RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 ADGRL3Q9HAR2 1447 aa20.69■□□□□ 0.9
LSM6-201ENST00000296581 TSHZ2Q9NRE2 1034 aa20.68■□□□□ 0.9
LSM6-201ENST00000296581 SSH2Q76I76 1423 aa20.67■□□□□ 0.9
LSM6-201ENST00000296581 COL3A1P02461 1466 aaPredicted RBP20.67■□□□□ 0.9
LSM6-201ENST00000296581 SENP3-EIF4A1A0A087X0R7 540 aa20.67■□□□□ 0.9
LSM6-201ENST00000296581 NME9Q86XW9 330 aa20.67■□□□□ 0.9
LSM6-201ENST00000296581 TTC21BQ7Z4L5 1316 aa20.65■□□□□ 0.9
LSM6-201ENST00000296581 PDE3BQ13370 1112 aa20.65■□□□□ 0.9
LSM6-201ENST00000296581 NUDCQ9Y266 331 aa20.65■□□□□ 0.9
LSM6-201ENST00000296581 LMTK3Q96Q04 1460 aa20.64■□□□□ 0.9
LSM6-201ENST00000296581 PNPLA6Q8IY17 1366 aa20.64■□□□□ 0.89
LSM6-201ENST00000296581 MAP2P11137 1827 aaKnown RBP20.64■□□□□ 0.89
LSM6-201ENST00000296581 AATKQ6ZMQ8 1374 aa20.64■□□□□ 0.89
LSM6-201ENST00000296581 COG3Q96JB2 828 aa20.62■□□□□ 0.89
LSM6-201ENST00000296581 PMFBP1Q8TBY8 1022 aa20.61■□□□□ 0.89
LSM6-201ENST00000296581 ZRANB1Q9UGI0 708 aa20.61■□□□□ 0.89
LSM6-201ENST00000296581 OVOS2A0A0J9YW53 1432 aa20.61■□□□□ 0.89
LSM6-201ENST00000296581 OVOS2Q6IE36 1432 aa20.61■□□□□ 0.89
LSM6-201ENST00000296581 SALL2Q9Y467 1007 aaPredicted RBP20.61■□□□□ 0.89
LSM6-201ENST00000296581 TTC21AQ8NDW8 1320 aa20.61■□□□□ 0.89
LSM6-201ENST00000296581 HSPA2P54652 639 aa20.6■□□□□ 0.89
LSM6-201ENST00000296581 POLKQ9UBT6 870 aa20.6■□□□□ 0.89
LSM6-201ENST00000296581 CCDC146Q8IYE0 955 aa20.6■□□□□ 0.89
LSM6-201ENST00000296581 RBM33Q96EV2 1170 aaKnown RBP20.6■□□□□ 0.89
LSM6-201ENST00000296581 STRCP1A6NGW2 1772 aa20.59■□□□□ 0.89
LSM6-201ENST00000296581 NGDNQ8NEJ9 315 aaKnown RBP20.59■□□□□ 0.89
LSM6-201ENST00000296581 SUPT16HQ9Y5B9 1047 aaKnown RBP20.59■□□□□ 0.89
LSM6-201ENST00000296581 ZNF521Q96K83 1311 aa20.58■□□□□ 0.89
LSM6-201ENST00000296581 STRCQ7RTU9 1775 aa20.58■□□□□ 0.88
LSM6-201ENST00000296581 NGEFQ8N5V2 710 aa20.58■□□□□ 0.88
LSM6-201ENST00000296581 CDK12Q9NYV4 1490 aaPredicted RBP20.57■□□□□ 0.88
LSM6-201ENST00000296581 PROSER2Q86WR7 435 aaPredicted RBP20.56■□□□□ 0.88
LSM6-201ENST00000296581 IQSEC2Q5JU85 1478 aa20.56■□□□□ 0.88
LSM6-201ENST00000296581 APAF1O14727 1248 aa20.56■□□□□ 0.88
LSM6-201ENST00000296581 NEFLP07196 543 aa20.56■□□□□ 0.88
LSM6-201ENST00000296581 RUNDC1Q96C34 613 aa20.56■□□□□ 0.88
LSM6-201ENST00000296581 USP31Q70CQ4 1352 aa20.55■□□□□ 0.88
LSM6-201ENST00000296581 PIK3C2AO00443 1686 aa20.55■□□□□ 0.88
LSM6-201ENST00000296581 USP54Q70EL1 1684 aa20.55■□□□□ 0.88
LSM6-201ENST00000296581 FBLN1P23142 703 aa20.55■□□□□ 0.88
LSM6-201ENST00000296581 DIAPH1O60610 1272 aaKnown RBP20.54■□□□□ 0.88
LSM6-201ENST00000296581 PHF8Q9UPP1 1060 aa20.54■□□□□ 0.88
LSM6-201ENST00000296581 NCOA3Q9Y6Q9 1424 aa20.54■□□□□ 0.88
LSM6-201ENST00000296581 U2AF1L5P0DN76 240 aaPredicted RBP20.53■□□□□ 0.88
LSM6-201ENST00000296581 U2AF1Q01081 240 aaKnown RBP eCLIP20.53■□□□□ 0.88
LSM6-201ENST00000296581 C14orf37Q86TY3 774 aa20.53■□□□□ 0.88
LSM6-201ENST00000296581 FKBP8Q14318 412 aa20.52■□□□□ 0.88
LSM6-201ENST00000296581 CDCA7LQ96GN5 454 aa20.52■□□□□ 0.88
LSM6-201ENST00000296581 EMILIN1Q9Y6C2 1016 aa20.52■□□□□ 0.88
LSM6-201ENST00000296581 LRRC7Q96NW7 1537 aa20.51■□□□□ 0.87
LSM6-201ENST00000296581 MARF1Q9Y4F3 1742 aaKnown RBP20.5■□□□□ 0.87
LSM6-201ENST00000296581 NCBP3Q53F19 620 aaKnown RBP20.5■□□□□ 0.87
LSM6-201ENST00000296581 C19orf44Q9H6X5 657 aa20.5■□□□□ 0.87
LSM6-201ENST00000296581 TMEM94Q12767 1356 aa20.49■□□□□ 0.87
LSM6-201ENST00000296581 U2SURPO15042 1029 aaKnown RBP20.49■□□□□ 0.87
LSM6-201ENST00000296581 RNF123Q5XPI4 1314 aa20.49■□□□□ 0.87
LSM6-201ENST00000296581 PPM1GO15355 546 aaPredicted RBP20.48■□□□□ 0.87
LSM6-201ENST00000296581 DCCP43146 1447 aa20.48■□□□□ 0.87
LSM6-201ENST00000296581 GOLGA2Q08379 1002 aa20.48■□□□□ 0.87
LSM6-201ENST00000296581 RRS1Q15050 365 aaKnown RBP20.48■□□□□ 0.87
LSM6-201ENST00000296581 TCP11L2Q8N4U5 519 aa20.48■□□□□ 0.87
LSM6-201ENST00000296581 ESCO1Q5FWF5 840 aa20.47■□□□□ 0.87
LSM6-201ENST00000296581 PLEKHF1Q96S99 279 aa20.47■□□□□ 0.87
LSM6-201ENST00000296581 KIF1AQ12756 1690 aa20.47■□□□□ 0.87
LSM6-201ENST00000296581 PHF23Q9BUL5 403 aaPredicted RBP20.47■□□□□ 0.87
LSM6-201ENST00000296581 PEAK1Q9H792 1746 aa20.46■□□□□ 0.87
LSM6-201ENST00000296581 IL13P35225 146 aa20.46■□□□□ 0.87
LSM6-201ENST00000296581 C1orf167Q5SNV9 1468 aa20.46■□□□□ 0.87
LSM6-201ENST00000296581 SLFN5Q08AF3 891 aa20.44■□□□□ 0.86
LSM6-201ENST00000296581 CCDC27Q2M243 656 aa20.44■□□□□ 0.86
LSM6-201ENST00000296581 TRMT2AQ8IZ69 625 aaKnown RBP20.44■□□□□ 0.86
LSM6-201ENST00000296581 PNNQ9H307 717 aaKnown RBP20.44■□□□□ 0.86
LSM6-201ENST00000296581 XIRP1Q702N8 1843 aaKnown RBP20.44■□□□□ 0.86
LSM6-201ENST00000296581 FCHSD2O94868 740 aa20.43■□□□□ 0.86
LSM6-201ENST00000296581 DUSP27Q5VZP5 1158 aa20.43■□□□□ 0.86
LSM6-201ENST00000296581 WWC1Q8IX03 1113 aa20.43■□□□□ 0.86
LSM6-201ENST00000296581 ORAI2Q96SN7 254 aa20.43■□□□□ 0.86
LSM6-201ENST00000296581 MST1RQ04912 1400 aa20.43■□□□□ 0.86
LSM6-201ENST00000296581 NLRP6P59044 892 aa20.42■□□□□ 0.86
LSM6-201ENST00000296581 ERICH6BQ5W0A0 696 aa20.41■□□□□ 0.86
LSM6-201ENST00000296581 RSPH6AQ9H0K4 717 aa20.41■□□□□ 0.86
LSM6-201ENST00000296581 RCAN3Q9UKA8 241 aa20.41■□□□□ 0.86
LSM6-201ENST00000296581 PSME1Q06323 249 aa20.41■□□□□ 0.86
LSM6-201ENST00000296581 ABTB2Q8N961 1025 aa20.41■□□□□ 0.86
LSM6-201ENST00000296581 RRP7AQ9Y3A4 280 aaKnown RBP20.41■□□□□ 0.86
LSM6-201ENST00000296581 TRPM3Q9HCF6 1732 aaPredicted RBP20.4■□□□□ 0.86
LSM6-201ENST00000296581 E9PSI1 815 aa20.4■□□□□ 0.86
LSM6-201ENST00000296581 SBNO1A3KN83 1393 aa20.4■□□□□ 0.86
LSM6-201ENST00000296581 MAP3K19Q56UN5 1328 aa20.4■□□□□ 0.86
LSM6-201ENST00000296581 PAK3O75914 559 aaPredicted RBP20.39■□□□□ 0.86
LSM6-201ENST00000296581 ATF3P18847 181 aa20.39■□□□□ 0.86
LSM6-201ENST00000296581 MAPK8IP3Q9UPT6 1336 aa20.39■□□□□ 0.85
LSM6-201ENST00000296581 SPINK5Q9NQ38 1064 aaPredicted RBP20.39■□□□□ 0.85
LSM6-201ENST00000296581 RGPD1P0DJD0 1748 aa20.38■□□□□ 0.85
LSM6-201ENST00000296581 WDR63Q8IWG1 891 aa20.38■□□□□ 0.85
LSM6-201ENST00000296581 DMRT2Q9Y5R5 561 aa20.38■□□□□ 0.85
LSM6-201ENST00000296581 KIF24Q5T7B8 1368 aa20.38■□□□□ 0.85
LSM6-201ENST00000296581 TMPOP42166 694 aaKnown RBP20.38■□□□□ 0.85
LSM6-201ENST00000296581 NEUROD2Q15784 382 aa20.38■□□□□ 0.85
LSM6-201ENST00000296581 FLT4P35916 1363 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms