RNA–Protein interactions for RNA: ENST00000262643.7

CCNE1-201, Transcript of cyclin E1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCNE1, Length 2,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNE1-201ENST00000262643 ST20-MTHFSA0A0A6YYL1 179 aa29.95■■■□□ 2.39
CCNE1-201ENST00000262643 USP21Q9UK80 565 aa29.95■■■□□ 2.39
CCNE1-201ENST00000262643 ABCA3Q99758 1704 aa29.94■■■□□ 2.38
CCNE1-201ENST00000262643 FNBP4Q8N3X1 1017 aaPredicted RBP29.93■■■□□ 2.38
CCNE1-201ENST00000262643 QTRT2Q9H974 415 aaKnown RBP29.93■■■□□ 2.38
CCNE1-201ENST00000262643 NUTM2GQ5VZR2 741 aa29.92■■■□□ 2.38
CCNE1-201ENST00000262643 ATAD2Q6PL18 1390 aa29.91■■■□□ 2.38
CCNE1-201ENST00000262643 RXRBP28702 533 aa29.91■■■□□ 2.38
CCNE1-201ENST00000262643 USP47Q96K76 1375 aa29.9■■■□□ 2.38
CCNE1-201ENST00000262643 TESK2Q96S53 571 aa29.88■■■□□ 2.37
CCNE1-201ENST00000262643 ABTB2Q8N961 1025 aa29.88■■■□□ 2.37
CCNE1-201ENST00000262643 USP6P35125 1406 aa29.86■■■□□ 2.37
CCNE1-201ENST00000262643 BCL9LQ86UU0 1499 aa29.85■■■□□ 2.37
CCNE1-201ENST00000262643 ZNF316A6NFI3 1004 aaPredicted RBP29.85■■■□□ 2.37
CCNE1-201ENST00000262643 TRPC5Q9UL62 973 aaPredicted RBP29.85■■■□□ 2.37
CCNE1-201ENST00000262643 TMC1Q8TDI8 760 aa29.84■■■□□ 2.37
CCNE1-201ENST00000262643 CRYBG1Q9Y4K1 1723 aa29.84■■■□□ 2.37
CCNE1-201ENST00000262643 RBM6P78332 1123 aaKnown RBP29.83■■■□□ 2.37
CCNE1-201ENST00000262643 FAM83GA6ND36 823 aa29.82■■■□□ 2.36
CCNE1-201ENST00000262643 SLIT2O94813 1529 aa29.82■■■□□ 2.36
CCNE1-201ENST00000262643 ZNF692Q9BU19 519 aaPredicted RBP29.81■■■□□ 2.36
CCNE1-201ENST00000262643 BRD4O60885 1362 aaPredicted RBP29.8■■■□□ 2.36
CCNE1-201ENST00000262643 ATRNO75882 1429 aa29.8■■■□□ 2.36
CCNE1-201ENST00000262643 AKAP12Q02952 1782 aa29.8■■■□□ 2.36
CCNE1-201ENST00000262643 UNC5CLQ8IV45 518 aa29.79■■■□□ 2.36
CCNE1-201ENST00000262643 PLCH1Q4KWH8 1693 aa29.79■■■□□ 2.36
CCNE1-201ENST00000262643 PHRF1Q9P1Y6 1649 aaKnown RBP29.78■■■□□ 2.36
CCNE1-201ENST00000262643 SLC24A1O60721 1099 aa29.78■■■□□ 2.36
CCNE1-201ENST00000262643 SLC12A5Q9H2X9 1139 aa29.78■■■□□ 2.36
CCNE1-201ENST00000262643 CPSF1Q10570 1443 aaKnown RBP29.77■■■□□ 2.36
CCNE1-201ENST00000262643 KTN1Q86UP2 1357 aaKnown RBP29.77■■■□□ 2.36
CCNE1-201ENST00000262643 NLRP13Q86W25 1043 aa29.77■■■□□ 2.36
CCNE1-201ENST00000262643 SSH2Q76I76 1423 aa29.76■■■□□ 2.35
CCNE1-201ENST00000262643 PRDM11Q9NQV5 511 aa29.76■■■□□ 2.35
CCNE1-201ENST00000262643 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.75■■■□□ 2.35
CCNE1-201ENST00000262643 NLRP6P59044 892 aa29.75■■■□□ 2.35
CCNE1-201ENST00000262643 ZC3H6P61129 1189 aaKnown RBP29.75■■■□□ 2.35
CCNE1-201ENST00000262643 TMF1P82094 1093 aa29.75■■■□□ 2.35
CCNE1-201ENST00000262643 PUS7Q96PZ0 661 aaKnown RBP29.75■■■□□ 2.35
CCNE1-201ENST00000262643 KIAA0232Q92628 1395 aa29.74■■■□□ 2.35
CCNE1-201ENST00000262643 TTC21BQ7Z4L5 1316 aa29.74■■■□□ 2.35
CCNE1-201ENST00000262643 NWD2Q9ULI1 1742 aa29.73■■■□□ 2.35
CCNE1-201ENST00000262643 CDK12Q9NYV4 1490 aaPredicted RBP29.73■■■□□ 2.35
CCNE1-201ENST00000262643 BTG4Q9NY30 223 aa29.73■■■□□ 2.35
CCNE1-201ENST00000262643 RGS12O14924 1447 aa29.73■■■□□ 2.35
CCNE1-201ENST00000262643 GJD4Q96KN9 370 aaPredicted RBP29.72■■■□□ 2.35
CCNE1-201ENST00000262643 USP19O94966 1318 aa29.72■■■□□ 2.35
CCNE1-201ENST00000262643 COL14A1Q05707 1796 aaKnown RBP29.72■■■□□ 2.35
CCNE1-201ENST00000262643 CD163L1Q9NR16 1453 aa29.72■■■□□ 2.35
CCNE1-201ENST00000262643 PIK3C2AO00443 1686 aa29.71■■■□□ 2.35
CCNE1-201ENST00000262643 CHRNA2Q15822 529 aa29.71■■■□□ 2.35
CCNE1-201ENST00000262643 HDGFL2Q7Z4V5 671 aaPredicted RBP29.71■■■□□ 2.35
CCNE1-201ENST00000262643 NRKQ7Z2Y5 1582 aa29.71■■■□□ 2.35
CCNE1-201ENST00000262643 MON2Q7Z3U7 1717 aa29.71■■■□□ 2.35
CCNE1-201ENST00000262643 GCP02774 474 aa29.69■■■□□ 2.34
CCNE1-201ENST00000262643 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.69■■■□□ 2.34
CCNE1-201ENST00000262643 CCDC9Q9Y3X0 531 aaKnown RBP29.69■■■□□ 2.34
CCNE1-201ENST00000262643 TERF2IPQ9NYB0 399 aa29.69■■■□□ 2.34
CCNE1-201ENST00000262643 TTC21AQ8NDW8 1320 aa29.68■■■□□ 2.34
CCNE1-201ENST00000262643 A0A1W2PP64 1363 aa29.67■■■□□ 2.34
CCNE1-201ENST00000262643 VPS72Q15906 364 aa29.67■■■□□ 2.34
CCNE1-201ENST00000262643 NRAPQ86VF7 1730 aa29.65■■■□□ 2.34
CCNE1-201ENST00000262643 NINLQ9Y2I6 1382 aa29.65■■■□□ 2.34
CCNE1-201ENST00000262643 GLI3P10071 1580 aa29.64■■■□□ 2.34
CCNE1-201ENST00000262643 ZBTB7CA1YPR0 619 aa29.63■■■□□ 2.33
CCNE1-201ENST00000262643 CDCA8Q53HL2 280 aa29.63■■■□□ 2.33
CCNE1-201ENST00000262643 SOX12O15370 315 aa29.62■■■□□ 2.33
CCNE1-201ENST00000262643 EIF4G2P78344 907 aaKnown RBP eCLIP29.62■■■□□ 2.33
CCNE1-201ENST00000262643 CPDO75976 1380 aa29.62■■■□□ 2.33
CCNE1-201ENST00000262643 SLIT3O75094 1523 aa29.62■■■□□ 2.33
CCNE1-201ENST00000262643 ZRANB1Q9UGI0 708 aa29.61■■■□□ 2.33
CCNE1-201ENST00000262643 NME9Q86XW9 330 aa29.61■■■□□ 2.33
CCNE1-201ENST00000262643 STRN4Q9NRL3 753 aa29.61■■■□□ 2.33
CCNE1-201ENST00000262643 EDC4Q6P2E9 1401 aaKnown RBP29.6■■■□□ 2.33
CCNE1-201ENST00000262643 HSPA5P11021 654 aaKnown RBP29.6■■■□□ 2.33
CCNE1-201ENST00000262643 DIEXFQ68CQ4 756 aaKnown RBP29.56■■■□□ 2.32
CCNE1-201ENST00000262643 ANKRD36BQ8N2N9 1353 aa29.56■■■□□ 2.32
CCNE1-201ENST00000262643 EVA1CP58658 441 aa29.55■■■□□ 2.32
CCNE1-201ENST00000262643 KCNH5Q8NCM2 988 aa29.55■■■□□ 2.32
CCNE1-201ENST00000262643 CAMTA1Q9Y6Y1 1673 aa29.55■■■□□ 2.32
CCNE1-201ENST00000262643 POLR3GLQ9BT43 218 aa29.54■■■□□ 2.32
CCNE1-201ENST00000262643 LMO7Q8WWI1 1683 aa29.53■■■□□ 2.32
CCNE1-201ENST00000262643 USP31Q70CQ4 1352 aa29.52■■■□□ 2.32
CCNE1-201ENST00000262643 SPATA31A5Q5VU36 1347 aa29.52■■■□□ 2.32
CCNE1-201ENST00000262643 SPATA31A7Q8IWB4 1347 aa29.52■■■□□ 2.32
CCNE1-201ENST00000262643 A0A0G2JS52 829 aa29.52■■■□□ 2.32
CCNE1-201ENST00000262643 MYT1Q01538 1121 aa29.52■■■□□ 2.32
CCNE1-201ENST00000262643 FAM98CQ17RN3 349 aaKnown RBP29.52■■■□□ 2.32
CCNE1-201ENST00000262643 SEPT12Q8IYM1 358 aa29.52■■■□□ 2.32
CCNE1-201ENST00000262643 EP400Q96L91 3159 aa29.51■■■□□ 2.31
CCNE1-201ENST00000262643 UPF1Q92900 1129 aaKnown RBP eCLIP29.49■■■□□ 2.31
CCNE1-201ENST00000262643 USP35Q9P2H5 1018 aa29.49■■■□□ 2.31
CCNE1-201ENST00000262643 AATKQ6ZMQ8 1374 aa29.49■■■□□ 2.31
CCNE1-201ENST00000262643 MYOM1P52179 1685 aa29.49■■■□□ 2.31
CCNE1-201ENST00000262643 ARHGEF25Q86VW2 580 aa29.49■■■□□ 2.31
CCNE1-201ENST00000262643 NFAT5O94916 1531 aa29.48■■■□□ 2.31
CCNE1-201ENST00000262643 LARP1Q6PKG0 1096 aaKnown RBP29.48■■■□□ 2.31
CCNE1-201ENST00000262643 USP54Q70EL1 1684 aa29.48■■■□□ 2.31
CCNE1-201ENST00000262643 ONECUT3O60422 494 aaPredicted RBP29.47■■■□□ 2.31
CCNE1-201ENST00000262643 SPATA31A1Q5TZJ5 1347 aa29.47■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms