RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 KIF1AQ12756 1690 aa14.05□□□□□ -0.16
VPS41-201ENST00000265745 SIN3AQ96ST3 1273 aa14.05□□□□□ -0.16
VPS41-201ENST00000265745 CCDC61Q9Y6R9 512 aa14.04□□□□□ -0.16
VPS41-201ENST00000265745 TULP4Q9NRJ4 1543 aa14.04□□□□□ -0.16
VPS41-201ENST00000265745 PAK3O75914 559 aaPredicted RBP14.03□□□□□ -0.16
VPS41-201ENST00000265745 VPS72Q15906 364 aa14.03□□□□□ -0.16
VPS41-201ENST00000265745 ATAD2Q6PL18 1390 aa14.03□□□□□ -0.16
VPS41-201ENST00000265745 PLEKHG3A1L390 1219 aa14.02□□□□□ -0.17
VPS41-201ENST00000265745 USP32Q8NFA0 1604 aa14.01□□□□□ -0.17
VPS41-201ENST00000265745 ONECUT3O60422 494 aaPredicted RBP14.01□□□□□ -0.17
VPS41-201ENST00000265745 NEUROD1Q13562 356 aa14.01□□□□□ -0.17
VPS41-201ENST00000265745 NBPF8Q3BBV2 869 aa14.01□□□□□ -0.17
VPS41-201ENST00000265745 RALGAPBQ86X10 1494 aa14□□□□□ -0.17
VPS41-201ENST00000265745 ATP7BP35670 1465 aa13.99□□□□□ -0.17
VPS41-201ENST00000265745 ACEP12821 1306 aa13.99□□□□□ -0.17
VPS41-201ENST00000265745 CENPJQ9HC77 1338 aaPredicted RBP13.99□□□□□ -0.17
VPS41-201ENST00000265745 SEPT12Q8IYM1 358 aa13.99□□□□□ -0.17
VPS41-201ENST00000265745 BTG4Q9NY30 223 aa13.99□□□□□ -0.17
VPS41-201ENST00000265745 CCDC9Q9Y3X0 531 aaKnown RBP13.99□□□□□ -0.17
VPS41-201ENST00000265745 POLR3AO14802 1390 aaPredicted RBP13.98□□□□□ -0.17
VPS41-201ENST00000265745 SRPK2P78362 688 aaKnown RBP13.98□□□□□ -0.17
VPS41-201ENST00000265745 CCDC125Q86Z20 511 aa13.98□□□□□ -0.17
VPS41-201ENST00000265745 CABP2Q9NPB3 220 aa13.98□□□□□ -0.17
VPS41-201ENST00000265745 RGPD8O14715 1765 aaPredicted RBP13.96□□□□□ -0.17
VPS41-201ENST00000265745 PRDM11Q9NQV5 511 aa13.96□□□□□ -0.17
VPS41-201ENST00000265745 ZNF219Q9P2Y4 722 aaPredicted RBP13.96□□□□□ -0.17
VPS41-201ENST00000265745 NUTM2GQ5VZR2 741 aa13.95□□□□□ -0.18
VPS41-201ENST00000265745 ABTB2Q8N961 1025 aa13.94□□□□□ -0.18
VPS41-201ENST00000265745 CABP1Q9NZU7 370 aa13.94□□□□□ -0.18
VPS41-201ENST00000265745 ARHGEF28Q8N1W1 1705 aaKnown RBP13.93□□□□□ -0.18
VPS41-201ENST00000265745 GLI3P10071 1580 aa13.93□□□□□ -0.18
VPS41-201ENST00000265745 ZC3H6P61129 1189 aaKnown RBP13.93□□□□□ -0.18
VPS41-201ENST00000265745 FAM98CQ17RN3 349 aaKnown RBP13.93□□□□□ -0.18
VPS41-201ENST00000265745 KRT27Q7Z3Y8 459 aa13.93□□□□□ -0.18
VPS41-201ENST00000265745 SPATA31A5Q5VU36 1347 aa13.92□□□□□ -0.18
VPS41-201ENST00000265745 SPATA31A7Q8IWB4 1347 aa13.92□□□□□ -0.18
VPS41-201ENST00000265745 CHRNA2Q15822 529 aa13.92□□□□□ -0.18
VPS41-201ENST00000265745 ROCK2O75116 1388 aaKnown RBP13.92□□□□□ -0.18
VPS41-201ENST00000265745 KIAA0232Q92628 1395 aa13.92□□□□□ -0.18
VPS41-201ENST00000265745 TRPM3Q9HCF6 1732 aaPredicted RBP13.92□□□□□ -0.18
VPS41-201ENST00000265745 KIAA1210Q9ULL0 1709 aa13.92□□□□□ -0.18
VPS41-201ENST00000265745 PPIP5K1Q6PFW1 1433 aa13.91□□□□□ -0.18
VPS41-201ENST00000265745 EVC2Q86UK5 1308 aa13.9□□□□□ -0.18
VPS41-201ENST00000265745 MARF1Q9Y4F3 1742 aaKnown RBP13.9□□□□□ -0.18
VPS41-201ENST00000265745 NLRP13Q86W25 1043 aa13.9□□□□□ -0.18
VPS41-201ENST00000265745 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.9□□□□□ -0.18
VPS41-201ENST00000265745 USP19O94966 1318 aa13.9□□□□□ -0.19
VPS41-201ENST00000265745 ALS2Q96Q42 1657 aa13.89□□□□□ -0.19
VPS41-201ENST00000265745 BRD4O60885 1362 aaPredicted RBP13.89□□□□□ -0.19
VPS41-201ENST00000265745 A0A0G2JS52 829 aa13.89□□□□□ -0.19
VPS41-201ENST00000265745 GCP02774 474 aa13.89□□□□□ -0.19
VPS41-201ENST00000265745 MYT1Q01538 1121 aa13.89□□□□□ -0.19
VPS41-201ENST00000265745 BLMP54132 1417 aaPredicted RBP13.89□□□□□ -0.19
VPS41-201ENST00000265745 STRN4Q9NRL3 753 aa13.88□□□□□ -0.19
VPS41-201ENST00000265745 ZRANB1Q9UGI0 708 aa13.88□□□□□ -0.19
VPS41-201ENST00000265745 EP400Q96L91 3159 aa13.88□□□□□ -0.19
VPS41-201ENST00000265745 SPATA31A1Q5TZJ5 1347 aa13.88□□□□□ -0.19
VPS41-201ENST00000265745 EVA1CP58658 441 aa13.87□□□□□ -0.19
VPS41-201ENST00000265745 TRIM26Q12899 539 aaPredicted RBP13.87□□□□□ -0.19
VPS41-201ENST00000265745 DEFB132Q7Z7B7 95 aa13.87□□□□□ -0.19
VPS41-201ENST00000265745 CPDO75976 1380 aa13.86□□□□□ -0.19
VPS41-201ENST00000265745 NLRP6P59044 892 aa13.86□□□□□ -0.19
VPS41-201ENST00000265745 SF3B2Q13435 895 aaKnown RBP13.86□□□□□ -0.19
VPS41-201ENST00000265745 ZNF692Q9BU19 519 aaPredicted RBP13.86□□□□□ -0.19
VPS41-201ENST00000265745 CARD11Q9BXL7 1154 aa13.86□□□□□ -0.19
VPS41-201ENST00000265745 NWD2Q9ULI1 1742 aa13.85□□□□□ -0.19
VPS41-201ENST00000265745 USP6P35125 1406 aa13.85□□□□□ -0.19
VPS41-201ENST00000265745 SSH2Q76I76 1423 aa13.85□□□□□ -0.19
VPS41-201ENST00000265745 ABCA3Q99758 1704 aa13.84□□□□□ -0.19
VPS41-201ENST00000265745 FAM182BQ5T319 152 aa13.84□□□□□ -0.19
VPS41-201ENST00000265745 LARP1Q6PKG0 1096 aaKnown RBP13.84□□□□□ -0.19
VPS41-201ENST00000265745 BARGINQ6ZT62 677 aa13.84□□□□□ -0.19
VPS41-201ENST00000265745 USP35Q9P2H5 1018 aa13.84□□□□□ -0.19
VPS41-201ENST00000265745 COL14A1Q05707 1796 aaKnown RBP13.83□□□□□ -0.19
VPS41-201ENST00000265745 SRCAPQ6ZRS2 3230 aa13.83□□□□□ -0.19
VPS41-201ENST00000265745 PLCH1Q4KWH8 1693 aa13.83□□□□□ -0.2
VPS41-201ENST00000265745 TTC21BQ7Z4L5 1316 aa13.83□□□□□ -0.2
VPS41-201ENST00000265745 TONSLQ96HA7 1378 aa13.83□□□□□ -0.2
VPS41-201ENST00000265745 TOPAZ1Q8N9V7 1692 aa13.82□□□□□ -0.2
VPS41-201ENST00000265745 TCP11L2Q8N4U5 519 aa13.82□□□□□ -0.2
VPS41-201ENST00000265745 SBNO2Q9Y2G9 1366 aa13.82□□□□□ -0.2
VPS41-201ENST00000265745 ITSN1Q15811 1721 aa13.81□□□□□ -0.2
VPS41-201ENST00000265745 TRPM1Q7Z4N2 1603 aa13.8□□□□□ -0.2
VPS41-201ENST00000265745 CAMTA1Q9Y6Y1 1673 aa13.8□□□□□ -0.2
VPS41-201ENST00000265745 FAM196AQ6ZSG2 479 aa13.8□□□□□ -0.2
VPS41-201ENST00000265745 AATKQ6ZMQ8 1374 aa13.8□□□□□ -0.2
VPS41-201ENST00000265745 NRAPQ86VF7 1730 aa13.79□□□□□ -0.2
VPS41-201ENST00000265745 CRYBG1Q9Y4K1 1723 aa13.79□□□□□ -0.2
VPS41-201ENST00000265745 BAG6P46379 1132 aa13.79□□□□□ -0.2
VPS41-201ENST00000265745 ARHGEF25Q86VW2 580 aa13.79□□□□□ -0.2
VPS41-201ENST00000265745 THRAP3Q9Y2W1 955 aaKnown RBP13.79□□□□□ -0.2
VPS41-201ENST00000265745 TTC21AQ8NDW8 1320 aa13.79□□□□□ -0.2
VPS41-201ENST00000265745 CPSF1Q10570 1443 aaKnown RBP13.79□□□□□ -0.2
VPS41-201ENST00000265745 ZBTB7CA1YPR0 619 aa13.78□□□□□ -0.2
VPS41-201ENST00000265745 PDE3BQ13370 1112 aa13.78□□□□□ -0.2
VPS41-201ENST00000265745 KCNH5Q8NCM2 988 aa13.78□□□□□ -0.2
VPS41-201ENST00000265745 AXIN2Q9Y2T1 843 aa13.78□□□□□ -0.2
VPS41-201ENST00000265745 EN1Q05925 392 aaPredicted RBP13.77□□□□□ -0.21
VPS41-201ENST00000265745 KTN1Q86UP2 1357 aaKnown RBP13.77□□□□□ -0.21
VPS41-201ENST00000265745 PUS7Q96PZ0 661 aaKnown RBP13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms