RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 COL3A1P02461 1466 aaPredicted RBP8.4□□□□□ -1.06
ZNF540-201ENST00000316433 KCNG1Q9UIX4 513 aa8.4□□□□□ -1.06
ZNF540-201ENST00000316433 PPIP5K1Q6PFW1 1433 aa8.4□□□□□ -1.06
ZNF540-201ENST00000316433 RPGRIP1LQ68CZ1 1315 aa8.4□□□□□ -1.06
ZNF540-201ENST00000316433 EXOC6Q8TAG9 804 aa8.4□□□□□ -1.06
ZNF540-201ENST00000316433 GRPEL1Q9HAV7 217 aa8.4□□□□□ -1.06
ZNF540-201ENST00000316433 DYNC1I1O14576 645 aa8.4□□□□□ -1.07
ZNF540-201ENST00000316433 ZBTB22O15209 634 aa8.4□□□□□ -1.07
ZNF540-201ENST00000316433 TRAPPC8Q9Y2L5 1435 aa8.4□□□□□ -1.07
ZNF540-201ENST00000316433 RIMS1Q86UR5 1692 aaKnown RBP8.4□□□□□ -1.07
ZNF540-201ENST00000316433 PDE3AQ14432 1141 aa8.39□□□□□ -1.07
ZNF540-201ENST00000316433 UQCRHLA0A096LP55 91 aa8.39□□□□□ -1.07
ZNF540-201ENST00000316433 E9PSI1 815 aa8.39□□□□□ -1.07
ZNF540-201ENST00000316433 UQCRHP07919 91 aa8.39□□□□□ -1.07
ZNF540-201ENST00000316433 HSP90B1P14625 803 aaKnown RBP8.39□□□□□ -1.07
ZNF540-201ENST00000316433 SIGLEC1Q9BZZ2 1709 aa8.39□□□□□ -1.07
ZNF540-201ENST00000316433 ISY1Q9ULR0 285 aaKnown RBP8.39□□□□□ -1.07
ZNF540-201ENST00000316433 R3HCC1Q9Y3T6 440 aaKnown RBP8.38□□□□□ -1.07
ZNF540-201ENST00000316433 NRKQ7Z2Y5 1582 aa8.38□□□□□ -1.07
ZNF540-201ENST00000316433 DUSP27Q5VZP5 1158 aa8.38□□□□□ -1.07
ZNF540-201ENST00000316433 MMP14P50281 582 aa8.38□□□□□ -1.07
ZNF540-201ENST00000316433 SLC20A2Q08357 652 aa8.38□□□□□ -1.07
ZNF540-201ENST00000316433 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.38□□□□□ -1.07
ZNF540-201ENST00000316433 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.38□□□□□ -1.07
ZNF540-201ENST00000316433 MAPK8IP2Q13387 824 aaPredicted RBP8.37□□□□□ -1.07
ZNF540-201ENST00000316433 GZF1Q9H116 711 aaPredicted RBP8.37□□□□□ -1.07
ZNF540-201ENST00000316433 CGNQ9P2M7 1197 aaKnown RBP8.37□□□□□ -1.07
ZNF540-201ENST00000316433 PLEKHH1Q9ULM0 1364 aa8.37□□□□□ -1.07
ZNF540-201ENST00000316433 POGZQ7Z3K3 1410 aa8.37□□□□□ -1.07
ZNF540-201ENST00000316433 SLFN5Q08AF3 891 aa8.37□□□□□ -1.07
ZNF540-201ENST00000316433 ZSCAN30Q86W11 494 aa8.37□□□□□ -1.07
ZNF540-201ENST00000316433 WWC1Q8IX03 1113 aa8.37□□□□□ -1.07
ZNF540-201ENST00000316433 C14orf37Q86TY3 774 aa8.36□□□□□ -1.07
ZNF540-201ENST00000316433 CGNL1Q0VF96 1302 aa8.36□□□□□ -1.07
ZNF540-201ENST00000316433 AGLP35573 1532 aa8.36□□□□□ -1.07
ZNF540-201ENST00000316433 TMEM131LA2VDJ0 1609 aa8.36□□□□□ -1.07
ZNF540-201ENST00000316433 PREX1Q8TCU6 1659 aa8.36□□□□□ -1.07
ZNF540-201ENST00000316433 CLGNO14967 610 aa8.36□□□□□ -1.07
ZNF540-201ENST00000316433 FAM161AQ3B820 660 aa8.36□□□□□ -1.07
ZNF540-201ENST00000316433 EFCAB2Q5VUJ9 269 aa8.36□□□□□ -1.07
ZNF540-201ENST00000316433 HDAC5Q9UQL6 1122 aa8.36□□□□□ -1.07
ZNF540-201ENST00000316433 MAPK8IP3Q9UPT6 1336 aa8.36□□□□□ -1.07
ZNF540-201ENST00000316433 IRX5P78411 483 aaPredicted RBP8.35□□□□□ -1.07
ZNF540-201ENST00000316433 NCOA3Q9Y6Q9 1424 aa8.35□□□□□ -1.07
ZNF540-201ENST00000316433 TULP4Q9NRJ4 1543 aa8.35□□□□□ -1.07
ZNF540-201ENST00000316433 DIP2CQ9Y2E4 1556 aa8.35□□□□□ -1.07
ZNF540-201ENST00000316433 DNAJC2Q99543 621 aaKnown RBP8.35□□□□□ -1.07
ZNF540-201ENST00000316433 MSNP26038 577 aaKnown RBP8.35□□□□□ -1.07
ZNF540-201ENST00000316433 PPP2R1AP30153 589 aa8.35□□□□□ -1.07
ZNF540-201ENST00000316433 C8orf34Q49A92 452 aa8.35□□□□□ -1.07
ZNF540-201ENST00000316433 SLC52A1Q9NWF4 448 aa8.35□□□□□ -1.07
ZNF540-201ENST00000316433 MON2Q7Z3U7 1717 aa8.35□□□□□ -1.07
ZNF540-201ENST00000316433 ABCC11Q96J66 1382 aa8.34□□□□□ -1.07
ZNF540-201ENST00000316433 PLCB2Q00722 1185 aa8.34□□□□□ -1.07
ZNF540-201ENST00000316433 SKAP1Q86WV1 359 aa8.34□□□□□ -1.07
ZNF540-201ENST00000316433 CERS3Q8IU89 383 aa8.34□□□□□ -1.07
ZNF540-201ENST00000316433 SLKQ9H2G2 1235 aaPredicted RBP8.34□□□□□ -1.07
ZNF540-201ENST00000316433 DNAJC5BQ9UF47 199 aa8.34□□□□□ -1.07
ZNF540-201ENST00000316433 AKAP12Q02952 1782 aa8.34□□□□□ -1.07
ZNF540-201ENST00000316433 RIMBP3CA6NJZ7 1639 aa8.33□□□□□ -1.08
ZNF540-201ENST00000316433 RIMBP3BA6NNM3 1639 aa8.33□□□□□ -1.08
ZNF540-201ENST00000316433 RIMBP3Q9UFD9 1639 aa8.33□□□□□ -1.08
ZNF540-201ENST00000316433 BRPF1P55201 1214 aaPredicted RBP8.33□□□□□ -1.08
ZNF540-201ENST00000316433 ITSN1Q15811 1721 aa8.33□□□□□ -1.08
ZNF540-201ENST00000316433 IL16Q14005 1332 aa8.33□□□□□ -1.08
ZNF540-201ENST00000316433 NALCNQ8IZF0 1738 aa8.33□□□□□ -1.08
ZNF540-201ENST00000316433 MCM4P33991 863 aa8.33□□□□□ -1.08
ZNF540-201ENST00000316433 PSEN1P49768 467 aa8.33□□□□□ -1.08
ZNF540-201ENST00000316433 CBX1P83916 185 aa8.33□□□□□ -1.08
ZNF540-201ENST00000316433 BECN1Q14457 450 aa8.33□□□□□ -1.08
ZNF540-201ENST00000316433 AEBP1Q8IUX7 1158 aa8.32□□□□□ -1.08
ZNF540-201ENST00000316433 WDR63Q8IWG1 891 aa8.32□□□□□ -1.08
ZNF540-201ENST00000316433 ANTXR1Q9H6X2 564 aa8.32□□□□□ -1.08
ZNF540-201ENST00000316433 DIP2AQ14689 1571 aa8.32□□□□□ -1.08
ZNF540-201ENST00000316433 TRAK2O60296 914 aa8.32□□□□□ -1.08
ZNF540-201ENST00000316433 MYCNP04198 464 aaPredicted RBP8.32□□□□□ -1.08
ZNF540-201ENST00000316433 CCDC173Q0VFZ6 552 aa8.32□□□□□ -1.08
ZNF540-201ENST00000316433 PIK3R4Q99570 1358 aa8.32□□□□□ -1.08
ZNF540-201ENST00000316433 APPP05067 770 aa8.31□□□□□ -1.08
ZNF540-201ENST00000316433 FBXO3Q9UK99 471 aa8.31□□□□□ -1.08
ZNF540-201ENST00000316433 TOPAZ1Q8N9V7 1692 aa8.31□□□□□ -1.08
ZNF540-201ENST00000316433 FAM193AP78312 1265 aa8.31□□□□□ -1.08
ZNF540-201ENST00000316433 GOLGA2Q08379 1002 aa8.31□□□□□ -1.08
ZNF540-201ENST00000316433 KIF24Q5T7B8 1368 aa8.31□□□□□ -1.08
ZNF540-201ENST00000316433 TUBGCP6Q96RT7 1819 aa8.31□□□□□ -1.08
ZNF540-201ENST00000316433 HNRNPMP52272 730 aaKnown RBP eCLIP8.31□□□□□ -1.08
ZNF540-201ENST00000316433 AXDND1Q5T1B0 1012 aaPredicted RBP8.31□□□□□ -1.08
ZNF540-201ENST00000316433 ZNF622Q969S3 477 aaKnown RBP eCLIP8.31□□□□□ -1.08
ZNF540-201ENST00000316433 CDK12Q9NYV4 1490 aaPredicted RBP8.3□□□□□ -1.08
ZNF540-201ENST00000316433 SOX12O15370 315 aa8.3□□□□□ -1.08
ZNF540-201ENST00000316433 ADRA2BP18089 450 aa8.3□□□□□ -1.08
ZNF540-201ENST00000316433 PPP1R9BQ96SB3 815 aa8.3□□□□□ -1.08
ZNF540-201ENST00000316433 PNPLA6Q8IY17 1366 aa8.3□□□□□ -1.08
ZNF540-201ENST00000316433 ANKRD36BQ8N2N9 1353 aa8.3□□□□□ -1.08
ZNF540-201ENST00000316433 ATP7BP35670 1465 aa8.3□□□□□ -1.08
ZNF540-201ENST00000316433 PANK3Q9H999 370 aa8.3□□□□□ -1.08
ZNF540-201ENST00000316433 KCNJ4P48050 445 aa8.29□□□□□ -1.08
ZNF540-201ENST00000316433 SASS6Q6UVJ0 657 aa8.29□□□□□ -1.08
ZNF540-201ENST00000316433 SPATA31D1Q6ZQQ2 1576 aa8.29□□□□□ -1.08
ZNF540-201ENST00000316433 ZNF500O60304 480 aaPredicted RBP8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms