RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 ADAMTS8Q9UP79 889 aa9.44□□□□□ -0.9
SCN9A-201ENST00000303354 MPHOSPH8Q99549 860 aa9.44□□□□□ -0.9
SCN9A-201ENST00000303354 ABCF2Q9UG63 623 aa9.43□□□□□ -0.9
SCN9A-201ENST00000303354 RAI14Q9P0K7 980 aa9.43□□□□□ -0.9
SCN9A-201ENST00000303354 FMNL2Q96PY5 1086 aa9.43□□□□□ -0.9
SCN9A-201ENST00000303354 NOB1Q9ULX3 412 aaKnown RBP9.43□□□□□ -0.9
SCN9A-201ENST00000303354 KRT18P05783 430 aaKnown RBP9.43□□□□□ -0.9
SCN9A-201ENST00000303354 SCAPERQ9BY12 1400 aa9.43□□□□□ -0.9
SCN9A-201ENST00000303354 MPNDQ8N594 471 aa9.43□□□□□ -0.9
SCN9A-201ENST00000303354 BCAR3O75815 825 aa9.43□□□□□ -0.9
SCN9A-201ENST00000303354 GNAI1P63096 354 aa9.43□□□□□ -0.9
SCN9A-201ENST00000303354 HSP90AB2PQ58FF8 381 aa9.43□□□□□ -0.9
SCN9A-201ENST00000303354 FOXO3O43524 673 aa9.42□□□□□ -0.9
SCN9A-201ENST00000303354 CCDC30Q5VVM6 783 aa9.42□□□□□ -0.9
SCN9A-201ENST00000303354 TTC16Q8NEE8 873 aa9.42□□□□□ -0.9
SCN9A-201ENST00000303354 ZNF622Q969S3 477 aaKnown RBP eCLIP9.42□□□□□ -0.96e-9■■■□□ 19.2
SCN9A-201ENST00000303354 API5Q9BZZ5 524 aaKnown RBP9.42□□□□□ -0.9
SCN9A-201ENST00000303354 GPTP24298 496 aa9.42□□□□□ -0.9
SCN9A-201ENST00000303354 CCDC158Q5M9N0 1113 aa9.42□□□□□ -0.9
SCN9A-201ENST00000303354 PDE4AP27815 886 aa9.42□□□□□ -0.9
SCN9A-201ENST00000303354 CHRNA2Q15822 529 aa9.42□□□□□ -0.9
SCN9A-201ENST00000303354 HDGFL1Q5TGJ6 251 aa9.42□□□□□ -0.9
SCN9A-201ENST00000303354 GAPVD1Q14C86 1478 aa9.42□□□□□ -0.9
SCN9A-201ENST00000303354 CA8P35219 290 aa9.41□□□□□ -0.9
SCN9A-201ENST00000303354 SAFBQ15424 915 aaKnown RBP eCLIP9.41□□□□□ -0.93e-6■■□□□ 14.5
SCN9A-201ENST00000303354 IL1RAPL2Q9NP60 686 aa9.41□□□□□ -0.9
SCN9A-201ENST00000303354 DDX19BQ9UMR2 479 aa9.41□□□□□ -0.9
SCN9A-201ENST00000303354 SPDYE4A6NLX3 237 aa9.41□□□□□ -0.9
SCN9A-201ENST00000303354 THUMPD2Q9BTF0 503 aaKnown RBP9.41□□□□□ -0.9
SCN9A-201ENST00000303354 SPG7Q9UQ90 795 aa9.41□□□□□ -0.9
SCN9A-201ENST00000303354 TPM1P09493 284 aa9.41□□□□□ -0.9
SCN9A-201ENST00000303354 LIG1P18858 919 aa9.41□□□□□ -0.9
SCN9A-201ENST00000303354 RNF20Q5VTR2 975 aa9.41□□□□□ -0.9
SCN9A-201ENST00000303354 CDK5RAP3Q96JB5 506 aa9.41□□□□□ -0.9
SCN9A-201ENST00000303354 PRKRIP1Q9H875 184 aaPredicted RBP9.41□□□□□ -0.9
SCN9A-201ENST00000303354 FBXO31Q5XUX0 539 aaPredicted RBP9.41□□□□□ -0.9
SCN9A-201ENST00000303354 HOMER1Q86YM7 354 aa9.41□□□□□ -0.9
SCN9A-201ENST00000303354 TWISTNBQ3B726 338 aaPredicted RBP9.41□□□□□ -0.9
SCN9A-201ENST00000303354 CLEC11AQ9Y240 323 aa9.41□□□□□ -0.9
SCN9A-201ENST00000303354 PRG4Q92954 1404 aaPredicted RBP9.41□□□□□ -0.9
SCN9A-201ENST00000303354 NESP48681 1621 aa9.41□□□□□ -0.9
SCN9A-201ENST00000303354 SSBP05455 408 aaKnown RBP eCLIP9.4□□□□□ -0.9
SCN9A-201ENST00000303354 CCDC57Q2TAC2 916 aa9.4□□□□□ -0.9
SCN9A-201ENST00000303354 ANKIB1Q9P2G1 1089 aa9.4□□□□□ -0.9
SCN9A-201ENST00000303354 TIMELESSQ9UNS1 1208 aa9.4□□□□□ -0.9
SCN9A-201ENST00000303354 ERC2O15083 957 aa9.4□□□□□ -0.91
SCN9A-201ENST00000303354 ZPR1O75312 459 aa9.4□□□□□ -0.91
SCN9A-201ENST00000303354 IPO9Q96P70 1041 aaKnown RBP9.39□□□□□ -0.91
SCN9A-201ENST00000303354 TCP11L2Q8N4U5 519 aa9.39□□□□□ -0.91
SCN9A-201ENST00000303354 CENPQQ7L2Z9 268 aaPredicted RBP9.39□□□□□ -0.91
SCN9A-201ENST00000303354 DNAJC5BQ9UF47 199 aa9.39□□□□□ -0.91
SCN9A-201ENST00000303354 FBLN1P23142 703 aa9.39□□□□□ -0.91
SCN9A-201ENST00000303354 MCM10Q7L590 875 aa9.39□□□□□ -0.91
SCN9A-201ENST00000303354 CNTROBQ8N137 903 aa9.39□□□□□ -0.91
SCN9A-201ENST00000303354 ATAD2BQ9ULI0 1458 aa9.39□□□□□ -0.91
SCN9A-201ENST00000303354 FGD5Q6ZNL6 1462 aa9.39□□□□□ -0.91
SCN9A-201ENST00000303354 IDH1O75874 414 aaKnown RBP9.39□□□□□ -0.91
SCN9A-201ENST00000303354 C8orf37Q96NL8 207 aa9.39□□□□□ -0.91
SCN9A-201ENST00000303354 SASS6Q6UVJ0 657 aa9.39□□□□□ -0.91
SCN9A-201ENST00000303354 RNF214Q8ND24 703 aa9.39□□□□□ -0.91
SCN9A-201ENST00000303354 RBM26Q5T8P6 1007 aaKnown RBP9.38□□□□□ -0.91
SCN9A-201ENST00000303354 MYD88Q99836 296 aa9.38□□□□□ -0.91
SCN9A-201ENST00000303354 LRP2BPQ9P2M1 347 aa9.38□□□□□ -0.91
SCN9A-201ENST00000303354 SMG6Q86US8 1419 aaKnown RBP9.38□□□□□ -0.91
SCN9A-201ENST00000303354 NUTM1Q86Y26 1132 aa9.38□□□□□ -0.91
SCN9A-201ENST00000303354 CLASRPQ8N2M8 674 aaKnown RBP9.38□□□□□ -0.91
SCN9A-201ENST00000303354 CCDC82Q8N4S0 544 aa9.38□□□□□ -0.91
SCN9A-201ENST00000303354 GAS2L2Q8NHY3 880 aa9.38□□□□□ -0.91
SCN9A-201ENST00000303354 BRMS1Q9HCU9 246 aa9.38□□□□□ -0.91
SCN9A-201ENST00000303354 PIP4K2AP48426 406 aaPredicted RBP9.38□□□□□ -0.91
SCN9A-201ENST00000303354 ZNF76P36508 570 aa9.38□□□□□ -0.91
SCN9A-201ENST00000303354 DHX8Q14562 1220 aaKnown RBP9.38□□□□□ -0.91
SCN9A-201ENST00000303354 INTS3Q68E01 1043 aaKnown RBP9.38□□□□□ -0.91
SCN9A-201ENST00000303354 MINDY4BA8MYZ0 360 aa9.37□□□□□ -0.91
SCN9A-201ENST00000303354 UBAP1LF5GYI3 381 aa9.37□□□□□ -0.91
SCN9A-201ENST00000303354 OFD1O75665 1012 aa9.37□□□□□ -0.91
SCN9A-201ENST00000303354 F8W031 263 aaPredicted RBP9.37□□□□□ -0.91
SCN9A-201ENST00000303354 PPFIA3O75145 1194 aa9.37□□□□□ -0.91
SCN9A-201ENST00000303354 TMOD3Q9NYL9 352 aa9.37□□□□□ -0.91
SCN9A-201ENST00000303354 TNNT3P45378 269 aaPredicted RBP9.37□□□□□ -0.91
SCN9A-201ENST00000303354 SCLT1Q96NL6 688 aa9.37□□□□□ -0.91
SCN9A-201ENST00000303354 TANGO6Q9C0B7 1094 aa9.37□□□□□ -0.91
SCN9A-201ENST00000303354 TSHZ2Q9NRE2 1034 aa9.37□□□□□ -0.91
SCN9A-201ENST00000303354 HSPA2P54652 639 aa9.37□□□□□ -0.91
SCN9A-201ENST00000303354 LARP6Q9BRS8 491 aaKnown RBP9.37□□□□□ -0.91
SCN9A-201ENST00000303354 CCDC69A6NI79 296 aa9.37□□□□□ -0.91
SCN9A-201ENST00000303354 SEPT11Q9NVA2 429 aaKnown RBP9.37□□□□□ -0.91
SCN9A-201ENST00000303354 TDO2P48775 406 aa9.36□□□□□ -0.91
SCN9A-201ENST00000303354 PODXL2Q9NZ53 605 aa9.36□□□□□ -0.91
SCN9A-201ENST00000303354 PDCL3Q9H2J4 239 aa9.36□□□□□ -0.91
SCN9A-201ENST00000303354 GNL3LQ9NVN8 582 aaKnown RBP9.36□□□□□ -0.91
SCN9A-201ENST00000303354 AACSQ86V21 672 aa9.36□□□□□ -0.91
SCN9A-201ENST00000303354 PTMSP20962 102 aa9.36□□□□□ -0.91
SCN9A-201ENST00000303354 CABLES1Q8TDN4 633 aa9.35□□□□□ -0.91
SCN9A-201ENST00000303354 SMARCA5O60264 1052 aaPredicted RBP9.35□□□□□ -0.91
SCN9A-201ENST00000303354 ANKRD20A12PQ8NF67 263 aa9.35□□□□□ -0.91
SCN9A-201ENST00000303354 CRACR2BQ8N4Y2 399 aaPredicted RBP9.35□□□□□ -0.91
SCN9A-201ENST00000303354 C6orf229H3BNL8 230 aa9.35□□□□□ -0.91
SCN9A-201ENST00000303354 REC8O95072 547 aa9.35□□□□□ -0.91
SCN9A-201ENST00000303354 SLC3A2P08195 630 aaKnown RBP9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms