RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 ALKQ9UM73 1620 aa18.57■□□□□ 0.56
PTPN9-201ENST00000306726 PLEKHH1Q9ULM0 1364 aa18.57■□□□□ 0.56
PTPN9-201ENST00000306726 SOX12O15370 315 aa18.56■□□□□ 0.56
PTPN9-201ENST00000306726 FOXD4L5Q5VV16 416 aaPredicted RBP18.55■□□□□ 0.56
PTPN9-201ENST00000306726 FOXD4L4Q8WXT5 416 aaPredicted RBP18.55■□□□□ 0.56
PTPN9-201ENST00000306726 SLC12A5Q9H2X9 1139 aa18.55■□□□□ 0.56
PTPN9-201ENST00000306726 IQGAP1P46940 1657 aa18.55■□□□□ 0.56
PTPN9-201ENST00000306726 DLC1Q96QB1 1528 aa18.54■□□□□ 0.56
PTPN9-201ENST00000306726 TBX22Q9Y458 520 aa18.54■□□□□ 0.56
PTPN9-201ENST00000306726 SMC4Q9NTJ3 1288 aa18.53■□□□□ 0.56
PTPN9-201ENST00000306726 ADGRB1O14514 1584 aa18.53■□□□□ 0.56
PTPN9-201ENST00000306726 NRXN3Q9Y4C0 1643 aa18.52■□□□□ 0.55
PTPN9-201ENST00000306726 PDZRN3Q9UPQ7 1066 aa18.52■□□□□ 0.55
PTPN9-201ENST00000306726 NPHP4O75161 1426 aaPredicted RBP18.51■□□□□ 0.55
PTPN9-201ENST00000306726 SIRT1Q96EB6 747 aa18.51■□□□□ 0.55
PTPN9-201ENST00000306726 KNDC1Q76NI1 1749 aa18.51■□□□□ 0.55
PTPN9-201ENST00000306726 PANK2Q9BZ23 570 aa18.51■□□□□ 0.55
PTPN9-201ENST00000306726 LRPPRCP42704 1394 aaKnown RBP18.51■□□□□ 0.55
PTPN9-201ENST00000306726 LMTK3Q96Q04 1460 aa18.51■□□□□ 0.55
PTPN9-201ENST00000306726 SETD1AO15047 1707 aaKnown RBP18.5■□□□□ 0.55
PTPN9-201ENST00000306726 TCP11L2Q8N4U5 519 aa18.5■□□□□ 0.55
PTPN9-201ENST00000306726 TESK2Q96S53 571 aa18.5■□□□□ 0.55
PTPN9-201ENST00000306726 SLFN5Q08AF3 891 aa18.5■□□□□ 0.55
PTPN9-201ENST00000306726 FOXD4L6Q3SYB3 417 aaPredicted RBP18.5■□□□□ 0.55
PTPN9-201ENST00000306726 FOXD4L3Q6VB84 417 aaPredicted RBP18.5■□□□□ 0.55
PTPN9-201ENST00000306726 LNPKQ9C0E8 428 aa18.5■□□□□ 0.55
PTPN9-201ENST00000306726 HSP90AB1P08238 724 aaKnown RBP18.49■□□□□ 0.55
PTPN9-201ENST00000306726 SBNO2Q9Y2G9 1366 aa18.49■□□□□ 0.55
PTPN9-201ENST00000306726 C1orf115Q9H7X2 142 aa18.49■□□□□ 0.55
PTPN9-201ENST00000306726 CDCA8Q53HL2 280 aa18.49■□□□□ 0.55
PTPN9-201ENST00000306726 ADAMTS13Q76LX8 1427 aa18.49■□□□□ 0.55
PTPN9-201ENST00000306726 LTKP29376 864 aa18.49■□□□□ 0.55
PTPN9-201ENST00000306726 TECPR2O15040 1411 aa18.48■□□□□ 0.55
PTPN9-201ENST00000306726 FBLN1P23142 703 aa18.48■□□□□ 0.55
PTPN9-201ENST00000306726 TRIM44Q96DX7 344 aaPredicted RBP18.48■□□□□ 0.55
PTPN9-201ENST00000306726 ABCC11Q96J66 1382 aa18.48■□□□□ 0.55
PTPN9-201ENST00000306726 YTHDC2Q9H6S0 1430 aaKnown RBP18.48■□□□□ 0.55
PTPN9-201ENST00000306726 MTHFSP49914 203 aa18.47■□□□□ 0.55
PTPN9-201ENST00000306726 SRPK2P78362 688 aaKnown RBP18.47■□□□□ 0.55
PTPN9-201ENST00000306726 GOLGA6L3A6NEY3 463 aa18.47■□□□□ 0.55
PTPN9-201ENST00000306726 RLBP1P12271 317 aa18.47■□□□□ 0.55
PTPN9-201ENST00000306726 E9PSI1 815 aa18.47■□□□□ 0.55
PTPN9-201ENST00000306726 FAM135BQ49AJ0 1406 aa18.46■□□□□ 0.55
PTPN9-201ENST00000306726 PNNQ9H307 717 aaKnown RBP18.46■□□□□ 0.55
PTPN9-201ENST00000306726 PCDHB15Q9Y5E8 787 aa18.46■□□□□ 0.55
PTPN9-201ENST00000306726 NOL8Q76FK4 1167 aaKnown RBP18.46■□□□□ 0.54
PTPN9-201ENST00000306726 CPS1P31327 1500 aa18.45■□□□□ 0.54
PTPN9-201ENST00000306726 ASXL1Q8IXJ9 1541 aa18.45■□□□□ 0.54
PTPN9-201ENST00000306726 GGNBP2Q9H3C7 697 aa18.44■□□□□ 0.54
PTPN9-201ENST00000306726 HSCBQ8IWL3 235 aa18.43■□□□□ 0.54
PTPN9-201ENST00000306726 PTCH1Q13635 1447 aa18.43■□□□□ 0.54
PTPN9-201ENST00000306726 CFAP53Q96M91 514 aa18.43■□□□□ 0.54
PTPN9-201ENST00000306726 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.43■□□□□ 0.54
PTPN9-201ENST00000306726 VSIG10Q8N0Z9 540 aa18.42■□□□□ 0.54
PTPN9-201ENST00000306726 RWDD1Q9H446 243 aaPredicted RBP18.42■□□□□ 0.54
PTPN9-201ENST00000306726 WWC1Q8IX03 1113 aa18.42■□□□□ 0.54
PTPN9-201ENST00000306726 MAPK8IP3Q9UPT6 1336 aa18.42■□□□□ 0.54
PTPN9-201ENST00000306726 ARHGEF28Q8N1W1 1705 aaKnown RBP18.42■□□□□ 0.54
PTPN9-201ENST00000306726 MPNDQ8N594 471 aa18.41■□□□□ 0.54
PTPN9-201ENST00000306726 PUS7Q96PZ0 661 aaKnown RBP18.41■□□□□ 0.54
PTPN9-201ENST00000306726 CABP2Q9NPB3 220 aa18.41■□□□□ 0.54
PTPN9-201ENST00000306726 NUTM2FA1L443 756 aa18.4■□□□□ 0.54
PTPN9-201ENST00000306726 TBC1D2Q9BYX2 928 aa18.4■□□□□ 0.54
PTPN9-201ENST00000306726 PARD3Q8TEW0 1356 aa18.4■□□□□ 0.54
PTPN9-201ENST00000306726 NWD1Q149M9 1564 aa18.4■□□□□ 0.54
PTPN9-201ENST00000306726 XRN1Q8IZH2 1706 aaKnown RBP18.39■□□□□ 0.53
PTPN9-201ENST00000306726 AMER1Q5JTC6 1135 aaPredicted RBP18.39■□□□□ 0.53
PTPN9-201ENST00000306726 ANKRD45Q5TZF3 282 aa18.39■□□□□ 0.53
PTPN9-201ENST00000306726 EXOSC9Q06265 439 aaKnown RBP18.38■□□□□ 0.53
PTPN9-201ENST00000306726 THUMPD2Q9BTF0 503 aaKnown RBP18.38■□□□□ 0.53
PTPN9-201ENST00000306726 C22orf23Q9BZE7 217 aa18.38■□□□□ 0.53
PTPN9-201ENST00000306726 NKTRP30414 1462 aaKnown RBP18.38■□□□□ 0.53
PTPN9-201ENST00000306726 CGNL1Q0VF96 1302 aa18.38■□□□□ 0.53
PTPN9-201ENST00000306726 METP08581 1390 aa18.37■□□□□ 0.53
PTPN9-201ENST00000306726 QRICH2Q9H0J4 1663 aa18.37■□□□□ 0.53
PTPN9-201ENST00000306726 RRAGDQ9NQL2 400 aaPredicted RBP18.37■□□□□ 0.53
PTPN9-201ENST00000306726 HMOX1P09601 288 aa18.36■□□□□ 0.53
PTPN9-201ENST00000306726 KDM2BQ8NHM5 1336 aa18.36■□□□□ 0.53
PTPN9-201ENST00000306726 NCKAP5LQ9HCH0 1330 aa18.36■□□□□ 0.53
PTPN9-201ENST00000306726 PMFBP1Q8TBY8 1022 aa18.35■□□□□ 0.53
PTPN9-201ENST00000306726 CHD2O14647 1828 aaKnown RBP18.35■□□□□ 0.53
PTPN9-201ENST00000306726 TRAK2O60296 914 aa18.35■□□□□ 0.53
PTPN9-201ENST00000306726 NCOA3Q9Y6Q9 1424 aa18.35■□□□□ 0.53
PTPN9-201ENST00000306726 KCNA6P17658 529 aa18.34■□□□□ 0.53
PTPN9-201ENST00000306726 CARD14Q9BXL6 1004 aa18.34■□□□□ 0.53
PTPN9-201ENST00000306726 MYH16Q9H6N6 1097 aa18.34■□□□□ 0.53
PTPN9-201ENST00000306726 MINK1Q8N4C8 1332 aaPredicted RBP18.34■□□□□ 0.53
PTPN9-201ENST00000306726 L1TD1Q5T7N2 865 aaKnown RBP18.33■□□□□ 0.53
PTPN9-201ENST00000306726 DZIP1LQ8IYY4 767 aaKnown RBP18.33■□□□□ 0.53
PTPN9-201ENST00000306726 EVC2Q86UK5 1308 aa18.33■□□□□ 0.53
PTPN9-201ENST00000306726 SLC26A8Q96RN1 970 aa18.33■□□□□ 0.52
PTPN9-201ENST00000306726 ADGRB2O60241 1585 aa18.33■□□□□ 0.52
PTPN9-201ENST00000306726 NINLQ9Y2I6 1382 aa18.32■□□□□ 0.52
PTPN9-201ENST00000306726 PLCB2Q00722 1185 aa18.32■□□□□ 0.52
PTPN9-201ENST00000306726 ZKSCAN2Q63HK3 967 aa18.32■□□□□ 0.52
PTPN9-201ENST00000306726 RARSP54136 660 aaKnown RBP18.32■□□□□ 0.52
PTPN9-201ENST00000306726 ANP32BQ92688 251 aaKnown RBP18.31■□□□□ 0.52
PTPN9-201ENST00000306726 AMOTL2Q9Y2J4 779 aa18.31■□□□□ 0.52
PTPN9-201ENST00000306726 STRCQ7RTU9 1775 aa18.31■□□□□ 0.52
PTPN9-201ENST00000306726 AEBP2Q6ZN18 517 aaPredicted RBP18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms