RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 TNMDQ9H2S6 317 aa16.48■□□□□ 0.23
CSPG4-201ENST00000308508 WASHC4Q2M389 1173 aa16.48■□□□□ 0.23
CSPG4-201ENST00000308508 FIBPO43427 364 aa16.48■□□□□ 0.23
CSPG4-201ENST00000308508 AEBP1Q8IUX7 1158 aa16.48■□□□□ 0.23
CSPG4-201ENST00000308508 ERICH4A6NGS2 130 aa16.47■□□□□ 0.23
CSPG4-201ENST00000308508 TAX1BP1Q86VP1 789 aa16.47■□□□□ 0.23
CSPG4-201ENST00000308508 NEK4P51957 841 aa16.47■□□□□ 0.23
CSPG4-201ENST00000308508 STK38Q15208 465 aa16.46■□□□□ 0.23
CSPG4-201ENST00000308508 WASHC2CQ9Y4E1 1318 aa16.46■□□□□ 0.23
CSPG4-201ENST00000308508 CCDC102AQ96A19 550 aa16.46■□□□□ 0.23
CSPG4-201ENST00000308508 SLC26A8Q96RN1 970 aa16.46■□□□□ 0.23
CSPG4-201ENST00000308508 WDR33Q9C0J8 1336 aaKnown RBP16.45■□□□□ 0.22
CSPG4-201ENST00000308508 NECTIN2Q92692 538 aa16.45■□□□□ 0.22
CSPG4-201ENST00000308508 DHX57Q6P158 1386 aaKnown RBP16.45■□□□□ 0.22
CSPG4-201ENST00000308508 ESPNB1AK53 854 aa16.45■□□□□ 0.22
CSPG4-201ENST00000308508 ABCC8Q09428 1581 aa16.45■□□□□ 0.22
CSPG4-201ENST00000308508 ANKRD1Q15327 319 aa16.45■□□□□ 0.22
CSPG4-201ENST00000308508 UBTFL1P0CB47 393 aaPredicted RBP16.44■□□□□ 0.22
CSPG4-201ENST00000308508 FAM193AP78312 1265 aa16.44■□□□□ 0.22
CSPG4-201ENST00000308508 SHTN1A0MZ66 631 aa16.44■□□□□ 0.22
CSPG4-201ENST00000308508 RBM33Q96EV2 1170 aaKnown RBP16.44■□□□□ 0.22
CSPG4-201ENST00000308508 GBP3Q9H0R5 595 aa16.44■□□□□ 0.22
CSPG4-201ENST00000308508 DDX11Q96FC9 970 aa16.44■□□□□ 0.22
CSPG4-201ENST00000308508 FSD1Q9BTV5 496 aa16.44■□□□□ 0.22
CSPG4-201ENST00000308508 KIF2AO00139 706 aaPredicted RBP16.43■□□□□ 0.22
CSPG4-201ENST00000308508 PANK1Q8TE04 598 aa16.43■□□□□ 0.22
CSPG4-201ENST00000308508 NEUROD6Q96NK8 337 aa16.43■□□□□ 0.22
CSPG4-201ENST00000308508 WWC2Q6AWC2 1192 aa16.43■□□□□ 0.22
CSPG4-201ENST00000308508 NUTM2DQ5VT03 806 aaPredicted RBP16.42■□□□□ 0.22
CSPG4-201ENST00000308508 KRT85P78386 507 aa16.42■□□□□ 0.22
CSPG4-201ENST00000308508 TSPYL4Q9UJ04 414 aa16.42■□□□□ 0.22
CSPG4-201ENST00000308508 FAM107BQ9H098 131 aa16.42■□□□□ 0.22
CSPG4-201ENST00000308508 CALCOCO1Q9P1Z2 691 aa16.42■□□□□ 0.22
CSPG4-201ENST00000308508 LRRFIP2Q9Y608 721 aaKnown RBP16.42■□□□□ 0.22
CSPG4-201ENST00000308508 EVA1CP58658 441 aa16.42■□□□□ 0.22
CSPG4-201ENST00000308508 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.42■□□□□ 0.22
CSPG4-201ENST00000308508 KRT18P05783 430 aaKnown RBP16.42■□□□□ 0.22
CSPG4-201ENST00000308508 FAM177A1Q8N128 213 aaPredicted RBP16.42■□□□□ 0.22
CSPG4-201ENST00000308508 SLC3A2P08195 630 aaKnown RBP16.42■□□□□ 0.22
CSPG4-201ENST00000308508 UBXN4Q92575 508 aa16.41■□□□□ 0.22
CSPG4-201ENST00000308508 MAP9Q49MG5 647 aa16.41■□□□□ 0.22
CSPG4-201ENST00000308508 TMCO3Q6UWJ1 677 aa16.41■□□□□ 0.22
CSPG4-201ENST00000308508 CRACR2AQ9BSW2 395 aa16.41■□□□□ 0.22
CSPG4-201ENST00000308508 TBC1D2BQ9UPU7 963 aa16.41■□□□□ 0.22
CSPG4-201ENST00000308508 MCM3P25205 808 aa16.4■□□□□ 0.22
CSPG4-201ENST00000308508 CCDC91Q7Z6B0 441 aa16.4■□□□□ 0.22
CSPG4-201ENST00000308508 NUTM2FA1L443 756 aa16.4■□□□□ 0.22
CSPG4-201ENST00000308508 ME1P48163 572 aa16.4■□□□□ 0.22
CSPG4-201ENST00000308508 PAF1Q8N7H5 531 aa16.4■□□□□ 0.22
CSPG4-201ENST00000308508 CCDC148Q8NFR7 591 aa16.4■□□□□ 0.22
CSPG4-201ENST00000308508 K7ELQ4 463 aaPredicted RBP16.4■□□□□ 0.22
CSPG4-201ENST00000308508 VGFO15240 615 aaPredicted RBP16.4■□□□□ 0.22
CSPG4-201ENST00000308508 HNRNPMP52272 730 aaKnown RBP eCLIP16.4■□□□□ 0.22
CSPG4-201ENST00000308508 CEBPZQ03701 1054 aaKnown RBP16.4■□□□□ 0.22
CSPG4-201ENST00000308508 CNTLNQ9NXG0 1405 aa16.39■□□□□ 0.21
CSPG4-201ENST00000308508 RIC3Q7Z5B4 369 aa16.39■□□□□ 0.21
CSPG4-201ENST00000308508 PDIA4P13667 645 aaKnown RBP16.39■□□□□ 0.21
CSPG4-201ENST00000308508 GCC1Q96CN9 775 aa16.39■□□□□ 0.21
CSPG4-201ENST00000308508 ZSCAN30Q86W11 494 aa16.38■□□□□ 0.21
CSPG4-201ENST00000308508 GNAI3P08754 354 aa16.38■□□□□ 0.21
CSPG4-201ENST00000308508 MAP2K1Q02750 393 aaPredicted RBP16.38■□□□□ 0.21
CSPG4-201ENST00000308508 TMEM132AQ24JP5 1023 aa16.38■□□□□ 0.21
CSPG4-201ENST00000308508 CFAP45Q9UL16 551 aa16.38■□□□□ 0.21
CSPG4-201ENST00000308508 CYP46A1Q9Y6A2 500 aa16.38■□□□□ 0.21
CSPG4-201ENST00000308508 FYB1O15117 783 aa16.38■□□□□ 0.21
CSPG4-201ENST00000308508 BRD4O60885 1362 aaPredicted RBP16.38■□□□□ 0.21
CSPG4-201ENST00000308508 SMTNL1A8MU46 457 aa16.38■□□□□ 0.21
CSPG4-201ENST00000308508 ERC1Q8IUD2 1116 aa16.38■□□□□ 0.21
CSPG4-201ENST00000308508 CEP57L1Q8IYX8 460 aa16.38■□□□□ 0.21
CSPG4-201ENST00000308508 CIZ1Q9ULV3 898 aaPredicted RBP16.37■□□□□ 0.21
CSPG4-201ENST00000308508 GOLGA6L10A0A0M3HER8 536 aa16.37■□□□□ 0.21
CSPG4-201ENST00000308508 PDCL3Q9H2J4 239 aa16.37■□□□□ 0.21
CSPG4-201ENST00000308508 JAKMIP3Q5VZ66 844 aa16.37■□□□□ 0.21
CSPG4-201ENST00000308508 ATP2B1P20020 1258 aa16.37■□□□□ 0.21
CSPG4-201ENST00000308508 DHX37Q8IY37 1157 aaKnown RBP16.37■□□□□ 0.21
CSPG4-201ENST00000308508 PRKCSHP14314 528 aaPredicted RBP16.37■□□□□ 0.21
CSPG4-201ENST00000308508 TRHP20396 242 aaPredicted RBP16.37■□□□□ 0.21
CSPG4-201ENST00000308508 MICALCLQ6ZW33 695 aa16.37■□□□□ 0.21
CSPG4-201ENST00000308508 EPB41L2O43491 1005 aaKnown RBP16.36■□□□□ 0.21
CSPG4-201ENST00000308508 IKQ13123 557 aaPredicted RBP16.36■□□□□ 0.21
CSPG4-201ENST00000308508 KIAA1328Q86T90 577 aa16.36■□□□□ 0.21
CSPG4-201ENST00000308508 TANGO6Q9C0B7 1094 aa16.36■□□□□ 0.21
CSPG4-201ENST00000308508 TRIM22Q8IYM9 498 aa16.36■□□□□ 0.21
CSPG4-201ENST00000308508 MIA2Q96PC5 1412 aa16.36■□□□□ 0.21
CSPG4-201ENST00000308508 MAPK8IP2Q13387 824 aaPredicted RBP16.36■□□□□ 0.21
CSPG4-201ENST00000308508 ARHGAP29Q52LW3 1261 aa16.35■□□□□ 0.21
CSPG4-201ENST00000308508 NF2P35240 595 aa16.35■□□□□ 0.21
CSPG4-201ENST00000308508 CGNQ9P2M7 1197 aaKnown RBP16.35■□□□□ 0.21
CSPG4-201ENST00000308508 NUP62CLQ9H1M0 184 aa16.34■□□□□ 0.21
CSPG4-201ENST00000308508 SAMD1Q6SPF0 538 aaPredicted RBP16.34■□□□□ 0.21
CSPG4-201ENST00000308508 UPF3BQ9BZI7 483 aaKnown RBP16.34■□□□□ 0.21
CSPG4-201ENST00000308508 TAF4BQ92750 862 aa16.34■□□□□ 0.21
CSPG4-201ENST00000308508 DESP17661 470 aa16.34■□□□□ 0.21
CSPG4-201ENST00000308508 ZNF397Q8NF99 534 aaPredicted RBP16.34■□□□□ 0.21
CSPG4-201ENST00000308508 SPATA32Q96LK8 384 aa16.33■□□□□ 0.21
CSPG4-201ENST00000308508 KIF18AQ8NI77 898 aa16.33■□□□□ 0.2
CSPG4-201ENST00000308508 CCDC7Q96M83 1385 aa16.33■□□□□ 0.2
CSPG4-201ENST00000308508 PTPN14Q15678 1187 aa16.33■□□□□ 0.2
CSPG4-201ENST00000308508 ZSCAN12O43309 604 aa16.33■□□□□ 0.2
CSPG4-201ENST00000308508 KDM4AO75164 1064 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 143.6 ms