RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 CCDC113Q9H0I3 377 aa13.91□□□□□ -0.18
SHROOM3-201ENST00000296043 ARID4AP29374 1257 aaPredicted RBP13.91□□□□□ -0.18
SHROOM3-201ENST00000296043 NPM1P06748 294 aaKnown RBP eCLIP13.91□□□□□ -0.18
SHROOM3-201ENST00000296043 LUZP1Q86V48 1076 aa13.91□□□□□ -0.18
SHROOM3-201ENST00000296043 HDAC5Q9UQL6 1122 aa13.91□□□□□ -0.18
SHROOM3-201ENST00000296043 SSR1P43307 286 aaKnown RBP13.9□□□□□ -0.18
SHROOM3-201ENST00000296043 TRMT1Q9NXH9 659 aaKnown RBP13.9□□□□□ -0.18
SHROOM3-201ENST00000296043 KIF2AO00139 706 aaPredicted RBP13.9□□□□□ -0.18
SHROOM3-201ENST00000296043 K7ELQ4 463 aaPredicted RBP13.9□□□□□ -0.18
SHROOM3-201ENST00000296043 CEP57Q86XR8 500 aa13.9□□□□□ -0.18
SHROOM3-201ENST00000296043 PANK3Q9H999 370 aa13.89□□□□□ -0.19
SHROOM3-201ENST00000296043 RAI14Q9P0K7 980 aa13.89□□□□□ -0.19
SHROOM3-201ENST00000296043 KIAA1328Q86T90 577 aa13.89□□□□□ -0.19
SHROOM3-201ENST00000296043 STK38Q15208 465 aa13.89□□□□□ -0.19
SHROOM3-201ENST00000296043 ATP2B1P20020 1258 aa13.89□□□□□ -0.19
SHROOM3-201ENST00000296043 PLEKHD1A6NEE1 506 aa13.89□□□□□ -0.19
SHROOM3-201ENST00000296043 LIG1P18858 919 aa13.89□□□□□ -0.19
SHROOM3-201ENST00000296043 CAMK4Q16566 473 aa13.89□□□□□ -0.19
SHROOM3-201ENST00000296043 C10orf67Q8IYJ2 551 aa13.89□□□□□ -0.19
SHROOM3-201ENST00000296043 RAD21O60216 631 aa13.88□□□□□ -0.19
SHROOM3-201ENST00000296043 WDR66Q8TBY9 1149 aa13.88□□□□□ -0.19
SHROOM3-201ENST00000296043 SCLT1Q96NL6 688 aa13.88□□□□□ -0.19
SHROOM3-201ENST00000296043 CBFA2T2O43439 604 aa13.88□□□□□ -0.19
SHROOM3-201ENST00000296043 CCDC148Q8NFR7 591 aa13.88□□□□□ -0.19
SHROOM3-201ENST00000296043 APAF1O14727 1248 aa13.88□□□□□ -0.19
SHROOM3-201ENST00000296043 ZNF396Q96N95 335 aaPredicted RBP13.88□□□□□ -0.19
SHROOM3-201ENST00000296043 FHAD1B1AJZ9 1412 aa13.88□□□□□ -0.19
SHROOM3-201ENST00000296043 DHX8Q14562 1220 aaKnown RBP13.88□□□□□ -0.19
SHROOM3-201ENST00000296043 SMARCC1Q92922 1105 aaPredicted RBP13.88□□□□□ -0.19
SHROOM3-201ENST00000296043 ME1P48163 572 aa13.88□□□□□ -0.19
SHROOM3-201ENST00000296043 NAA25Q14CX7 972 aa13.88□□□□□ -0.19
SHROOM3-201ENST00000296043 ANKRD18AQ8IVF6 992 aa13.88□□□□□ -0.19
SHROOM3-201ENST00000296043 VPS8Q8N3P4 1428 aa13.87□□□□□ -0.19
SHROOM3-201ENST00000296043 ARHGAP29Q52LW3 1261 aa13.87□□□□□ -0.19
SHROOM3-201ENST00000296043 TMCO5BA8MYB1 307 aa13.87□□□□□ -0.19
SHROOM3-201ENST00000296043 GBP3Q9H0R5 595 aa13.87□□□□□ -0.19
SHROOM3-201ENST00000296043 NINLQ9Y2I6 1382 aa13.87□□□□□ -0.19
SHROOM3-201ENST00000296043 L3MBTL2Q969R5 705 aa13.87□□□□□ -0.19
SHROOM3-201ENST00000296043 DHX16O60231 1041 aaKnown RBP13.87□□□□□ -0.19
SHROOM3-201ENST00000296043 DRC1Q96MC2 740 aa13.87□□□□□ -0.19
SHROOM3-201ENST00000296043 PDZRN3Q9UPQ7 1066 aa13.87□□□□□ -0.19
SHROOM3-201ENST00000296043 MICALL1Q8N3F8 863 aa13.86□□□□□ -0.19
SHROOM3-201ENST00000296043 KANK4Q5T7N3 995 aaPredicted RBP13.86□□□□□ -0.19
SHROOM3-201ENST00000296043 ZBTB9Q96C00 473 aa13.86□□□□□ -0.19
SHROOM3-201ENST00000296043 CCDC175P0C221 793 aa13.86□□□□□ -0.19
SHROOM3-201ENST00000296043 TRDNQ13061 729 aa13.86□□□□□ -0.19
SHROOM3-201ENST00000296043 URI1O94763 535 aaPredicted RBP13.86□□□□□ -0.19
SHROOM3-201ENST00000296043 PDCP20941 246 aa13.86□□□□□ -0.19
SHROOM3-201ENST00000296043 SFPQP23246 707 aaKnown RBP eCLIP13.86□□□□□ -0.19
SHROOM3-201ENST00000296043 EPB41L2O43491 1005 aaKnown RBP13.86□□□□□ -0.19
SHROOM3-201ENST00000296043 CEP57L1Q8IYX8 460 aa13.86□□□□□ -0.19
SHROOM3-201ENST00000296043 NECTIN2Q92692 538 aa13.86□□□□□ -0.19
SHROOM3-201ENST00000296043 MPHOSPH9Q99550 1183 aa13.86□□□□□ -0.19
SHROOM3-201ENST00000296043 NUP62CLQ9H1M0 184 aa13.86□□□□□ -0.19
SHROOM3-201ENST00000296043 FAM177BA6PVY3 158 aa13.85□□□□□ -0.19
SHROOM3-201ENST00000296043 KANK1Q14678 1352 aa13.85□□□□□ -0.19
SHROOM3-201ENST00000296043 WDR33Q9C0J8 1336 aaKnown RBP13.85□□□□□ -0.19
SHROOM3-201ENST00000296043 SEPT6Q14141 434 aa13.85□□□□□ -0.19
SHROOM3-201ENST00000296043 CCDC160A6NGH7 325 aa13.85□□□□□ -0.19
SHROOM3-201ENST00000296043 UBE4AQ14139 1066 aa13.85□□□□□ -0.19
SHROOM3-201ENST00000296043 SMAP1Q8IYB5 467 aaPredicted RBP13.85□□□□□ -0.19
SHROOM3-201ENST00000296043 CWC22Q9HCG8 908 aaKnown RBP13.85□□□□□ -0.19
SHROOM3-201ENST00000296043 IFFO1Q0D2I5 559 aa13.85□□□□□ -0.19
SHROOM3-201ENST00000296043 MSL1Q68DK7 614 aa13.85□□□□□ -0.19
SHROOM3-201ENST00000296043 GBP6Q6ZN66 633 aa13.85□□□□□ -0.19
SHROOM3-201ENST00000296043 ROCK1Q13464 1354 aa13.85□□□□□ -0.19
SHROOM3-201ENST00000296043 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.85□□□□□ -0.19
SHROOM3-201ENST00000296043 SERPINA10Q9UK55 444 aa13.84□□□□□ -0.19
SHROOM3-201ENST00000296043 MPHOSPH10O00566 681 aaKnown RBP13.84□□□□□ -0.19
SHROOM3-201ENST00000296043 IVLP07476 585 aa13.84□□□□□ -0.19
SHROOM3-201ENST00000296043 CCDC43Q96MW1 224 aaKnown RBP13.84□□□□□ -0.19
SHROOM3-201ENST00000296043 USP47Q96K76 1375 aa13.84□□□□□ -0.19
SHROOM3-201ENST00000296043 BMS1Q14692 1282 aaKnown RBP13.84□□□□□ -0.19
SHROOM3-201ENST00000296043 UPF3BQ9BZI7 483 aaKnown RBP13.84□□□□□ -0.19
SHROOM3-201ENST00000296043 RASSF4Q9H2L5 321 aa13.84□□□□□ -0.19
SHROOM3-201ENST00000296043 HYPKQ9NX55 129 aa13.84□□□□□ -0.19
SHROOM3-201ENST00000296043 CLIP2Q9UDT6 1046 aa13.83□□□□□ -0.19
SHROOM3-201ENST00000296043 HSPA4P34932 840 aa13.83□□□□□ -0.19
SHROOM3-201ENST00000296043 DHX57Q6P158 1386 aaKnown RBP13.83□□□□□ -0.2
SHROOM3-201ENST00000296043 CEP135Q66GS9 1140 aa13.83□□□□□ -0.2
SHROOM3-201ENST00000296043 GOPCQ9HD26 462 aa13.83□□□□□ -0.2
SHROOM3-201ENST00000296043 MAP3K11Q16584 847 aa13.83□□□□□ -0.2
SHROOM3-201ENST00000296043 STK3Q13188 491 aa13.83□□□□□ -0.2
SHROOM3-201ENST00000296043 USP25Q9UHP3 1055 aa13.83□□□□□ -0.2
SHROOM3-201ENST00000296043 C9orf78Q9NZ63 289 aaPredicted RBP13.83□□□□□ -0.2
SHROOM3-201ENST00000296043 CIZ1Q9ULV3 898 aaPredicted RBP13.82□□□□□ -0.2
SHROOM3-201ENST00000296043 PRIMPOLQ96LW4 560 aa13.82□□□□□ -0.2
SHROOM3-201ENST00000296043 BANK1Q8NDB2 785 aa13.82□□□□□ -0.2
SHROOM3-201ENST00000296043 EIF4G1Q04637 1599 aaKnown RBP13.82□□□□□ -0.2
SHROOM3-201ENST00000296043 SEPT11Q9NVA2 429 aaKnown RBP13.82□□□□□ -0.2
SHROOM3-201ENST00000296043 KRT85P78386 507 aa13.81□□□□□ -0.2
SHROOM3-201ENST00000296043 KIF5CO60282 957 aa13.81□□□□□ -0.2
SHROOM3-201ENST00000296043 CLCN1P35523 988 aa13.81□□□□□ -0.2
SHROOM3-201ENST00000296043 ZNF830Q96NB3 372 aaPredicted RBP13.81□□□□□ -0.2
SHROOM3-201ENST00000296043 PSMA5P28066 241 aa13.81□□□□□ -0.2
SHROOM3-201ENST00000296043 TXLNAP40222 546 aa13.81□□□□□ -0.2
SHROOM3-201ENST00000296043 LUC7LQ9NQ29 371 aaKnown RBP13.81□□□□□ -0.2
SHROOM3-201ENST00000296043 LTV1Q96GA3 475 aaPredicted RBP13.81□□□□□ -0.2
SHROOM3-201ENST00000296043 SPATA32Q96LK8 384 aa13.81□□□□□ -0.2
SHROOM3-201ENST00000296043 SUDS3Q9H7L9 328 aaPredicted RBP13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms