RNA–Protein interactions for RNA: ENST00000271971.6

CAPN9-201, Transcript of calpain 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CAPN9, Length 2,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN9-201ENST00000271971 ZBED9Q6R2W3 1325 aa16.75■□□□□ 0.27
CAPN9-201ENST00000271971 USP6P35125 1406 aa16.74■□□□□ 0.27
CAPN9-201ENST00000271971 MTHFSP49914 203 aa16.74■□□□□ 0.27
CAPN9-201ENST00000271971 ADAMTS8Q9UP79 889 aa16.74■□□□□ 0.27
CAPN9-201ENST00000271971 BLMP54132 1417 aaPredicted RBP16.73■□□□□ 0.27
CAPN9-201ENST00000271971 WDR43Q15061 677 aaKnown RBP eCLIP16.73■□□□□ 0.27
CAPN9-201ENST00000271971 PROSER2Q86WR7 435 aaPredicted RBP16.73■□□□□ 0.27
CAPN9-201ENST00000271971 POLR3AO14802 1390 aaPredicted RBP16.73■□□□□ 0.27
CAPN9-201ENST00000271971 MAP2P11137 1827 aaKnown RBP16.73■□□□□ 0.27
CAPN9-201ENST00000271971 ZNF692Q9BU19 519 aaPredicted RBP16.72■□□□□ 0.27
CAPN9-201ENST00000271971 FBLN1P23142 703 aa16.72■□□□□ 0.27
CAPN9-201ENST00000271971 NGDNQ8NEJ9 315 aaKnown RBP16.71■□□□□ 0.27
CAPN9-201ENST00000271971 TTC21BQ7Z4L5 1316 aa16.71■□□□□ 0.26
CAPN9-201ENST00000271971 SALL2Q9Y467 1007 aaPredicted RBP16.7■□□□□ 0.26
CAPN9-201ENST00000271971 SSH2Q76I76 1423 aa16.69■□□□□ 0.26
CAPN9-201ENST00000271971 TMEM94Q12767 1356 aa16.69■□□□□ 0.26
CAPN9-201ENST00000271971 XIRP1Q702N8 1843 aaKnown RBP16.68■□□□□ 0.26
CAPN9-201ENST00000271971 PIK3C2AO00443 1686 aa16.68■□□□□ 0.26
CAPN9-201ENST00000271971 CCDC146Q8IYE0 955 aa16.67■□□□□ 0.26
CAPN9-201ENST00000271971 COG3Q96JB2 828 aa16.67■□□□□ 0.26
CAPN9-201ENST00000271971 COL3A1P02461 1466 aaPredicted RBP16.67■□□□□ 0.26
CAPN9-201ENST00000271971 INSRP06213 1382 aa16.66■□□□□ 0.26
CAPN9-201ENST00000271971 CFAP53Q96M91 514 aa16.66■□□□□ 0.26
CAPN9-201ENST00000271971 PHF8Q9UPP1 1060 aa16.66■□□□□ 0.26
CAPN9-201ENST00000271971 OVOS2A0A0J9YW53 1432 aa16.66■□□□□ 0.26
CAPN9-201ENST00000271971 OVOS2Q6IE36 1432 aa16.66■□□□□ 0.26
CAPN9-201ENST00000271971 ESCO1Q5FWF5 840 aa16.65■□□□□ 0.26
CAPN9-201ENST00000271971 PPM1GO15355 546 aaPredicted RBP16.64■□□□□ 0.25
CAPN9-201ENST00000271971 ZNF335Q9H4Z2 1342 aaPredicted RBP16.64■□□□□ 0.25
CAPN9-201ENST00000271971 MARF1Q9Y4F3 1742 aaKnown RBP16.64■□□□□ 0.25
CAPN9-201ENST00000271971 ORAI2Q96SN7 254 aa16.64■□□□□ 0.25
CAPN9-201ENST00000271971 POLKQ9UBT6 870 aa16.64■□□□□ 0.25
CAPN9-201ENST00000271971 EMILIN1Q9Y6C2 1016 aa16.64■□□□□ 0.25
CAPN9-201ENST00000271971 RRS1Q15050 365 aaKnown RBP16.63■□□□□ 0.25
CAPN9-201ENST00000271971 C19orf44Q9H6X5 657 aa16.63■□□□□ 0.25
CAPN9-201ENST00000271971 TTC21AQ8NDW8 1320 aa16.62■□□□□ 0.25
CAPN9-201ENST00000271971 SOX12O15370 315 aa16.62■□□□□ 0.25
CAPN9-201ENST00000271971 C1orf167Q5SNV9 1468 aa16.61■□□□□ 0.25
CAPN9-201ENST00000271971 SMG6Q86US8 1419 aaKnown RBP16.61■□□□□ 0.25
CAPN9-201ENST00000271971 PAK3O75914 559 aaPredicted RBP16.6■□□□□ 0.25
CAPN9-201ENST00000271971 NUTM2GQ5VZR2 741 aa16.6■□□□□ 0.25
CAPN9-201ENST00000271971 AATKQ6ZMQ8 1374 aa16.6■□□□□ 0.25
CAPN9-201ENST00000271971 PNPLA6Q8IY17 1366 aa16.6■□□□□ 0.25
CAPN9-201ENST00000271971 MST1RQ04912 1400 aa16.6■□□□□ 0.25
CAPN9-201ENST00000271971 LRRC7Q96NW7 1537 aa16.59■□□□□ 0.25
CAPN9-201ENST00000271971 PEAK1Q9H792 1746 aa16.59■□□□□ 0.25
CAPN9-201ENST00000271971 CDK12Q9NYV4 1490 aaPredicted RBP16.59■□□□□ 0.25
CAPN9-201ENST00000271971 XPCQ01831 940 aaPredicted RBP16.59■□□□□ 0.25
CAPN9-201ENST00000271971 KIF1AQ12756 1690 aa16.59■□□□□ 0.25
CAPN9-201ENST00000271971 U2SURPO15042 1029 aaKnown RBP16.58■□□□□ 0.25
CAPN9-201ENST00000271971 U2AF1L5P0DN76 240 aaPredicted RBP16.58■□□□□ 0.25
CAPN9-201ENST00000271971 ATF3P18847 181 aa16.58■□□□□ 0.25
CAPN9-201ENST00000271971 U2AF1Q01081 240 aaKnown RBP eCLIP16.58■□□□□ 0.25
CAPN9-201ENST00000271971 USP54Q70EL1 1684 aa16.58■□□□□ 0.24
CAPN9-201ENST00000271971 APAF1O14727 1248 aa16.58■□□□□ 0.24
CAPN9-201ENST00000271971 FOXO3O43524 673 aa16.58■□□□□ 0.24
CAPN9-201ENST00000271971 DCCP43146 1447 aa16.58■□□□□ 0.24
CAPN9-201ENST00000271971 USP31Q70CQ4 1352 aa16.57■□□□□ 0.24
CAPN9-201ENST00000271971 NCOA3Q9Y6Q9 1424 aa16.57■□□□□ 0.24
CAPN9-201ENST00000271971 DIAPH1O60610 1272 aaKnown RBP16.57■□□□□ 0.24
CAPN9-201ENST00000271971 PSME1Q06323 249 aa16.57■□□□□ 0.24
CAPN9-201ENST00000271971 MSH6P52701 1360 aa16.57■□□□□ 0.24
CAPN9-201ENST00000271971 NLRP6P59044 892 aa16.56■□□□□ 0.24
CAPN9-201ENST00000271971 ABTB2Q8N961 1025 aa16.56■□□□□ 0.24
CAPN9-201ENST00000271971 TRPM3Q9HCF6 1732 aaPredicted RBP16.55■□□□□ 0.24
CAPN9-201ENST00000271971 IQSEC2Q5JU85 1478 aa16.55■□□□□ 0.24
CAPN9-201ENST00000271971 CDCA7LQ96GN5 454 aa16.55■□□□□ 0.24
CAPN9-201ENST00000271971 NUDCQ9Y266 331 aa16.55■□□□□ 0.24
CAPN9-201ENST00000271971 CADPS2Q86UW7 1296 aa16.53■□□□□ 0.24
CAPN9-201ENST00000271971 DDX17Q92841 729 aaKnown RBP16.53■□□□□ 0.24
CAPN9-201ENST00000271971 RUNDC1Q96C34 613 aa16.53■□□□□ 0.24
CAPN9-201ENST00000271971 RRP7AQ9Y3A4 280 aaKnown RBP16.53■□□□□ 0.24
CAPN9-201ENST00000271971 FKBP8Q14318 412 aa16.52■□□□□ 0.24
CAPN9-201ENST00000271971 RBM19Q9Y4C8 960 aaKnown RBP16.52■□□□□ 0.24
CAPN9-201ENST00000271971 LTN1O94822 1766 aa16.52■□□□□ 0.24
CAPN9-201ENST00000271971 MAP3K19Q56UN5 1328 aa16.52■□□□□ 0.23
CAPN9-201ENST00000271971 ZNF521Q96K83 1311 aa16.51■□□□□ 0.23
CAPN9-201ENST00000271971 PLEKHG5O94827 1062 aa16.51■□□□□ 0.23
CAPN9-201ENST00000271971 NEUROD2Q15784 382 aa16.51■□□□□ 0.23
CAPN9-201ENST00000271971 IL13P35225 146 aa16.5■□□□□ 0.23
CAPN9-201ENST00000271971 TCP11L2Q8N4U5 519 aa16.5■□□□□ 0.23
CAPN9-201ENST00000271971 NEFLP07196 543 aa16.49■□□□□ 0.23
CAPN9-201ENST00000271971 HMOX1P09601 288 aa16.49■□□□□ 0.23
CAPN9-201ENST00000271971 HSP90AB2PQ58FF8 381 aa16.49■□□□□ 0.23
CAPN9-201ENST00000271971 KRT28Q7Z3Y7 464 aa16.49■□□□□ 0.23
CAPN9-201ENST00000271971 ALS2Q96Q42 1657 aa16.49■□□□□ 0.23
CAPN9-201ENST00000271971 PDE3BQ13370 1112 aa16.49■□□□□ 0.23
CAPN9-201ENST00000271971 LMOD2Q6P5Q4 547 aa16.49■□□□□ 0.23
CAPN9-201ENST00000271971 PLEKHF1Q96S99 279 aa16.49■□□□□ 0.23
CAPN9-201ENST00000271971 DMRT2Q9Y5R5 561 aa16.49■□□□□ 0.23
CAPN9-201ENST00000271971 NFAT5O94916 1531 aa16.48■□□□□ 0.23
CAPN9-201ENST00000271971 EIF4A2Q14240 407 aaKnown RBP16.48■□□□□ 0.23
CAPN9-201ENST00000271971 SBNO1A3KN83 1393 aa16.47■□□□□ 0.23
CAPN9-201ENST00000271971 RGPD1P0DJD0 1748 aa16.47■□□□□ 0.23
CAPN9-201ENST00000271971 FLT4P35916 1363 aa16.46■□□□□ 0.23
CAPN9-201ENST00000271971 RSPH6AQ9H0K4 717 aa16.46■□□□□ 0.23
CAPN9-201ENST00000271971 PRKAR2BP31323 418 aa16.45■□□□□ 0.22
CAPN9-201ENST00000271971 AMPHP49418 695 aa16.45■□□□□ 0.22
CAPN9-201ENST00000271971 SPINK5Q9NQ38 1064 aaPredicted RBP16.45■□□□□ 0.22
CAPN9-201ENST00000271971 MAPK8IP3Q9UPT6 1336 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms