RNA–Protein interactions for RNA: ENST00000247020.8

SDF2-201, Transcript of stromal cell derived factor 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDF2, Length 1,568 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2-201ENST00000247020 TTC21BQ7Z4L5 1316 aa18.92■□□□□ 0.62
SDF2-201ENST00000247020 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.92■□□□□ 0.62
SDF2-201ENST00000247020 LRRC7Q96NW7 1537 aa18.92■□□□□ 0.62
SDF2-201ENST00000247020 COL3A1P02461 1466 aaPredicted RBP18.91■□□□□ 0.62
SDF2-201ENST00000247020 DCCP43146 1447 aa18.91■□□□□ 0.62
SDF2-201ENST00000247020 KIF1AQ12756 1690 aa18.91■□□□□ 0.62
SDF2-201ENST00000247020 OVOS2A0A0J9YW53 1432 aa18.9■□□□□ 0.62
SDF2-201ENST00000247020 OVOS2Q6IE36 1432 aa18.9■□□□□ 0.62
SDF2-201ENST00000247020 TNNT2P45379 298 aaPredicted RBP18.9■□□□□ 0.62
SDF2-201ENST00000247020 COG3Q96JB2 828 aa18.9■□□□□ 0.62
SDF2-201ENST00000247020 PNPLA6Q8IY17 1366 aa18.9■□□□□ 0.62
SDF2-201ENST00000247020 NGEFQ8N5V2 710 aa18.89■□□□□ 0.62
SDF2-201ENST00000247020 NUTM2FA1L443 756 aa18.89■□□□□ 0.61
SDF2-201ENST00000247020 HSPA2P54652 639 aa18.89■□□□□ 0.61
SDF2-201ENST00000247020 PDE3BQ13370 1112 aa18.89■□□□□ 0.61
SDF2-201ENST00000247020 PROSER2Q86WR7 435 aaPredicted RBP18.89■□□□□ 0.61
SDF2-201ENST00000247020 GTF3C3Q9Y5Q9 886 aa18.89■□□□□ 0.61
SDF2-201ENST00000247020 NME9Q86XW9 330 aa18.88■□□□□ 0.61
SDF2-201ENST00000247020 NGDNQ8NEJ9 315 aaKnown RBP18.88■□□□□ 0.61
SDF2-201ENST00000247020 PIK3C2AO00443 1686 aa18.87■□□□□ 0.61
SDF2-201ENST00000247020 CDK12Q9NYV4 1490 aaPredicted RBP18.87■□□□□ 0.61
SDF2-201ENST00000247020 USP31Q70CQ4 1352 aa18.87■□□□□ 0.61
SDF2-201ENST00000247020 C19orf44Q9H6X5 657 aa18.85■□□□□ 0.61
SDF2-201ENST00000247020 PMFBP1Q8TBY8 1022 aa18.85■□□□□ 0.61
SDF2-201ENST00000247020 PHF8Q9UPP1 1060 aa18.85■□□□□ 0.61
SDF2-201ENST00000247020 NUDCQ9Y266 331 aa18.85■□□□□ 0.61
SDF2-201ENST00000247020 XIRP1Q702N8 1843 aaKnown RBP18.84■□□□□ 0.61
SDF2-201ENST00000247020 C14orf37Q86TY3 774 aa18.84■□□□□ 0.61
SDF2-201ENST00000247020 MARF1Q9Y4F3 1742 aaKnown RBP18.84■□□□□ 0.61
SDF2-201ENST00000247020 NCBP3Q53F19 620 aaKnown RBP18.83■□□□□ 0.6
SDF2-201ENST00000247020 POLKQ9UBT6 870 aa18.83■□□□□ 0.6
SDF2-201ENST00000247020 TMEM94Q12767 1356 aa18.82■□□□□ 0.6
SDF2-201ENST00000247020 IQSEC2Q5JU85 1478 aa18.8■□□□□ 0.6
SDF2-201ENST00000247020 C1orf167Q5SNV9 1468 aa18.8■□□□□ 0.6
SDF2-201ENST00000247020 RUNDC1Q96C34 613 aa18.8■□□□□ 0.6
SDF2-201ENST00000247020 DIAPH1O60610 1272 aaKnown RBP18.79■□□□□ 0.6
SDF2-201ENST00000247020 AEBP2Q6ZN18 517 aaPredicted RBP18.79■□□□□ 0.6
SDF2-201ENST00000247020 MST1RQ04912 1400 aa18.78■□□□□ 0.6
SDF2-201ENST00000247020 RBM33Q96EV2 1170 aaKnown RBP18.78■□□□□ 0.6
SDF2-201ENST00000247020 PNNQ9H307 717 aaKnown RBP18.78■□□□□ 0.6
SDF2-201ENST00000247020 ZRANB1Q9UGI0 708 aa18.78■□□□□ 0.6
SDF2-201ENST00000247020 TRPM3Q9HCF6 1732 aaPredicted RBP18.78■□□□□ 0.6
SDF2-201ENST00000247020 ZNF521Q96K83 1311 aa18.77■□□□□ 0.6
SDF2-201ENST00000247020 DMRT2Q9Y5R5 561 aa18.77■□□□□ 0.6
SDF2-201ENST00000247020 KIF24Q5T7B8 1368 aa18.77■□□□□ 0.59
SDF2-201ENST00000247020 ESCO1Q5FWF5 840 aa18.76■□□□□ 0.59
SDF2-201ENST00000247020 MSH6P52701 1360 aa18.76■□□□□ 0.59
SDF2-201ENST00000247020 ATF3P18847 181 aa18.76■□□□□ 0.59
SDF2-201ENST00000247020 U2AF1L5P0DN76 240 aaPredicted RBP18.75■□□□□ 0.59
SDF2-201ENST00000247020 U2AF1Q01081 240 aaKnown RBP eCLIP18.75■□□□□ 0.59
SDF2-201ENST00000247020 CADPS2Q86UW7 1296 aa18.75■□□□□ 0.59
SDF2-201ENST00000247020 PEAK1Q9H792 1746 aa18.75■□□□□ 0.59
SDF2-201ENST00000247020 CCDC146Q8IYE0 955 aa18.74■□□□□ 0.59
SDF2-201ENST00000247020 EMILIN1Q9Y6C2 1016 aa18.74■□□□□ 0.59
SDF2-201ENST00000247020 APAF1O14727 1248 aa18.73■□□□□ 0.59
SDF2-201ENST00000247020 PHRF1Q9P1Y6 1649 aaKnown RBP18.73■□□□□ 0.59
SDF2-201ENST00000247020 NEFLP07196 543 aa18.72■□□□□ 0.59
SDF2-201ENST00000247020 FCHSD2O94868 740 aa18.72■□□□□ 0.59
SDF2-201ENST00000247020 RGPD1P0DJD0 1748 aa18.72■□□□□ 0.59
SDF2-201ENST00000247020 PSME1Q06323 249 aa18.72■□□□□ 0.59
SDF2-201ENST00000247020 CCDC27Q2M243 656 aa18.72■□□□□ 0.59
SDF2-201ENST00000247020 ALS2Q96Q42 1657 aa18.71■□□□□ 0.59
SDF2-201ENST00000247020 SBNO1A3KN83 1393 aa18.71■□□□□ 0.59
SDF2-201ENST00000247020 U2SURPO15042 1029 aaKnown RBP18.71■□□□□ 0.59
SDF2-201ENST00000247020 IL13P35225 146 aa18.71■□□□□ 0.59
SDF2-201ENST00000247020 NLRP6P59044 892 aa18.71■□□□□ 0.59
SDF2-201ENST00000247020 LTN1O94822 1766 aa18.7■□□□□ 0.58
SDF2-201ENST00000247020 GOLGA2Q08379 1002 aa18.7■□□□□ 0.58
SDF2-201ENST00000247020 RRS1Q15050 365 aaKnown RBP18.7■□□□□ 0.58
SDF2-201ENST00000247020 ABTB2Q8N961 1025 aa18.7■□□□□ 0.58
SDF2-201ENST00000247020 ORAI2Q96SN7 254 aa18.7■□□□□ 0.58
SDF2-201ENST00000247020 SALL2Q9Y467 1007 aaPredicted RBP18.7■□□□□ 0.58
SDF2-201ENST00000247020 FLT4P35916 1363 aa18.7■□□□□ 0.58
SDF2-201ENST00000247020 PPM1GO15355 546 aaPredicted RBP18.69■□□□□ 0.58
SDF2-201ENST00000247020 FBLN1P23142 703 aa18.69■□□□□ 0.58
SDF2-201ENST00000247020 TCP11L2Q8N4U5 519 aa18.69■□□□□ 0.58
SDF2-201ENST00000247020 PLEKHF1Q96S99 279 aa18.69■□□□□ 0.58
SDF2-201ENST00000247020 PHF23Q9BUL5 403 aaPredicted RBP18.69■□□□□ 0.58
SDF2-201ENST00000247020 SLIT3O75094 1523 aa18.69■□□□□ 0.58
SDF2-201ENST00000247020 SUPT16HQ9Y5B9 1047 aaKnown RBP18.68■□□□□ 0.58
SDF2-201ENST00000247020 RTL1A6NKG5 1358 aa18.68■□□□□ 0.58
SDF2-201ENST00000247020 NFAT5O94916 1531 aa18.68■□□□□ 0.58
SDF2-201ENST00000247020 MAPK8IP3Q9UPT6 1336 aa18.67■□□□□ 0.58
SDF2-201ENST00000247020 PAK3O75914 559 aaPredicted RBP18.67■□□□□ 0.58
SDF2-201ENST00000247020 ZNF335Q9H4Z2 1342 aaPredicted RBP18.66■□□□□ 0.58
SDF2-201ENST00000247020 SENP3-EIF4A1A0A087X0R7 540 aa18.66■□□□□ 0.58
SDF2-201ENST00000247020 MAP3K19Q56UN5 1328 aa18.66■□□□□ 0.58
SDF2-201ENST00000247020 RNF123Q5XPI4 1314 aa18.66■□□□□ 0.58
SDF2-201ENST00000247020 NEFMP07197 916 aa18.65■□□□□ 0.58
SDF2-201ENST00000247020 ERICH6BQ5W0A0 696 aa18.65■□□□□ 0.58
SDF2-201ENST00000247020 KCNH5Q8NCM2 988 aa18.65■□□□□ 0.58
SDF2-201ENST00000247020 RSPH6AQ9H0K4 717 aa18.65■□□□□ 0.58
SDF2-201ENST00000247020 E9PSI1 815 aa18.64■□□□□ 0.58
SDF2-201ENST00000247020 FOXO3O43524 673 aa18.64■□□□□ 0.58
SDF2-201ENST00000247020 SLFN5Q08AF3 891 aa18.64■□□□□ 0.58
SDF2-201ENST00000247020 WDR63Q8IWG1 891 aa18.64■□□□□ 0.58
SDF2-201ENST00000247020 WWC1Q8IX03 1113 aa18.64■□□□□ 0.58
SDF2-201ENST00000247020 TRMT2AQ8IZ69 625 aaKnown RBP18.64■□□□□ 0.58
SDF2-201ENST00000247020 NPHP3Q7Z494 1330 aa18.64■□□□□ 0.57
SDF2-201ENST00000247020 KRT28Q7Z3Y7 464 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms