RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 PDE3AQ14432 1141 aa12.88□□□□□ -0.35
LIG3-201ENST00000262327 U2AF1L5P0DN76 240 aaPredicted RBP12.88□□□□□ -0.35
LIG3-201ENST00000262327 U2AF1Q01081 240 aaKnown RBP eCLIP12.88□□□□□ -0.35
LIG3-201ENST00000262327 RUNDC1Q96C34 613 aa12.88□□□□□ -0.35
LIG3-201ENST00000262327 THEMISQ8N1K5 641 aaPredicted RBP12.87□□□□□ -0.35
LIG3-201ENST00000262327 TSR2Q969E8 191 aaKnown RBP12.87□□□□□ -0.35
LIG3-201ENST00000262327 CABP2Q9NPB3 220 aa12.87□□□□□ -0.35
LIG3-201ENST00000262327 PDZRN3Q9UPQ7 1066 aa12.86□□□□□ -0.35
LIG3-201ENST00000262327 STK26Q9P289 416 aa12.86□□□□□ -0.35
LIG3-201ENST00000262327 PLEKHG1Q9ULL1 1385 aa12.86□□□□□ -0.35
LIG3-201ENST00000262327 EID1Q9Y6B2 187 aa12.85□□□□□ -0.35
LIG3-201ENST00000262327 CEP170BQ9Y4F5 1589 aaPredicted RBP12.85□□□□□ -0.35
LIG3-201ENST00000262327 YTHDC2Q9H6S0 1430 aaKnown RBP12.85□□□□□ -0.35
LIG3-201ENST00000262327 NRXN3Q9Y4C0 1643 aa12.85□□□□□ -0.35
LIG3-201ENST00000262327 SETD1AO15047 1707 aaKnown RBP12.85□□□□□ -0.35
LIG3-201ENST00000262327 U2SURPO15042 1029 aaKnown RBP12.85□□□□□ -0.35
LIG3-201ENST00000262327 POLR3AO14802 1390 aaPredicted RBP12.85□□□□□ -0.35
LIG3-201ENST00000262327 POGKQ9P215 609 aa12.85□□□□□ -0.35
LIG3-201ENST00000262327 ZNF142P52746 1687 aaPredicted RBP12.84□□□□□ -0.35
LIG3-201ENST00000262327 PTPRMP28827 1452 aa12.84□□□□□ -0.35
LIG3-201ENST00000262327 ARHGEF28Q8N1W1 1705 aaKnown RBP12.84□□□□□ -0.35
LIG3-201ENST00000262327 DLC1Q96QB1 1528 aa12.84□□□□□ -0.35
LIG3-201ENST00000262327 PLPPR3Q6T4P5 718 aa12.83□□□□□ -0.36
LIG3-201ENST00000262327 TXNDC2Q86VQ3 553 aa12.83□□□□□ -0.36
LIG3-201ENST00000262327 PUS7Q96PZ0 661 aaKnown RBP12.83□□□□□ -0.36
LIG3-201ENST00000262327 QRICH2Q9H0J4 1663 aa12.83□□□□□ -0.36
LIG3-201ENST00000262327 GGNBP2Q9H3C7 697 aa12.82□□□□□ -0.36
LIG3-201ENST00000262327 MAPK8IP3Q9UPT6 1336 aa12.82□□□□□ -0.36
LIG3-201ENST00000262327 ABCC11Q96J66 1382 aa12.82□□□□□ -0.36
LIG3-201ENST00000262327 SETD1BQ9UPS6 1966 aaKnown RBP12.82□□□□□ -0.36
LIG3-201ENST00000262327 CFAP53Q96M91 514 aa12.82□□□□□ -0.36
LIG3-201ENST00000262327 LTKP29376 864 aa12.81□□□□□ -0.36
LIG3-201ENST00000262327 FTSJ3Q8IY81 847 aaKnown RBP12.81□□□□□ -0.36
LIG3-201ENST00000262327 SIRT1Q96EB6 747 aa12.81□□□□□ -0.36
LIG3-201ENST00000262327 PMFBP1Q8TBY8 1022 aa12.81□□□□□ -0.36
LIG3-201ENST00000262327 MED14O60244 1454 aa12.81□□□□□ -0.36
LIG3-201ENST00000262327 ZMYND15Q9H091 742 aa12.8□□□□□ -0.36
LIG3-201ENST00000262327 ADAMTS13Q76LX8 1427 aa12.8□□□□□ -0.36
LIG3-201ENST00000262327 EXOSC9Q06265 439 aaKnown RBP12.8□□□□□ -0.36
LIG3-201ENST00000262327 SMC4Q9NTJ3 1288 aa12.8□□□□□ -0.36
LIG3-201ENST00000262327 DIP2AQ14689 1571 aa12.8□□□□□ -0.36
LIG3-201ENST00000262327 TECPR2O15040 1411 aa12.79□□□□□ -0.36
LIG3-201ENST00000262327 FBLN1P23142 703 aa12.79□□□□□ -0.36
LIG3-201ENST00000262327 BECN1Q14457 450 aa12.79□□□□□ -0.36
LIG3-201ENST00000262327 METP08581 1390 aa12.79□□□□□ -0.36
LIG3-201ENST00000262327 MFAP1P55081 439 aaKnown RBP12.79□□□□□ -0.36
LIG3-201ENST00000262327 SRPK2P78362 688 aaKnown RBP12.79□□□□□ -0.36
LIG3-201ENST00000262327 WDR63Q8IWG1 891 aa12.79□□□□□ -0.36
LIG3-201ENST00000262327 KNDC1Q76NI1 1749 aa12.79□□□□□ -0.36
LIG3-201ENST00000262327 ITPRIPQ8IWB1 547 aa12.78□□□□□ -0.36
LIG3-201ENST00000262327 NGEFQ8N5V2 710 aa12.78□□□□□ -0.36
LIG3-201ENST00000262327 TBC1D2Q9BYX2 928 aa12.78□□□□□ -0.36
LIG3-201ENST00000262327 UPF2Q9HAU5 1272 aaKnown RBP12.78□□□□□ -0.36
LIG3-201ENST00000262327 TBX22Q9Y458 520 aa12.78□□□□□ -0.36
LIG3-201ENST00000262327 EVC2Q86UK5 1308 aa12.78□□□□□ -0.36
LIG3-201ENST00000262327 RWDD1Q9H446 243 aaPredicted RBP12.78□□□□□ -0.36
LIG3-201ENST00000262327 PHF23Q9BUL5 403 aaPredicted RBP12.77□□□□□ -0.36
LIG3-201ENST00000262327 MYH16Q9H6N6 1097 aa12.77□□□□□ -0.36
LIG3-201ENST00000262327 FAM135BQ49AJ0 1406 aa12.77□□□□□ -0.36
LIG3-201ENST00000262327 MVPQ14764 893 aaKnown RBP12.77□□□□□ -0.37
LIG3-201ENST00000262327 DZIP1LQ8IYY4 767 aaKnown RBP12.77□□□□□ -0.37
LIG3-201ENST00000262327 VSIG10Q8N0Z9 540 aa12.77□□□□□ -0.37
LIG3-201ENST00000262327 GZF1Q9H116 711 aaPredicted RBP12.77□□□□□ -0.37
LIG3-201ENST00000262327 ZKSCAN2Q63HK3 967 aa12.77□□□□□ -0.37
LIG3-201ENST00000262327 PRAM1Q96QH2 718 aa12.77□□□□□ -0.37
LIG3-201ENST00000262327 MINK1Q8N4C8 1332 aaPredicted RBP12.76□□□□□ -0.37
LIG3-201ENST00000262327 SSH1Q8WYL5 1049 aa12.76□□□□□ -0.37
LIG3-201ENST00000262327 CPS1P31327 1500 aa12.76□□□□□ -0.37
LIG3-201ENST00000262327 ANKLE2Q86XL3 938 aa12.76□□□□□ -0.37
LIG3-201ENST00000262327 TBC1D32Q96NH3 1257 aa12.76□□□□□ -0.37
LIG3-201ENST00000262327 TRIM27P14373 513 aa12.75□□□□□ -0.37
LIG3-201ENST00000262327 TULP4Q9NRJ4 1543 aa12.75□□□□□ -0.37
LIG3-201ENST00000262327 SHPRHQ149N8 1683 aa12.75□□□□□ -0.37
LIG3-201ENST00000262327 GLIPR1L2Q4G1C9 344 aa12.75□□□□□ -0.37
LIG3-201ENST00000262327 NOB1Q9ULX3 412 aaKnown RBP12.75□□□□□ -0.37
LIG3-201ENST00000262327 NINLQ9Y2I6 1382 aa12.75□□□□□ -0.37
LIG3-201ENST00000262327 IQSEC2Q5JU85 1478 aa12.74□□□□□ -0.37
LIG3-201ENST00000262327 PIK3R4Q99570 1358 aa12.74□□□□□ -0.37
LIG3-201ENST00000262327 TMPOP42166 694 aaKnown RBP12.74□□□□□ -0.37
LIG3-201ENST00000262327 RSPH6AQ9H0K4 717 aa12.73□□□□□ -0.37
LIG3-201ENST00000262327 ANTXR1Q9H6X2 564 aa12.73□□□□□ -0.37
LIG3-201ENST00000262327 TRIM35Q9UPQ4 493 aa12.73□□□□□ -0.37
LIG3-201ENST00000262327 RIPK4P57078 832 aa12.73□□□□□ -0.37
LIG3-201ENST00000262327 TMEM57Q8N5G2 664 aa12.73□□□□□ -0.37
LIG3-201ENST00000262327 CCDC27Q2M243 656 aa12.71□□□□□ -0.37
LIG3-201ENST00000262327 C22orf23Q9BZE7 217 aa12.71□□□□□ -0.37
LIG3-201ENST00000262327 A0A1W2PP64 1363 aa12.71□□□□□ -0.37
LIG3-201ENST00000262327 ATAD2Q6PL18 1390 aa12.71□□□□□ -0.37
LIG3-201ENST00000262327 ELL2O00472 640 aaPredicted RBP12.71□□□□□ -0.38
LIG3-201ENST00000262327 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.71□□□□□ -0.38
LIG3-201ENST00000262327 SLC26A8Q96RN1 970 aa12.71□□□□□ -0.38
LIG3-201ENST00000262327 THUMPD2Q9BTF0 503 aaKnown RBP12.71□□□□□ -0.38
LIG3-201ENST00000262327 LNPKQ9C0E8 428 aa12.7□□□□□ -0.38
LIG3-201ENST00000262327 WAPLQ7Z5K2 1190 aa12.7□□□□□ -0.38
LIG3-201ENST00000262327 PLEKHF1Q96S99 279 aa12.7□□□□□ -0.38
LIG3-201ENST00000262327 C1orf115Q9H7X2 142 aa12.7□□□□□ -0.38
LIG3-201ENST00000262327 ANKRD36BQ8N2N9 1353 aa12.7□□□□□ -0.38
LIG3-201ENST00000262327 PTCH1Q13635 1447 aa12.7□□□□□ -0.38
LIG3-201ENST00000262327 PTPRUQ92729 1446 aa12.7□□□□□ -0.38
LIG3-201ENST00000262327 FYB1O15117 783 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms