RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 GOLGA6L19H0YKK7 550 aa22.48■■□□□ 1.19
PCDH1-201ENST00000287008 CCDC141Q6ZP82 1450 aa22.48■■□□□ 1.19
PCDH1-201ENST00000287008 FYB1O15117 783 aa22.47■■□□□ 1.19
PCDH1-201ENST00000287008 TSR1Q2NL82 804 aaKnown RBP22.47■■□□□ 1.19
PCDH1-201ENST00000287008 IQGAP2Q13576 1575 aa22.47■■□□□ 1.19
PCDH1-201ENST00000287008 SLC4A2P04920 1241 aa22.47■■□□□ 1.19
PCDH1-201ENST00000287008 FSD1Q9BTV5 496 aa22.47■■□□□ 1.19
PCDH1-201ENST00000287008 SAFBQ15424 915 aaKnown RBP eCLIP22.47■■□□□ 1.19
PCDH1-201ENST00000287008 KCNH5Q8NCM2 988 aa22.46■■□□□ 1.19
PCDH1-201ENST00000287008 CDCA7LQ96GN5 454 aa22.46■■□□□ 1.19
PCDH1-201ENST00000287008 TIAM1Q13009 1591 aa22.45■■□□□ 1.18
PCDH1-201ENST00000287008 RRS1Q15050 365 aaKnown RBP22.45■■□□□ 1.18
PCDH1-201ENST00000287008 SLC4A3P48751 1232 aa22.45■■□□□ 1.18
PCDH1-201ENST00000287008 SMC3Q9UQE7 1217 aa22.45■■□□□ 1.18
PCDH1-201ENST00000287008 PPP1R1BQ9UD71 204 aaPredicted RBP22.44■■□□□ 1.18
PCDH1-201ENST00000287008 VPS37CA5D8V6 355 aaPredicted RBP22.44■■□□□ 1.18
PCDH1-201ENST00000287008 CNTROBQ8N137 903 aa22.44■■□□□ 1.18
PCDH1-201ENST00000287008 CNNM1Q9NRU3 951 aa22.44■■□□□ 1.18
PCDH1-201ENST00000287008 PLB1Q6P1J6 1458 aa22.44■■□□□ 1.18
PCDH1-201ENST00000287008 TPM2P07951 284 aa22.43■■□□□ 1.18
PCDH1-201ENST00000287008 PDE4CQ08493 712 aa22.43■■□□□ 1.18
PCDH1-201ENST00000287008 GNAI2P04899 355 aa22.43■■□□□ 1.18
PCDH1-201ENST00000287008 TSR2Q969E8 191 aaKnown RBP22.43■■□□□ 1.18
PCDH1-201ENST00000287008 CCDC43Q96MW1 224 aaKnown RBP22.43■■□□□ 1.18
PCDH1-201ENST00000287008 ADGRL1O94910 1474 aa22.43■■□□□ 1.18
PCDH1-201ENST00000287008 SKOR2Q2VWA4 1001 aaPredicted RBP22.43■■□□□ 1.18
PCDH1-201ENST00000287008 GRIN2AQ12879 1464 aa22.43■■□□□ 1.18
PCDH1-201ENST00000287008 ERC1Q8IUD2 1116 aa22.42■■□□□ 1.18
PCDH1-201ENST00000287008 NINLQ9Y2I6 1382 aa22.42■■□□□ 1.18
PCDH1-201ENST00000287008 CDC45O75419 566 aa22.42■■□□□ 1.18
PCDH1-201ENST00000287008 SRCIN1Q9C0H9 1055 aa22.42■■□□□ 1.18
PCDH1-201ENST00000287008 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.42■■□□□ 1.18
PCDH1-201ENST00000287008 TPM1P09493 284 aa22.42■■□□□ 1.18
PCDH1-201ENST00000287008 WAPLQ7Z5K2 1190 aa22.41■■□□□ 1.18
PCDH1-201ENST00000287008 BICD2Q8TD16 824 aa22.41■■□□□ 1.18
PCDH1-201ENST00000287008 GNL3LQ9NVN8 582 aaKnown RBP22.4■■□□□ 1.18
PCDH1-201ENST00000287008 SART3Q15020 963 aaKnown RBP22.39■■□□□ 1.18
PCDH1-201ENST00000287008 FCHSD2O94868 740 aa22.39■■□□□ 1.18
PCDH1-201ENST00000287008 CCT4P50991 539 aaKnown RBP22.39■■□□□ 1.18
PCDH1-201ENST00000287008 DNAJC2Q99543 621 aaKnown RBP22.39■■□□□ 1.18
PCDH1-201ENST00000287008 SUPT6HQ7KZ85 1726 aaKnown RBP22.39■■□□□ 1.17
PCDH1-201ENST00000287008 HMGB2P26583 209 aaKnown RBP22.39■■□□□ 1.17
PCDH1-201ENST00000287008 HOOK1Q9UJC3 728 aaKnown RBP22.38■■□□□ 1.17
PCDH1-201ENST00000287008 CEBPAP49715 358 aaPredicted RBP22.38■■□□□ 1.17
PCDH1-201ENST00000287008 PDE3AQ14432 1141 aa22.38■■□□□ 1.17
PCDH1-201ENST00000287008 WDR63Q8IWG1 891 aa22.38■■□□□ 1.17
PCDH1-201ENST00000287008 IDI1Q13907 227 aa22.38■■□□□ 1.17
PCDH1-201ENST00000287008 CT47B1P0C2W7 299 aaPredicted RBP22.37■■□□□ 1.17
PCDH1-201ENST00000287008 CCDC158Q5M9N0 1113 aa22.37■■□□□ 1.17
PCDH1-201ENST00000287008 PSMA5P28066 241 aa22.37■■□□□ 1.17
PCDH1-201ENST00000287008 IKQ13123 557 aaPredicted RBP22.37■■□□□ 1.17
PCDH1-201ENST00000287008 ANKRD20A12PQ8NF67 263 aa22.37■■□□□ 1.17
PCDH1-201ENST00000287008 C22orf23Q9BZE7 217 aa22.37■■□□□ 1.17
PCDH1-201ENST00000287008 MYL6BP14649 208 aa22.37■■□□□ 1.17
PCDH1-201ENST00000287008 MPHOSPH8Q99549 860 aa22.37■■□□□ 1.17
PCDH1-201ENST00000287008 FBXO31Q5XUX0 539 aaPredicted RBP22.36■■□□□ 1.17
PCDH1-201ENST00000287008 AMOTL2Q9Y2J4 779 aa22.36■■□□□ 1.17
PCDH1-201ENST00000287008 CHMP5Q9NZZ3 219 aa22.36■■□□□ 1.17
PCDH1-201ENST00000287008 NAIPQ13075 1403 aa22.36■■□□□ 1.17
PCDH1-201ENST00000287008 HIP1O00291 1037 aa22.35■■□□□ 1.17
PCDH1-201ENST00000287008 FOXO3O43524 673 aa22.35■■□□□ 1.17
PCDH1-201ENST00000287008 XBP1P17861 261 aa22.35■■□□□ 1.17
PCDH1-201ENST00000287008 PRM3Q9NNZ6 103 aa22.35■■□□□ 1.17
PCDH1-201ENST00000287008 PHF8Q9UPP1 1060 aa22.35■■□□□ 1.17
PCDH1-201ENST00000287008 MTMR7Q9Y216 660 aa22.35■■□□□ 1.17
PCDH1-201ENST00000287008 BTBD11A6QL63 1104 aa22.34■■□□□ 1.17
PCDH1-201ENST00000287008 NUCB2P80303 420 aa22.34■■□□□ 1.17
PCDH1-201ENST00000287008 NOB1Q9ULX3 412 aaKnown RBP22.34■■□□□ 1.17
PCDH1-201ENST00000287008 CCDC57Q2TAC2 916 aa22.34■■□□□ 1.17
PCDH1-201ENST00000287008 BRMS1Q9HCU9 246 aa22.34■■□□□ 1.17
PCDH1-201ENST00000287008 PPP6R1Q9UPN7 881 aa22.34■■□□□ 1.17
PCDH1-201ENST00000287008 SLC3A2P08195 630 aaKnown RBP22.33■■□□□ 1.17
PCDH1-201ENST00000287008 GCC1Q96CN9 775 aa22.33■■□□□ 1.17
PCDH1-201ENST00000287008 IPO7O95373 1038 aaKnown RBP22.33■■□□□ 1.16
PCDH1-201ENST00000287008 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.32■■□□□ 1.16
PCDH1-201ENST00000287008 C1orf115Q9H7X2 142 aa22.32■■□□□ 1.16
PCDH1-201ENST00000287008 DENND4BO75064 1496 aaPredicted RBP22.31■■□□□ 1.16
PCDH1-201ENST00000287008 CCDC73Q6ZRK6 1079 aa22.31■■□□□ 1.16
PCDH1-201ENST00000287008 BICRAQ9NZM4 1560 aa22.31■■□□□ 1.16
PCDH1-201ENST00000287008 FOSBP53539 338 aa22.31■■□□□ 1.16
PCDH1-201ENST00000287008 TTC39AQ5SRH9 613 aa22.31■■□□□ 1.16
PCDH1-201ENST00000287008 NSD3Q9BZ95 1437 aa22.3■■□□□ 1.16
PCDH1-201ENST00000287008 NFE2L2Q16236 605 aa22.3■■□□□ 1.16
PCDH1-201ENST00000287008 PCMTD1Q96MG8 357 aaPredicted RBP22.3■■□□□ 1.16
PCDH1-201ENST00000287008 DMRT2Q9Y5R5 561 aa22.3■■□□□ 1.16
PCDH1-201ENST00000287008 STARD3NLO95772 234 aa22.3■■□□□ 1.16
PCDH1-201ENST00000287008 ATF7IPQ6VMQ6 1270 aa22.3■■□□□ 1.16
PCDH1-201ENST00000287008 ZNF428Q96B54 188 aa22.3■■□□□ 1.16
PCDH1-201ENST00000287008 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.3■■□□□ 1.16
PCDH1-201ENST00000287008 A0A0U1RQG5 324 aaPredicted RBP22.29■■□□□ 1.16
PCDH1-201ENST00000287008 SIL1Q9H173 461 aa22.29■■□□□ 1.16
PCDH1-201ENST00000287008 GNAT3A8MTJ3 354 aa22.29■■□□□ 1.16
PCDH1-201ENST00000287008 CEP126Q9P2H0 1117 aa22.29■■□□□ 1.16
PCDH1-201ENST00000287008 AKNAQ7Z591 1439 aa22.28■■□□□ 1.16
PCDH1-201ENST00000287008 CAMSAP2Q08AD1 1489 aa22.28■■□□□ 1.16
PCDH1-201ENST00000287008 BCAR3O75815 825 aa22.27■■□□□ 1.16
PCDH1-201ENST00000287008 PTCD1O75127 700 aaKnown RBP22.27■■□□□ 1.16
PCDH1-201ENST00000287008 RRP12Q5JTH9 1297 aaKnown RBP22.27■■□□□ 1.16
PCDH1-201ENST00000287008 ADAMTS2O95450 1211 aa22.27■■□□□ 1.16
PCDH1-201ENST00000287008 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms