RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 SRCAPQ6ZRS2 3230 aa15.24■□□□□ 0.03
VPS50-201ENST00000251739 TULP4Q9NRJ4 1543 aa15.23■□□□□ 0.03
VPS50-201ENST00000251739 RALGAPBQ86X10 1494 aa15.23■□□□□ 0.03
VPS50-201ENST00000251739 KRT28Q7Z3Y7 464 aa15.23■□□□□ 0.03
VPS50-201ENST00000251739 RBM42Q9BTD8 480 aaKnown RBP15.23■□□□□ 0.03
VPS50-201ENST00000251739 NRAPQ86VF7 1730 aa15.23■□□□□ 0.03
VPS50-201ENST00000251739 ITSN1Q15811 1721 aa15.22■□□□□ 0.03
VPS50-201ENST00000251739 KIAA1210Q9ULL0 1709 aa15.21■□□□□ 0.03
VPS50-201ENST00000251739 HRCP23327 699 aa15.21■□□□□ 0.03
VPS50-201ENST00000251739 SAFB2Q14151 953 aaKnown RBP eCLIP15.2■□□□□ 0.02
VPS50-201ENST00000251739 GJD4Q96KN9 370 aaPredicted RBP15.2■□□□□ 0.02
VPS50-201ENST00000251739 ARHGEF10O15013 1369 aa15.2■□□□□ 0.02
VPS50-201ENST00000251739 UNC5CLQ8IV45 518 aa15.19■□□□□ 0.02
VPS50-201ENST00000251739 TOPAZ1Q8N9V7 1692 aa15.19■□□□□ 0.02
VPS50-201ENST00000251739 PRR36Q9H6K5 1346 aa15.18■□□□□ 0.02
VPS50-201ENST00000251739 STAC3Q96MF2 364 aa15.18■□□□□ 0.02
VPS50-201ENST00000251739 EIF3AQ14152 1382 aaKnown RBP15.18■□□□□ 0.02
VPS50-201ENST00000251739 ATP7BP35670 1465 aa15.18■□□□□ 0.02
VPS50-201ENST00000251739 COL14A1Q05707 1796 aaKnown RBP15.17■□□□□ 0.02
VPS50-201ENST00000251739 PSME1Q06323 249 aa15.17■□□□□ 0.02
VPS50-201ENST00000251739 ZNF692Q9BU19 519 aaPredicted RBP15.17■□□□□ 0.02
VPS50-201ENST00000251739 POGKQ9P215 609 aa15.17■□□□□ 0.02
VPS50-201ENST00000251739 DCAF11Q8TEB1 546 aa15.16■□□□□ 0.02
VPS50-201ENST00000251739 TRAK1Q9UPV9 953 aa15.16■□□□□ 0.02
VPS50-201ENST00000251739 SSUH2Q9Y2M2 353 aa15.16■□□□□ 0.02
VPS50-201ENST00000251739 CABLES1Q8TDN4 633 aa15.15■□□□□ 0.02
VPS50-201ENST00000251739 VPS72Q15906 364 aa15.14■□□□□ 0.01
VPS50-201ENST00000251739 PMFBP1Q8TBY8 1022 aa15.14■□□□□ 0.01
VPS50-201ENST00000251739 HIRIP3Q9BW71 556 aaPredicted RBP15.14■□□□□ 0.01
VPS50-201ENST00000251739 MINK1Q8N4C8 1332 aaPredicted RBP15.14■□□□□ 0.01
VPS50-201ENST00000251739 PHRF1Q9P1Y6 1649 aaKnown RBP15.14■□□□□ 0.01
VPS50-201ENST00000251739 WASLO00401 505 aaPredicted RBP15.13■□□□□ 0.01
VPS50-201ENST00000251739 KDM2AQ9Y2K7 1162 aa15.13■□□□□ 0.01
VPS50-201ENST00000251739 ONECUT3O60422 494 aaPredicted RBP15.12■□□□□ 0.01
VPS50-201ENST00000251739 CCDC125Q86Z20 511 aa15.12■□□□□ 0.01
VPS50-201ENST00000251739 BLMP54132 1417 aaPredicted RBP15.11■□□□□ 0.01
VPS50-201ENST00000251739 GPRASP1Q5JY77 1395 aa15.11■□□□□ 0.01
VPS50-201ENST00000251739 THSD7AQ9UPZ6 1657 aa15.1■□□□□ 0.01
VPS50-201ENST00000251739 FAM83GA6ND36 823 aa15.1■□□□□ 0.01
VPS50-201ENST00000251739 HAP1P54257 671 aaPredicted RBP15.09■□□□□ 0.01
VPS50-201ENST00000251739 LMOD2Q6P5Q4 547 aa15.08■□□□□ 0
VPS50-201ENST00000251739 SEPT12Q8IYM1 358 aa15.08■□□□□ 0
VPS50-201ENST00000251739 POLR3AO14802 1390 aaPredicted RBP15.08■□□□□ 0
VPS50-201ENST00000251739 PROM2Q8N271 834 aa15.07■□□□□ 0
VPS50-201ENST00000251739 AKT1S1Q96B36 256 aa15.06■□□□□ 0
VPS50-201ENST00000251739 NRKQ7Z2Y5 1582 aa15.06■□□□□ 0
VPS50-201ENST00000251739 QRICH2Q9H0J4 1663 aa15.06■□□□□ 0
VPS50-201ENST00000251739 NUDT16Q96DE0 195 aaKnown RBP15.05■□□□□ -0
VPS50-201ENST00000251739 RGPD1P0DJD0 1748 aa15.05■□□□□ -0
VPS50-201ENST00000251739 TNS1Q9HBL0 1735 aaKnown RBP15.05■□□□□ -0
VPS50-201ENST00000251739 LMO7Q8WWI1 1683 aa15.04■□□□□ -0
VPS50-201ENST00000251739 PLEKHG5O94827 1062 aa15.04■□□□□ -0
VPS50-201ENST00000251739 NGDNQ8NEJ9 315 aaKnown RBP15.04■□□□□ -0
VPS50-201ENST00000251739 BTG4Q9NY30 223 aa15.03■□□□□ -0
VPS50-201ENST00000251739 ZRANB1Q9UGI0 708 aa15.03■□□□□ -0
VPS50-201ENST00000251739 SPATA31A5Q5VU36 1347 aa15.02■□□□□ -0
VPS50-201ENST00000251739 SPATA31A7Q8IWB4 1347 aa15.02■□□□□ -0
VPS50-201ENST00000251739 KRT27Q7Z3Y8 459 aa15.02■□□□□ -0
VPS50-201ENST00000251739 TRPM1Q7Z4N2 1603 aa15.02□□□□□ -0.01
VPS50-201ENST00000251739 PLEKHG3A1L390 1219 aa15.01□□□□□ -0.01
VPS50-201ENST00000251739 NBPF1Q3BBV0 1214 aa15.01□□□□□ -0.01
VPS50-201ENST00000251739 CDK19Q9BWU1 502 aa15.01□□□□□ -0.01
VPS50-201ENST00000251739 KIAA0232Q92628 1395 aa15□□□□□ -0.01
VPS50-201ENST00000251739 LRP5O75197 1615 aa15□□□□□ -0.01
VPS50-201ENST00000251739 DEFB132Q7Z7B7 95 aa15□□□□□ -0.01
VPS50-201ENST00000251739 CCDC9Q9Y3X0 531 aaKnown RBP15□□□□□ -0.01
VPS50-201ENST00000251739 ACEP12821 1306 aa14.99□□□□□ -0.01
VPS50-201ENST00000251739 FAM98CQ17RN3 349 aaKnown RBP14.99□□□□□ -0.01
VPS50-201ENST00000251739 PRDM11Q9NQV5 511 aa14.99□□□□□ -0.01
VPS50-201ENST00000251739 CCDC61Q9Y6R9 512 aa14.99□□□□□ -0.01
VPS50-201ENST00000251739 USP19O94966 1318 aa14.98□□□□□ -0.01
VPS50-201ENST00000251739 PAK3O75914 559 aaPredicted RBP14.98□□□□□ -0.01
VPS50-201ENST00000251739 NBPF8Q3BBV2 869 aa14.98□□□□□ -0.01
VPS50-201ENST00000251739 DISP2A7MBM2 1401 aa14.98□□□□□ -0.01
VPS50-201ENST00000251739 CPDO75976 1380 aa14.98□□□□□ -0.01
VPS50-201ENST00000251739 CAMTA1Q9Y6Y1 1673 aa14.97□□□□□ -0.01
VPS50-201ENST00000251739 SPATA31A1Q5TZJ5 1347 aa14.96□□□□□ -0.01
VPS50-201ENST00000251739 CENPJQ9HC77 1338 aaPredicted RBP14.96□□□□□ -0.01
VPS50-201ENST00000251739 PPIP5K1Q6PFW1 1433 aa14.96□□□□□ -0.01
VPS50-201ENST00000251739 PIK3C2AO00443 1686 aa14.96□□□□□ -0.01
VPS50-201ENST00000251739 BRD4O60885 1362 aaPredicted RBP14.96□□□□□ -0.02
VPS50-201ENST00000251739 SSH2Q76I76 1423 aa14.95□□□□□ -0.02
VPS50-201ENST00000251739 SLIT3O75094 1523 aa14.95□□□□□ -0.02
VPS50-201ENST00000251739 AKAP12Q02952 1782 aa14.95□□□□□ -0.02
VPS50-201ENST00000251739 PARP4Q9UKK3 1724 aaKnown RBP14.95□□□□□ -0.02
VPS50-201ENST00000251739 SF3B2Q13435 895 aaKnown RBP14.94□□□□□ -0.02
VPS50-201ENST00000251739 CHRNA2Q15822 529 aa14.94□□□□□ -0.02
VPS50-201ENST00000251739 COL18A1P39060 1754 aa14.93□□□□□ -0.02
VPS50-201ENST00000251739 USP6P35125 1406 aa14.93□□□□□ -0.02
VPS50-201ENST00000251739 RREB1Q92766 1687 aa14.93□□□□□ -0.02
VPS50-201ENST00000251739 WNK3Q9BYP7 1800 aa14.92□□□□□ -0.02
VPS50-201ENST00000251739 A0A0G2JS52 829 aa14.92□□□□□ -0.02
VPS50-201ENST00000251739 MYT1Q01538 1121 aa14.92□□□□□ -0.02
VPS50-201ENST00000251739 NUTM2GQ5VZR2 741 aa14.92□□□□□ -0.02
VPS50-201ENST00000251739 L3MBTL2Q969R5 705 aa14.92□□□□□ -0.02
VPS50-201ENST00000251739 COL5A2P05997 1499 aaPredicted RBP14.91□□□□□ -0.02
VPS50-201ENST00000251739 BAG6P46379 1132 aa14.91□□□□□ -0.02
VPS50-201ENST00000251739 ZC3H6P61129 1189 aaKnown RBP14.91□□□□□ -0.02
VPS50-201ENST00000251739 PEAK1Q9H792 1746 aa14.9□□□□□ -0.02
VPS50-201ENST00000251739 SRPK2P78362 688 aaKnown RBP14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms