RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 NCBP3Q53F19 620 aaKnown RBP20.12■□□□□ 0.81
SF3B4-201ENST00000271628 XRN1Q8IZH2 1706 aaKnown RBP20.12■□□□□ 0.81
SF3B4-201ENST00000271628 PLEKHG3A1L390 1219 aa20.12■□□□□ 0.81
SF3B4-201ENST00000271628 RRP1P56182 461 aaKnown RBP20.11■□□□□ 0.81
SF3B4-201ENST00000271628 DUSP27Q5VZP5 1158 aa20.11■□□□□ 0.81
SF3B4-201ENST00000271628 TOPAZ1Q8N9V7 1692 aa20.1■□□□□ 0.81
SF3B4-201ENST00000271628 PNPLA6Q8IY17 1366 aa20.1■□□□□ 0.81
SF3B4-201ENST00000271628 U2AF1L5P0DN76 240 aaPredicted RBP20.1■□□□□ 0.81
SF3B4-201ENST00000271628 U2AF1Q01081 240 aaKnown RBP eCLIP20.1■□□□□ 0.81
SF3B4-201ENST00000271628 SLFN5Q08AF3 891 aa20.1■□□□□ 0.81
SF3B4-201ENST00000271628 NCKAP5LQ9HCH0 1330 aa20.1■□□□□ 0.81
SF3B4-201ENST00000271628 COL3A1P02461 1466 aaPredicted RBP20.08■□□□□ 0.81
SF3B4-201ENST00000271628 E9PSI1 815 aa20.08■□□□□ 0.81
SF3B4-201ENST00000271628 TRMT2AQ8IZ69 625 aaKnown RBP20.08■□□□□ 0.81
SF3B4-201ENST00000271628 COG3Q96JB2 828 aa20.07■□□□□ 0.8
SF3B4-201ENST00000271628 PNNQ9H307 717 aaKnown RBP20.07■□□□□ 0.8
SF3B4-201ENST00000271628 DIAPH1O60610 1272 aaKnown RBP20.07■□□□□ 0.8
SF3B4-201ENST00000271628 TCP11L2Q8N4U5 519 aa20.07■□□□□ 0.8
SF3B4-201ENST00000271628 AATKQ6ZMQ8 1374 aa20.07■□□□□ 0.8
SF3B4-201ENST00000271628 ACEP12821 1306 aa20.06■□□□□ 0.8
SF3B4-201ENST00000271628 KCNA6P17658 529 aa20.06■□□□□ 0.8
SF3B4-201ENST00000271628 CCDC27Q2M243 656 aa20.06■□□□□ 0.8
SF3B4-201ENST00000271628 NME9Q86XW9 330 aa20.06■□□□□ 0.8
SF3B4-201ENST00000271628 WWC1Q8IX03 1113 aa20.06■□□□□ 0.8
SF3B4-201ENST00000271628 POLKQ9UBT6 870 aa20.06■□□□□ 0.8
SF3B4-201ENST00000271628 IQSEC2Q5JU85 1478 aa20.05■□□□□ 0.8
SF3B4-201ENST00000271628 MAP2P11137 1827 aaKnown RBP20.05■□□□□ 0.8
SF3B4-201ENST00000271628 CHD2O14647 1828 aaKnown RBP20.04■□□□□ 0.8
SF3B4-201ENST00000271628 FANCIQ9NVI1 1328 aa20.04■□□□□ 0.8
SF3B4-201ENST00000271628 U2SURPO15042 1029 aaKnown RBP20.04■□□□□ 0.8
SF3B4-201ENST00000271628 NUTM2FA1L443 756 aa20.03■□□□□ 0.8
SF3B4-201ENST00000271628 WDR63Q8IWG1 891 aa20.03■□□□□ 0.8
SF3B4-201ENST00000271628 PHF23Q9BUL5 403 aaPredicted RBP20.03■□□□□ 0.8
SF3B4-201ENST00000271628 TTC21BQ7Z4L5 1316 aa20.02■□□□□ 0.8
SF3B4-201ENST00000271628 NKTRP30414 1462 aaKnown RBP20.02■□□□□ 0.8
SF3B4-201ENST00000271628 USP6P35125 1406 aa20.02■□□□□ 0.8
SF3B4-201ENST00000271628 NRKQ7Z2Y5 1582 aa20.02■□□□□ 0.79
SF3B4-201ENST00000271628 ANKARQ7Z5J8 1434 aa20.01■□□□□ 0.79
SF3B4-201ENST00000271628 NEUROD2Q15784 382 aa20■□□□□ 0.79
SF3B4-201ENST00000271628 PPM1GO15355 546 aaPredicted RBP19.99■□□□□ 0.79
SF3B4-201ENST00000271628 PLEKHF1Q96S99 279 aa19.99■□□□□ 0.79
SF3B4-201ENST00000271628 MAPK8IP3Q9UPT6 1336 aa19.99■□□□□ 0.79
SF3B4-201ENST00000271628 SPINK5Q9NQ38 1064 aaPredicted RBP19.99■□□□□ 0.79
SF3B4-201ENST00000271628 TTC21AQ8NDW8 1320 aa19.99■□□□□ 0.79
SF3B4-201ENST00000271628 FCHSD2O94868 740 aa19.98■□□□□ 0.79
SF3B4-201ENST00000271628 CDK12Q9NYV4 1490 aaPredicted RBP19.98■□□□□ 0.79
SF3B4-201ENST00000271628 NPHP4O75161 1426 aaPredicted RBP19.98■□□□□ 0.79
SF3B4-201ENST00000271628 B4GALNT3Q6L9W6 998 aa19.98■□□□□ 0.79
SF3B4-201ENST00000271628 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.98■□□□□ 0.79
SF3B4-201ENST00000271628 ZRANB1Q9UGI0 708 aa19.98■□□□□ 0.79
SF3B4-201ENST00000271628 RRP7AQ9Y3A4 280 aaKnown RBP19.98■□□□□ 0.79
SF3B4-201ENST00000271628 SSH2Q76I76 1423 aa19.97■□□□□ 0.79
SF3B4-201ENST00000271628 NGDNQ8NEJ9 315 aaKnown RBP19.96■□□□□ 0.79
SF3B4-201ENST00000271628 RGPD8O14715 1765 aaPredicted RBP19.96■□□□□ 0.79
SF3B4-201ENST00000271628 NEFMP07197 916 aa19.96■□□□□ 0.79
SF3B4-201ENST00000271628 FBLN1P23142 703 aa19.96■□□□□ 0.79
SF3B4-201ENST00000271628 CCDC136Q96JN2 1154 aa19.96■□□□□ 0.79
SF3B4-201ENST00000271628 EMILIN1Q9Y6C2 1016 aa19.96■□□□□ 0.79
SF3B4-201ENST00000271628 FMN2Q9NZ56 1722 aa19.96■□□□□ 0.79
SF3B4-201ENST00000271628 PMFBP1Q8TBY8 1022 aa19.95■□□□□ 0.78
SF3B4-201ENST00000271628 OVOS2A0A0J9YW53 1432 aa19.95■□□□□ 0.78
SF3B4-201ENST00000271628 OVOS2Q6IE36 1432 aa19.95■□□□□ 0.78
SF3B4-201ENST00000271628 TMPOP42166 694 aaKnown RBP19.94■□□□□ 0.78
SF3B4-201ENST00000271628 DMRT2Q9Y5R5 561 aa19.94■□□□□ 0.78
SF3B4-201ENST00000271628 IL13P35225 146 aa19.93■□□□□ 0.78
SF3B4-201ENST00000271628 MYH16Q9H6N6 1097 aa19.92■□□□□ 0.78
SF3B4-201ENST00000271628 USP31Q70CQ4 1352 aa19.91■□□□□ 0.78
SF3B4-201ENST00000271628 PLIN1O60240 522 aa19.91■□□□□ 0.78
SF3B4-201ENST00000271628 RRS1Q15050 365 aaKnown RBP19.91■□□□□ 0.78
SF3B4-201ENST00000271628 NALCNQ8IZF0 1738 aa19.91■□□□□ 0.78
SF3B4-201ENST00000271628 EXOC6Q8TAG9 804 aa19.9■□□□□ 0.78
SF3B4-201ENST00000271628 RSPH6AQ9H0K4 717 aa19.9■□□□□ 0.78
SF3B4-201ENST00000271628 RIPK4P57078 832 aa19.88■□□□□ 0.77
SF3B4-201ENST00000271628 LRRC7Q96NW7 1537 aa19.88■□□□□ 0.77
SF3B4-201ENST00000271628 ADGRL3Q9HAR2 1447 aa19.88■□□□□ 0.77
SF3B4-201ENST00000271628 IL16Q14005 1332 aa19.87■□□□□ 0.77
SF3B4-201ENST00000271628 MSH5O43196 834 aa19.87■□□□□ 0.77
SF3B4-201ENST00000271628 PRKAR2BP31323 418 aa19.87■□□□□ 0.77
SF3B4-201ENST00000271628 TRIM35Q9UPQ4 493 aa19.87■□□□□ 0.77
SF3B4-201ENST00000271628 NWD1Q149M9 1564 aa19.85■□□□□ 0.77
SF3B4-201ENST00000271628 PHF8Q9UPP1 1060 aa19.85■□□□□ 0.77
SF3B4-201ENST00000271628 HMOX1P09601 288 aa19.84■□□□□ 0.77
SF3B4-201ENST00000271628 CT47B1P0C2W7 299 aaPredicted RBP19.84■□□□□ 0.77
SF3B4-201ENST00000271628 CRBNQ96SW2 442 aa19.83■□□□□ 0.76
SF3B4-201ENST00000271628 NFE2L2Q16236 605 aa19.82■□□□□ 0.76
SF3B4-201ENST00000271628 C14orf37Q86TY3 774 aa19.82■□□□□ 0.76
SF3B4-201ENST00000271628 PIK3C2AO00443 1686 aa19.82■□□□□ 0.76
SF3B4-201ENST00000271628 BCAR3O75815 825 aa19.82■□□□□ 0.76
SF3B4-201ENST00000271628 NLRP6P59044 892 aa19.81■□□□□ 0.76
SF3B4-201ENST00000271628 CALD1Q05682 793 aaKnown RBP19.81■□□□□ 0.76
SF3B4-201ENST00000271628 EIF4A2Q14240 407 aaKnown RBP19.81■□□□□ 0.76
SF3B4-201ENST00000271628 C20orf194Q5TEA3 1177 aa19.8■□□□□ 0.76
SF3B4-201ENST00000271628 USP54Q70EL1 1684 aa19.8■□□□□ 0.76
SF3B4-201ENST00000271628 RBM33Q96EV2 1170 aaKnown RBP19.8■□□□□ 0.76
SF3B4-201ENST00000271628 SBNO1A3KN83 1393 aa19.79■□□□□ 0.76
SF3B4-201ENST00000271628 RARSP54136 660 aaKnown RBP19.79■□□□□ 0.76
SF3B4-201ENST00000271628 LMOD3Q0VAK6 560 aa19.79■□□□□ 0.76
SF3B4-201ENST00000271628 PDE3AQ14432 1141 aa19.79■□□□□ 0.76
SF3B4-201ENST00000271628 ABTB2Q8N961 1025 aa19.79■□□□□ 0.76
SF3B4-201ENST00000271628 PHACTR3Q96KR7 559 aa19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 123.3 ms