RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 VPS37DQ86XT2 251 aa11.57□□□□□ -0.56
PTPRE-202ENST00000306042 USHBP1Q8N6Y0 703 aa11.57□□□□□ -0.56
PTPRE-202ENST00000306042 AMOTQ4VCS5 1084 aa11.56□□□□□ -0.56
PTPRE-202ENST00000306042 FCHSD2O94868 740 aa11.56□□□□□ -0.56
PTPRE-202ENST00000306042 EMILIN1Q9Y6C2 1016 aa11.56□□□□□ -0.56
PTPRE-202ENST00000306042 MAST1Q9Y2H9 1570 aa11.56□□□□□ -0.56
PTPRE-202ENST00000306042 TRIM6-TRIM34B2RNG4 842 aa11.55□□□□□ -0.56
PTPRE-202ENST00000306042 SLAIN2Q9P270 581 aa11.55□□□□□ -0.56
PTPRE-202ENST00000306042 HDGFL1Q5TGJ6 251 aa11.55□□□□□ -0.56
PTPRE-202ENST00000306042 CABLES1Q8TDN4 633 aa11.55□□□□□ -0.56
PTPRE-202ENST00000306042 FBXW7Q969H0 707 aa11.55□□□□□ -0.56
PTPRE-202ENST00000306042 TTC21BQ7Z4L5 1316 aa11.54□□□□□ -0.56
PTPRE-202ENST00000306042 ARHGEF5Q12774 1597 aa11.54□□□□□ -0.56
PTPRE-202ENST00000306042 PPIP5K1Q6PFW1 1433 aa11.54□□□□□ -0.56
PTPRE-202ENST00000306042 BTBD11A6QL63 1104 aa11.54□□□□□ -0.56
PTPRE-202ENST00000306042 LTKP29376 864 aa11.54□□□□□ -0.56
PTPRE-202ENST00000306042 KIF16BQ96L93 1317 aa11.54□□□□□ -0.56
PTPRE-202ENST00000306042 GNAT3A8MTJ3 354 aa11.54□□□□□ -0.56
PTPRE-202ENST00000306042 ANKRD24Q8TF21 1146 aa11.54□□□□□ -0.56
PTPRE-202ENST00000306042 MPRIPQ6WCQ1 1025 aa11.54□□□□□ -0.56
PTPRE-202ENST00000306042 MBD5Q9P267 1494 aa11.54□□□□□ -0.56
PTPRE-202ENST00000306042 ABCC1P33527 1531 aa11.53□□□□□ -0.56
PTPRE-202ENST00000306042 YTHDC2Q9H6S0 1430 aaKnown RBP11.53□□□□□ -0.56
PTPRE-202ENST00000306042 ZBED9Q6R2W3 1325 aa11.53□□□□□ -0.56
PTPRE-202ENST00000306042 PTCD1O75127 700 aaKnown RBP11.53□□□□□ -0.56
PTPRE-202ENST00000306042 STARD3NLO95772 234 aa11.53□□□□□ -0.56
PTPRE-202ENST00000306042 NPATQ14207 1427 aa11.53□□□□□ -0.56
PTPRE-202ENST00000306042 SAMD9LQ8IVG5 1584 aa11.53□□□□□ -0.56
PTPRE-202ENST00000306042 HECW2Q9P2P5 1572 aa11.53□□□□□ -0.56
PTPRE-202ENST00000306042 NOL10Q9BSC4 688 aaKnown RBP11.53□□□□□ -0.56
PTPRE-202ENST00000306042 CFAP65Q6ZU64 1925 aaKnown RBP11.52□□□□□ -0.56
PTPRE-202ENST00000306042 G3BP1Q13283 466 aaKnown RBP eCLIP11.51□□□□□ -0.57
PTPRE-202ENST00000306042 TWISTNBQ3B726 338 aaPredicted RBP11.51□□□□□ -0.57
PTPRE-202ENST00000306042 DZIP1LQ8IYY4 767 aaKnown RBP11.51□□□□□ -0.57
PTPRE-202ENST00000306042 PRAG1Q86YV5 1406 aa11.51□□□□□ -0.57
PTPRE-202ENST00000306042 NCLP19338 710 aaKnown RBP11.51□□□□□ -0.57
PTPRE-202ENST00000306042 DDRGK1Q96HY6 314 aa11.51□□□□□ -0.57
PTPRE-202ENST00000306042 ORAI2Q96SN7 254 aa11.51□□□□□ -0.57
PTPRE-202ENST00000306042 DDX19BQ9UMR2 479 aa11.51□□□□□ -0.57
PTPRE-202ENST00000306042 TRPM2O94759 1503 aa11.51□□□□□ -0.57
PTPRE-202ENST00000306042 MYL6BP14649 208 aa11.5□□□□□ -0.57
PTPRE-202ENST00000306042 NSD2O96028 1365 aa11.5□□□□□ -0.57
PTPRE-202ENST00000306042 COG6Q9Y2V7 657 aa11.5□□□□□ -0.57
PTPRE-202ENST00000306042 KDM5DQ9BY66 1539 aa11.5□□□□□ -0.57
PTPRE-202ENST00000306042 NFE2L2Q16236 605 aa11.5□□□□□ -0.57
PTPRE-202ENST00000306042 IFNL2Q8IZJ0 200 aa11.49□□□□□ -0.57
PTPRE-202ENST00000306042 BCL11BQ9C0K0 894 aaPredicted RBP11.49□□□□□ -0.57
PTPRE-202ENST00000306042 PREX2Q70Z35 1606 aa11.49□□□□□ -0.57
PTPRE-202ENST00000306042 UBTFL1P0CB47 393 aaPredicted RBP11.49□□□□□ -0.57
PTPRE-202ENST00000306042 ANP32BQ92688 251 aaKnown RBP11.49□□□□□ -0.57
PTPRE-202ENST00000306042 TOMM22Q9NS69 142 aa11.49□□□□□ -0.57
PTPRE-202ENST00000306042 NPHP4O75161 1426 aaPredicted RBP11.49□□□□□ -0.57
PTPRE-202ENST00000306042 ADCY10Q96PN6 1610 aa11.49□□□□□ -0.57
PTPRE-202ENST00000306042 DDB1Q16531 1140 aa11.49□□□□□ -0.57
PTPRE-202ENST00000306042 LRRFIP1Q32MZ4 808 aaKnown RBP11.49□□□□□ -0.57
PTPRE-202ENST00000306042 PLIN1O60240 522 aa11.48□□□□□ -0.57
PTPRE-202ENST00000306042 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.48□□□□□ -0.57
PTPRE-202ENST00000306042 DISP3Q9P2K9 1392 aa11.48□□□□□ -0.57
PTPRE-202ENST00000306042 PZPP20742 1482 aa11.48□□□□□ -0.57
PTPRE-202ENST00000306042 ZPR1O75312 459 aa11.48□□□□□ -0.57
PTPRE-202ENST00000306042 EXOSC9Q06265 439 aaKnown RBP11.48□□□□□ -0.57
PTPRE-202ENST00000306042 UGGT1Q9NYU2 1555 aa11.48□□□□□ -0.57
PTPRE-202ENST00000306042 GCP02774 474 aa11.48□□□□□ -0.57
PTPRE-202ENST00000306042 NBPF14Q5TI25 921 aa11.48□□□□□ -0.57
PTPRE-202ENST00000306042 BICDL1Q6ZP65 573 aa11.48□□□□□ -0.57
PTPRE-202ENST00000306042 SLC4A2P04920 1241 aa11.47□□□□□ -0.57
PTPRE-202ENST00000306042 IFIT2P09913 472 aaKnown RBP11.47□□□□□ -0.57
PTPRE-202ENST00000306042 TRIM34Q9BYJ4 488 aa11.47□□□□□ -0.57
PTPRE-202ENST00000306042 HSP90AB4PQ58FF6 505 aa11.47□□□□□ -0.57
PTPRE-202ENST00000306042 ANKRD36BQ8N2N9 1353 aa11.47□□□□□ -0.57
PTPRE-202ENST00000306042 TSR2Q969E8 191 aaKnown RBP11.47□□□□□ -0.57
PTPRE-202ENST00000306042 TMEM94Q12767 1356 aa11.46□□□□□ -0.57
PTPRE-202ENST00000306042 BTG4Q9NY30 223 aa11.46□□□□□ -0.57
PTPRE-202ENST00000306042 ZNF652Q9Y2D9 606 aa11.46□□□□□ -0.57
PTPRE-202ENST00000306042 NLRP1Q9C000 1473 aa11.46□□□□□ -0.57
PTPRE-202ENST00000306042 EFCAB6Q5THR3 1501 aa11.46□□□□□ -0.57
PTPRE-202ENST00000306042 ANKRD45Q5TZF3 282 aa11.46□□□□□ -0.57
PTPRE-202ENST00000306042 MCM10Q7L590 875 aa11.46□□□□□ -0.57
PTPRE-202ENST00000306042 AMOTL1Q8IY63 956 aa11.46□□□□□ -0.57
PTPRE-202ENST00000306042 ZCRB1Q8TBF4 217 aaKnown RBP11.46□□□□□ -0.57
PTPRE-202ENST00000306042 C11orf95C9JLR9 678 aaPredicted RBP11.46□□□□□ -0.58
PTPRE-202ENST00000306042 PUS7Q96PZ0 661 aaKnown RBP11.46□□□□□ -0.58
PTPRE-202ENST00000306042 GOLGA6L22H0YM25 854 aa11.46□□□□□ -0.58
PTPRE-202ENST00000306042 FYB1O15117 783 aa11.46□□□□□ -0.58
PTPRE-202ENST00000306042 ERICH6BQ5W0A0 696 aa11.46□□□□□ -0.58
PTPRE-202ENST00000306042 RALGAPBQ86X10 1494 aa11.46□□□□□ -0.58
PTPRE-202ENST00000306042 TMPOP42166 694 aaKnown RBP11.45□□□□□ -0.58
PTPRE-202ENST00000306042 TULP1O00294 542 aaPredicted RBP11.45□□□□□ -0.58
PTPRE-202ENST00000306042 GNAI3P08754 354 aa11.45□□□□□ -0.58
PTPRE-202ENST00000306042 ZRSR1Q15695 479 aaKnown RBP11.45□□□□□ -0.58
PTPRE-202ENST00000306042 EIF2AK4Q9P2K8 1649 aaKnown RBP11.45□□□□□ -0.58
PTPRE-202ENST00000306042 TAF7Q15545 349 aaPredicted RBP11.45□□□□□ -0.58
PTPRE-202ENST00000306042 HSP90AB2PQ58FF8 381 aa11.45□□□□□ -0.58
PTPRE-202ENST00000306042 AK7Q96M32 723 aa11.45□□□□□ -0.58
PTPRE-202ENST00000306042 NEUROD6Q96NK8 337 aa11.45□□□□□ -0.58
PTPRE-202ENST00000306042 ARAP3Q8WWN8 1544 aa11.45□□□□□ -0.58
PTPRE-202ENST00000306042 WDR63Q8IWG1 891 aa11.44□□□□□ -0.58
PTPRE-202ENST00000306042 IL2RBP14784 551 aa11.44□□□□□ -0.58
PTPRE-202ENST00000306042 FBLN1P23142 703 aa11.44□□□□□ -0.58
PTPRE-202ENST00000306042 RILPL2Q969X0 211 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms