RNA–Protein interactions for RNA: ENST00000250495.9

NEDD8-201, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NEDD8, Length 708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-201ENST00000250495 BTG4Q9NY30 223 aa30.41■■■□□ 2.46
NEDD8-201ENST00000250495 PLEKHG3A1L390 1219 aa30.37■■■□□ 2.45
NEDD8-201ENST00000250495 NBPF8Q3BBV2 869 aa30.36■■■□□ 2.45
NEDD8-201ENST00000250495 ACEP12821 1306 aa30.36■■■□□ 2.45
NEDD8-201ENST00000250495 COL14A1Q05707 1796 aaKnown RBP30.36■■■□□ 2.45
NEDD8-201ENST00000250495 L3MBTL2Q969R5 705 aa30.35■■■□□ 2.45
NEDD8-201ENST00000250495 POLR3AO14802 1390 aaPredicted RBP30.35■■■□□ 2.45
NEDD8-201ENST00000250495 BRWD3Q6RI45 1802 aa30.35■■■□□ 2.45
NEDD8-201ENST00000250495 CENPJQ9HC77 1338 aaPredicted RBP30.34■■■□□ 2.45
NEDD8-201ENST00000250495 PRDM11Q9NQV5 511 aa30.34■■■□□ 2.45
NEDD8-201ENST00000250495 KRT27Q7Z3Y8 459 aa30.33■■■□□ 2.45
NEDD8-201ENST00000250495 ZRANB1Q9UGI0 708 aa30.33■■■□□ 2.45
NEDD8-201ENST00000250495 BLMP54132 1417 aaPredicted RBP30.32■■■□□ 2.44
NEDD8-201ENST00000250495 SRPK2P78362 688 aaKnown RBP30.32■■■□□ 2.44
NEDD8-201ENST00000250495 A0A0G2JS52 829 aa30.31■■■□□ 2.44
NEDD8-201ENST00000250495 MYT1Q01538 1121 aa30.31■■■□□ 2.44
NEDD8-201ENST00000250495 NRAPQ86VF7 1730 aa30.3■■■□□ 2.44
NEDD8-201ENST00000250495 EP400Q96L91 3159 aa30.3■■■□□ 2.44
NEDD8-201ENST00000250495 SF3B2Q13435 895 aaKnown RBP30.3■■■□□ 2.44
NEDD8-201ENST00000250495 FAM98CQ17RN3 349 aaKnown RBP30.3■■■□□ 2.44
NEDD8-201ENST00000250495 SIN3AQ96ST3 1273 aa30.29■■■□□ 2.44
NEDD8-201ENST00000250495 CRYBG1Q9Y4K1 1723 aa30.29■■■□□ 2.44
NEDD8-201ENST00000250495 TOPAZ1Q8N9V7 1692 aa30.28■■■□□ 2.44
NEDD8-201ENST00000250495 NUTM2GQ5VZR2 741 aa30.28■■■□□ 2.44
NEDD8-201ENST00000250495 SPATA31A5Q5VU36 1347 aa30.26■■■□□ 2.44
NEDD8-201ENST00000250495 SPATA31A7Q8IWB4 1347 aa30.26■■■□□ 2.44
NEDD8-201ENST00000250495 ABTB2Q8N961 1025 aa30.26■■■□□ 2.43
NEDD8-201ENST00000250495 KIAA0232Q92628 1395 aa30.26■■■□□ 2.43
NEDD8-201ENST00000250495 NEUROD1Q13562 356 aa30.25■■■□□ 2.43
NEDD8-201ENST00000250495 CABP2Q9NPB3 220 aa30.25■■■□□ 2.43
NEDD8-201ENST00000250495 ZC3H6P61129 1189 aaKnown RBP30.24■■■□□ 2.43
NEDD8-201ENST00000250495 PPIP5K1Q6PFW1 1433 aa30.23■■■□□ 2.43
NEDD8-201ENST00000250495 CHRNA2Q15822 529 aa30.22■■■□□ 2.43
NEDD8-201ENST00000250495 DEFB132Q7Z7B7 95 aa30.2■■■□□ 2.43
NEDD8-201ENST00000250495 NLRP13Q86W25 1043 aa30.2■■■□□ 2.43
NEDD8-201ENST00000250495 BRD4O60885 1362 aaPredicted RBP30.19■■■□□ 2.42
NEDD8-201ENST00000250495 PHRF1Q9P1Y6 1649 aaKnown RBP30.19■■■□□ 2.42
NEDD8-201ENST00000250495 QRICH2Q9H0J4 1663 aa30.18■■■□□ 2.42
NEDD8-201ENST00000250495 STRN4Q9NRL3 753 aa30.18■■■□□ 2.42
NEDD8-201ENST00000250495 CABP1Q9NZU7 370 aa30.18■■■□□ 2.42
NEDD8-201ENST00000250495 EVA1CP58658 441 aa30.17■■■□□ 2.42
NEDD8-201ENST00000250495 SPATA31A1Q5TZJ5 1347 aa30.17■■■□□ 2.42
NEDD8-201ENST00000250495 EVC2Q86UK5 1308 aa30.17■■■□□ 2.42
NEDD8-201ENST00000250495 ROCK2O75116 1388 aaKnown RBP30.15■■■□□ 2.42
NEDD8-201ENST00000250495 USP19O94966 1318 aa30.14■■■□□ 2.42
NEDD8-201ENST00000250495 TRPM1Q7Z4N2 1603 aa30.14■■■□□ 2.41
NEDD8-201ENST00000250495 GCP02774 474 aa30.13■■■□□ 2.41
NEDD8-201ENST00000250495 CPDO75976 1380 aa30.13■■■□□ 2.41
NEDD8-201ENST00000250495 BAG6P46379 1132 aa30.12■■■□□ 2.41
NEDD8-201ENST00000250495 THSD7AQ9UPZ6 1657 aa30.08■■■□□ 2.41
NEDD8-201ENST00000250495 NRKQ7Z2Y5 1582 aa30.08■■■□□ 2.41
NEDD8-201ENST00000250495 USP6P35125 1406 aa30.08■■■□□ 2.41
NEDD8-201ENST00000250495 NLRP6P59044 892 aa30.08■■■□□ 2.41
NEDD8-201ENST00000250495 USP35Q9P2H5 1018 aa30.08■■■□□ 2.41
NEDD8-201ENST00000250495 FAM182BQ5T319 152 aa30.07■■■□□ 2.4
NEDD8-201ENST00000250495 ZNF692Q9BU19 519 aaPredicted RBP30.07■■■□□ 2.4
NEDD8-201ENST00000250495 SSH2Q76I76 1423 aa30.06■■■□□ 2.4
NEDD8-201ENST00000250495 BARGINQ6ZT62 677 aa30.06■■■□□ 2.4
NEDD8-201ENST00000250495 CAMTA1Q9Y6Y1 1673 aa30.05■■■□□ 2.4
NEDD8-201ENST00000250495 LARP1Q6PKG0 1096 aaKnown RBP30.05■■■□□ 2.4
NEDD8-201ENST00000250495 FAM196AQ6ZSG2 479 aa30.03■■■□□ 2.4
NEDD8-201ENST00000250495 TCP11L2Q8N4U5 519 aa30.02■■■□□ 2.4
NEDD8-201ENST00000250495 PDE3BQ13370 1112 aa30.01■■■□□ 2.39
NEDD8-201ENST00000250495 THRAP3Q9Y2W1 955 aaKnown RBP30.01■■■□□ 2.39
NEDD8-201ENST00000250495 LMO7Q8WWI1 1683 aa30■■■□□ 2.39
NEDD8-201ENST00000250495 RGPD1P0DJD0 1748 aa29.99■■■□□ 2.39
NEDD8-201ENST00000250495 EN1Q05925 392 aaPredicted RBP29.99■■■□□ 2.39
NEDD8-201ENST00000250495 ZBTB7CA1YPR0 619 aa29.98■■■□□ 2.39
NEDD8-201ENST00000250495 CARD11Q9BXL7 1154 aa29.97■■■□□ 2.39
NEDD8-201ENST00000250495 TTC21BQ7Z4L5 1316 aa29.96■■■□□ 2.39
NEDD8-201ENST00000250495 AATKQ6ZMQ8 1374 aa29.96■■■□□ 2.39
NEDD8-201ENST00000250495 SLIT3O75094 1523 aa29.95■■■□□ 2.38
NEDD8-201ENST00000250495 COL5A2P05997 1499 aaPredicted RBP29.94■■■□□ 2.38
NEDD8-201ENST00000250495 TRIM37O94972 964 aa29.94■■■□□ 2.38
NEDD8-201ENST00000250495 TTC21AQ8NDW8 1320 aa29.94■■■□□ 2.38
NEDD8-201ENST00000250495 TONSLQ96HA7 1378 aa29.93■■■□□ 2.38
NEDD8-201ENST00000250495 KCNH5Q8NCM2 988 aa29.93■■■□□ 2.38
NEDD8-201ENST00000250495 DISP2A7MBM2 1401 aa29.93■■■□□ 2.38
NEDD8-201ENST00000250495 SRCAPQ6ZRS2 3230 aa29.92■■■□□ 2.38
NEDD8-201ENST00000250495 SBNO2Q9Y2G9 1366 aa29.92■■■□□ 2.38
NEDD8-201ENST00000250495 CRB1P82279 1406 aa29.91■■■□□ 2.38
NEDD8-201ENST00000250495 PIK3C2AO00443 1686 aa29.91■■■□□ 2.38
NEDD8-201ENST00000250495 CPSF1Q10570 1443 aaKnown RBP29.9■■■□□ 2.38
NEDD8-201ENST00000250495 AKAP12Q02952 1782 aa29.9■■■□□ 2.38
NEDD8-201ENST00000250495 KTN1Q86UP2 1357 aaKnown RBP29.9■■■□□ 2.38
NEDD8-201ENST00000250495 APBA3O96018 575 aa29.88■■■□□ 2.37
NEDD8-201ENST00000250495 EZH2Q15910 746 aaKnown RBP29.88■■■□□ 2.37
NEDD8-201ENST00000250495 TOM1L2Q6ZVM7 507 aa29.88■■■□□ 2.37
NEDD8-201ENST00000250495 PSDA5PKW4 1024 aaPredicted RBP29.87■■■□□ 2.37
NEDD8-201ENST00000250495 C11orf95C9JLR9 678 aaPredicted RBP29.87■■■□□ 2.37
NEDD8-201ENST00000250495 ARHGEF25Q86VW2 580 aa29.87■■■□□ 2.37
NEDD8-201ENST00000250495 TNS1Q9HBL0 1735 aaKnown RBP29.87■■■□□ 2.37
NEDD8-201ENST00000250495 CAMKK2Q96RR4 588 aa29.86■■■□□ 2.37
NEDD8-201ENST00000250495 AXIN2Q9Y2T1 843 aa29.85■■■□□ 2.37
NEDD8-201ENST00000250495 COL18A1P39060 1754 aa29.83■■■□□ 2.37
NEDD8-201ENST00000250495 WDR17Q8IZU2 1322 aa29.83■■■□□ 2.37
NEDD8-201ENST00000250495 SOX12O15370 315 aa29.83■■■□□ 2.37
NEDD8-201ENST00000250495 TMC1Q8TDI8 760 aa29.83■■■□□ 2.37
NEDD8-201ENST00000250495 PARD3Q8TEW0 1356 aa29.82■■■□□ 2.36
NEDD8-201ENST00000250495 PARP4Q9UKK3 1724 aaKnown RBP29.82■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms