.73■□□□□ 0.91
PDLIM5-202ENST00000318007 NUTM2BA6NNL0 878 aaPredicted RBP20.72■□□□□ 0.91
PDLIM5-202ENST00000318007 NUTM2EB1AL46 878 aaPredicted RBP20.72■□□□□ 0.91
PDLIM5-202ENST00000318007 AMPHP49418 695 aa20.72■□□□□ 0.91
PDLIM5-202ENST00000318007 NUTM2AQ8IVF1 878 aaPredicted RBP20.72■□□□□ 0.91
PDLIM5-202ENST00000318007 USP19O94966 1318 aa20.71■□□□□ 0.91
PDLIM5-202ENST00000318007 PHRF1Q9P1Y6 1649 aaKnown RBP20.71■□□□□ 0.91
PDLIM5-202ENST00000318007 CCER2I3L3R5 266 aa20.7■□□□□ 0.9
PDLIM5-202ENST00000318007 CHRNA2Q15822 529 aa20.7■□□□□ 0.9
PDLIM5-202ENST00000318007 YTHDC1Q96MU7 727 aaKnown RBP20.7■□□□□ 0.9
PDLIM5-202ENST00000318007 KCNH5Q8NCM2 988 aa20.7■□□□□ 0.9
PDLIM5-202ENST00000318007 PNPLA6Q8IY17 1366 aa20.69■□□□□ 0.9
PDLIM5-202ENST00000318007 NFAT5O94916 1531 aa20.69■□□□□ 0.9
PDLIM5-202ENST00000318007 LTN1O94822 1766 aa20.69■□□□□ 0.9
PDLIM5-202ENST00000318007 HSP90AB2PQ58FF8 381 aa20.69■□□□□ 0.9
PDLIM5-202ENST00000318007 LTV1Q96GA3 475 aaPredicted RBP20.69■□□□□ 0.9
PDLIM5-202ENST00000318007 USP54Q70EL1 1684 aa20.69■□□□□ 0.9
PDLIM5-202ENST00000318007 PEAK1Q9H792 1746 aa20.68■□□□□ 0.9
PDLIM5-202ENST00000318007 SLIT3O75094 1523 aa20.68■□□□□ 0.9
PDLIM5-202ENST00000318007 AATKQ6ZMQ8 1374 aa20.68■□□□□ 0.9
PDLIM5-202ENST00000318007 ADAMTS2O95450 1211 aa20.67■□□□□ 0.9
PDLIM5-202ENST00000318007 KIAA0232Q92628 1395 aa20.67■□□□□ 0.9
PDLIM5-202ENST00000318007 CRYBG1Q9Y4K1 1723 aa20.67■□□□□ 0.9
PDLIM5-202ENST00000318007 CFAP53Q96M91 514 aa20.66■□□□□ 0.9
PDLIM5-202ENST00000318007 U2SURPO15042 1029 aaKnown RBP20.65■□□□□ 0.9
PDLIM5-202ENST00000318007 ABCA3Q99758 1704 aa20.65■□□□□ 0.9
PDLIM5-202ENST00000318007 HOXC9P31274 260 aa20.64■□□□□ 0.89
PDLIM5-202ENST00000318007 PRDM11Q9NQV5 511 aa20.64■□□□□ 0.89
PDLIM5-202ENST00000318007 ARHGEF25Q86VW2 580 aa20.63■□□□□ 0.89
PDLIM5-202ENST00000318007 AXIN2Q9Y2T1 843 aa20.63■□□□□ 0.89
PDLIM5-202ENST00000318007 FLT4P35916 1363 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms