RNA–Protein interactions for RNA: ENST00000295522.3

CLDN1-201, Transcript of claudin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-201ENST00000295522 NSFL1CQ9UNZ2 370 aaKnown RBP12.48□□□□□ -0.41
CLDN1-201ENST00000295522 LETM1O95202 739 aaPredicted RBP12.47□□□□□ -0.41
CLDN1-201ENST00000295522 HMGN5P82970 282 aaKnown RBP12.47□□□□□ -0.41
CLDN1-201ENST00000295522 GPT2Q8TD30 523 aa12.47□□□□□ -0.41
CLDN1-201ENST00000295522 MAGI1Q96QZ7 1491 aaPredicted RBP12.47□□□□□ -0.41
CLDN1-201ENST00000295522 NOLC1Q14978 699 aaKnown RBP eCLIP12.47□□□□□ -0.41
CLDN1-201ENST00000295522 LRSAM1Q6UWE0 723 aa12.47□□□□□ -0.41
CLDN1-201ENST00000295522 SSH1Q8WYL5 1049 aa12.47□□□□□ -0.41
CLDN1-201ENST00000295522 ELL2O00472 640 aaPredicted RBP12.47□□□□□ -0.41
CLDN1-201ENST00000295522 TSPY26PQ9H489 355 aa12.47□□□□□ -0.41
CLDN1-201ENST00000295522 RTEL1-TNFRSF6BF6WH68 1400 aa12.47□□□□□ -0.41
CLDN1-201ENST00000295522 KIF20AO95235 890 aa12.46□□□□□ -0.41
CLDN1-201ENST00000295522 SPC24Q8NBT2 197 aa12.46□□□□□ -0.41
CLDN1-201ENST00000295522 TROQ12816 1431 aaPredicted RBP12.46□□□□□ -0.41
CLDN1-201ENST00000295522 NUP153P49790 1475 aaKnown RBP12.46□□□□□ -0.41
CLDN1-201ENST00000295522 ERICH4A6NGS2 130 aa12.46□□□□□ -0.41
CLDN1-201ENST00000295522 MCM5P33992 734 aa12.46□□□□□ -0.41
CLDN1-201ENST00000295522 CFAP53Q96M91 514 aa12.46□□□□□ -0.41
CLDN1-201ENST00000295522 DNMT1P26358 1616 aaKnown RBP12.46□□□□□ -0.41
CLDN1-201ENST00000295522 AK9Q5TCS8 1911 aa12.46□□□□□ -0.42
CLDN1-201ENST00000295522 KCNJ4P48050 445 aa12.46□□□□□ -0.42
CLDN1-201ENST00000295522 ATF7IPQ6VMQ6 1270 aa12.46□□□□□ -0.42
CLDN1-201ENST00000295522 ZNF710Q8N1W2 664 aa12.45□□□□□ -0.42
CLDN1-201ENST00000295522 PDLIM2Q96JY6 352 aa12.45□□□□□ -0.42
CLDN1-201ENST00000295522 BCL2L12Q9HB09 334 aa12.45□□□□□ -0.42
CLDN1-201ENST00000295522 ST18O60284 1047 aa12.45□□□□□ -0.42
CLDN1-201ENST00000295522 KIF2CQ99661 725 aa12.45□□□□□ -0.42
CLDN1-201ENST00000295522 C9orf84Q5VXU9 1444 aa12.45□□□□□ -0.42
CLDN1-201ENST00000295522 MTHFSP49914 203 aa12.44□□□□□ -0.42
CLDN1-201ENST00000295522 AEBP2Q6ZN18 517 aaPredicted RBP12.44□□□□□ -0.42
CLDN1-201ENST00000295522 ARHGEF12Q9NZN5 1544 aa12.44□□□□□ -0.42
CLDN1-201ENST00000295522 CEP170Q5SW79 1584 aa12.43□□□□□ -0.42
CLDN1-201ENST00000295522 HDAC1Q13547 482 aaPredicted RBP12.43□□□□□ -0.42
CLDN1-201ENST00000295522 GPATCH8Q9UKJ3 1502 aaKnown RBP12.43□□□□□ -0.42
CLDN1-201ENST00000295522 CDC45O75419 566 aa12.43□□□□□ -0.42
CLDN1-201ENST00000295522 NUCB1Q02818 461 aa12.43□□□□□ -0.42
CLDN1-201ENST00000295522 VIRMAQ69YN4 1812 aaKnown RBP12.43□□□□□ -0.42
CLDN1-201ENST00000295522 BMP2KLQ5H9B9 411 aa12.42□□□□□ -0.42
CLDN1-201ENST00000295522 SYAP1Q96A49 352 aaPredicted RBP12.42□□□□□ -0.42
CLDN1-201ENST00000295522 PRIMPOLQ96LW4 560 aa12.42□□□□□ -0.42
CLDN1-201ENST00000295522 RABEP1Q15276 862 aa12.42□□□□□ -0.42
CLDN1-201ENST00000295522 NGEFQ8N5V2 710 aa12.42□□□□□ -0.42
CLDN1-201ENST00000295522 E9PCH4 1651 aa12.42□□□□□ -0.42
CLDN1-201ENST00000295522 IPO8O15397 1037 aaKnown RBP12.42□□□□□ -0.42
CLDN1-201ENST00000295522 AEBP1Q8IUX7 1158 aa12.42□□□□□ -0.42
CLDN1-201ENST00000295522 ZNF592Q92610 1267 aa12.42□□□□□ -0.42
CLDN1-201ENST00000295522 ADCY5O95622 1261 aa12.41□□□□□ -0.42
CLDN1-201ENST00000295522 PAXIP1Q6ZW49 1069 aaPredicted RBP12.41□□□□□ -0.42
CLDN1-201ENST00000295522 CARMIL2Q6F5E8 1435 aa12.41□□□□□ -0.42
CLDN1-201ENST00000295522 NCOA3Q9Y6Q9 1424 aa12.41□□□□□ -0.42
CLDN1-201ENST00000295522 WDR63Q8IWG1 891 aa12.41□□□□□ -0.42
CLDN1-201ENST00000295522 DRC7Q8IY82 874 aa12.41□□□□□ -0.42
CLDN1-201ENST00000295522 CHD1O14646 1710 aa12.4□□□□□ -0.42
CLDN1-201ENST00000295522 RIOK3O14730 519 aaKnown RBP12.4□□□□□ -0.42
CLDN1-201ENST00000295522 HCLS1P14317 486 aaPredicted RBP12.4□□□□□ -0.42
CLDN1-201ENST00000295522 CARD14Q9BXL6 1004 aa12.4□□□□□ -0.42
CLDN1-201ENST00000295522 TMEM51Q9NW97 253 aa12.4□□□□□ -0.42
CLDN1-201ENST00000295522 IBTKQ9P2D0 1353 aaPredicted RBP12.4□□□□□ -0.42
CLDN1-201ENST00000295522 MBD3O95983 291 aa12.39□□□□□ -0.43
CLDN1-201ENST00000295522 DIAPH3Q9NSV4 1193 aa12.39□□□□□ -0.43
CLDN1-201ENST00000295522 PIK3C2GO75747 1445 aa12.39□□□□□ -0.43
CLDN1-201ENST00000295522 NEK4P51957 841 aa12.39□□□□□ -0.43
CLDN1-201ENST00000295522 CASC1Q6TDU7 716 aa12.39□□□□□ -0.43
CLDN1-201ENST00000295522 CHMP3Q9Y3E7 222 aa12.39□□□□□ -0.43
CLDN1-201ENST00000295522 ASXL1Q8IXJ9 1541 aa12.39□□□□□ -0.43
CLDN1-201ENST00000295522 NPHP1O15259 732 aa12.39□□□□□ -0.43
CLDN1-201ENST00000295522 PIBF1Q8WXW3 757 aa12.39□□□□□ -0.43
CLDN1-201ENST00000295522 GPRASP1Q5JY77 1395 aa12.38□□□□□ -0.43
CLDN1-201ENST00000295522 CERS3Q8IU89 383 aa12.38□□□□□ -0.43
CLDN1-201ENST00000295522 SLC12A5Q9H2X9 1139 aa12.38□□□□□ -0.43
CLDN1-201ENST00000295522 WDR7Q9Y4E6 1490 aa12.37□□□□□ -0.43
CLDN1-201ENST00000295522 ZBTB40Q9NUA8 1239 aa12.37□□□□□ -0.43
CLDN1-201ENST00000295522 A2MP01023 1474 aa12.37□□□□□ -0.43
CLDN1-201ENST00000295522 FAM135AQ9P2D6 1515 aa12.37□□□□□ -0.43
CLDN1-201ENST00000295522 PHF14O94880 888 aa12.37□□□□□ -0.43
CLDN1-201ENST00000295522 IFT57Q9NWB7 429 aa12.37□□□□□ -0.43
CLDN1-201ENST00000295522 ZMYM3Q14202 1370 aa12.37□□□□□ -0.43
CLDN1-201ENST00000295522 C16orf45Q96MC5 204 aaPredicted RBP12.36□□□□□ -0.43
CLDN1-201ENST00000295522 DISP1Q96F81 1524 aa12.36□□□□□ -0.43
CLDN1-201ENST00000295522 C16orf71Q8IYS4 520 aaPredicted RBP12.36□□□□□ -0.43
CLDN1-201ENST00000295522 OSCARQ8IYS5 282 aa12.36□□□□□ -0.43
CLDN1-201ENST00000295522 CFAP70Q5T0N1 1121 aa12.36□□□□□ -0.43
CLDN1-201ENST00000295522 CWC22Q9HCG8 908 aaKnown RBP12.36□□□□□ -0.43
CLDN1-201ENST00000295522 DTNBO60941 627 aa12.35□□□□□ -0.43
CLDN1-201ENST00000295522 GADD45BO75293 160 aaPredicted RBP12.35□□□□□ -0.43
CLDN1-201ENST00000295522 SAFB2Q14151 953 aaKnown RBP eCLIP12.35□□□□□ -0.43
CLDN1-201ENST00000295522 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.35□□□□□ -0.43
CLDN1-201ENST00000295522 V9GYY5 206 aaPredicted RBP12.35□□□□□ -0.43
CLDN1-201ENST00000295522 NUP160Q12769 1436 aa12.35□□□□□ -0.43
CLDN1-201ENST00000295522 CCDC27Q2M243 656 aa12.35□□□□□ -0.43
CLDN1-201ENST00000295522 IPO4Q8TEX9 1081 aaKnown RBP12.35□□□□□ -0.43
CLDN1-201ENST00000295522 SMARCA5O60264 1052 aaPredicted RBP12.34□□□□□ -0.43
CLDN1-201ENST00000295522 TRAK1Q9UPV9 953 aa12.34□□□□□ -0.43
CLDN1-201ENST00000295522 TNNT3P45378 269 aaPredicted RBP12.34□□□□□ -0.43
CLDN1-201ENST00000295522 NAA30Q147X3 362 aaPredicted RBP12.34□□□□□ -0.43
CLDN1-201ENST00000295522 NUTM2DQ5VT03 806 aaPredicted RBP12.34□□□□□ -0.43
CLDN1-201ENST00000295522 TAF3Q5VWG9 929 aa12.34□□□□□ -0.43
CLDN1-201ENST00000295522 INTS3Q68E01 1043 aaKnown RBP12.34□□□□□ -0.43
CLDN1-201ENST00000295522 ZDHHC9Q9Y397 364 aa12.34□□□□□ -0.43
CLDN1-201ENST00000295522 FIBPO43427 364 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms