RNA–Protein interactions for RNA: ENST00000241704.7

COPA-201, Transcript of coatomer protein complex subunit alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPA, Length 4,789 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-201ENST00000241704 ANKRD45Q5TZF3 282 aa13.46□□□□□ -0.25
COPA-201ENST00000241704 SF3B2Q13435 895 aaKnown RBP13.46□□□□□ -0.25
COPA-201ENST00000241704 NUDT16Q96DE0 195 aaKnown RBP13.46□□□□□ -0.26
COPA-201ENST00000241704 WAPLQ7Z5K2 1190 aa13.45□□□□□ -0.26
COPA-201ENST00000241704 NECTIN2Q92692 538 aa13.45□□□□□ -0.26
COPA-201ENST00000241704 PRDM11Q9NQV5 511 aa13.45□□□□□ -0.26
COPA-201ENST00000241704 DNMT1P26358 1616 aaKnown RBP13.45□□□□□ -0.26
COPA-201ENST00000241704 NASPP49321 788 aaPredicted RBP13.45□□□□□ -0.26
COPA-201ENST00000241704 ABCC10Q5T3U5 1492 aa13.45□□□□□ -0.26
COPA-201ENST00000241704 TRIM6-TRIM34B2RNG4 842 aa13.45□□□□□ -0.26
COPA-201ENST00000241704 KIAA2012Q0VF49 1180 aa13.45□□□□□ -0.26
COPA-201ENST00000241704 WDR63Q8IWG1 891 aa13.44□□□□□ -0.26
COPA-201ENST00000241704 RALGAPBQ86X10 1494 aa13.44□□□□□ -0.26
COPA-201ENST00000241704 GAS2L2Q8NHY3 880 aa13.44□□□□□ -0.26
COPA-201ENST00000241704 DDX58O95786 925 aaKnown RBP13.44□□□□□ -0.26
COPA-201ENST00000241704 C9orf78Q9NZ63 289 aaPredicted RBP13.44□□□□□ -0.26
COPA-201ENST00000241704 PANK1Q8TE04 598 aa13.44□□□□□ -0.26
COPA-201ENST00000241704 DDX49Q9Y6V7 483 aaKnown RBP13.43□□□□□ -0.26
COPA-201ENST00000241704 ZSCAN30Q86W11 494 aa13.43□□□□□ -0.26
COPA-201ENST00000241704 GOLGA6L4A6NEF3 574 aa13.43□□□□□ -0.26
COPA-201ENST00000241704 PANK2Q9BZ23 570 aa13.43□□□□□ -0.26
COPA-201ENST00000241704 TEX14Q8IWB6 1497 aa13.43□□□□□ -0.26
COPA-201ENST00000241704 EXOSC9Q06265 439 aaKnown RBP13.43□□□□□ -0.26
COPA-201ENST00000241704 ADGRL2O95490 1459 aa13.42□□□□□ -0.26
COPA-201ENST00000241704 FKBP5Q13451 457 aaPredicted RBP13.42□□□□□ -0.26
COPA-201ENST00000241704 GNL2Q13823 731 aaKnown RBP13.42□□□□□ -0.26
COPA-201ENST00000241704 TOM1L2Q6ZVM7 507 aa13.42□□□□□ -0.26
COPA-201ENST00000241704 PRAG1Q86YV5 1406 aa13.42□□□□□ -0.26
COPA-201ENST00000241704 DCAF8L1A6NGE4 600 aa13.41□□□□□ -0.26
COPA-201ENST00000241704 PDE3AQ14432 1141 aa13.41□□□□□ -0.26
COPA-201ENST00000241704 DISP3Q9P2K9 1392 aa13.41□□□□□ -0.26
COPA-201ENST00000241704 SULT6B1Q6IMI4 303 aa13.41□□□□□ -0.26
COPA-201ENST00000241704 DMRT2Q9Y5R5 561 aa13.41□□□□□ -0.26
COPA-201ENST00000241704 UQCRHLA0A096LP55 91 aa13.41□□□□□ -0.26
COPA-201ENST00000241704 UQCRHP07919 91 aa13.41□□□□□ -0.26
COPA-201ENST00000241704 TOMM22Q9NS69 142 aa13.41□□□□□ -0.26
COPA-201ENST00000241704 FCHSD2O94868 740 aa13.41□□□□□ -0.26
COPA-201ENST00000241704 CT47B1P0C2W7 299 aaPredicted RBP13.4□□□□□ -0.26
COPA-201ENST00000241704 XPCQ01831 940 aaPredicted RBP13.4□□□□□ -0.26
COPA-201ENST00000241704 PZPP20742 1482 aa13.4□□□□□ -0.26
COPA-201ENST00000241704 MAGI3Q5TCQ9 1506 aa13.4□□□□□ -0.26
COPA-201ENST00000241704 C8orf34Q49A92 452 aa13.4□□□□□ -0.26
COPA-201ENST00000241704 TATP17735 454 aaPredicted RBP13.39□□□□□ -0.27
COPA-201ENST00000241704 WASLO00401 505 aaPredicted RBP13.39□□□□□ -0.27
COPA-201ENST00000241704 PLEKHO1Q53GL0 409 aaPredicted RBP13.39□□□□□ -0.27
COPA-201ENST00000241704 TSR2Q969E8 191 aaKnown RBP13.38□□□□□ -0.27
COPA-201ENST00000241704 RRS1Q15050 365 aaKnown RBP13.38□□□□□ -0.27
COPA-201ENST00000241704 C22orf23Q9BZE7 217 aa13.38□□□□□ -0.27
COPA-201ENST00000241704 TWISTNBQ3B726 338 aaPredicted RBP13.37□□□□□ -0.27
COPA-201ENST00000241704 ZHX1Q9UKY1 873 aaPredicted RBP13.37□□□□□ -0.27
COPA-201ENST00000241704 ZNF771Q7L3S4 317 aaPredicted RBP13.37□□□□□ -0.27
COPA-201ENST00000241704 RBM42Q9BTD8 480 aaKnown RBP13.37□□□□□ -0.27
COPA-201ENST00000241704 BCAR3O75815 825 aa13.37□□□□□ -0.27
COPA-201ENST00000241704 WWC1Q8IX03 1113 aa13.37□□□□□ -0.27
COPA-201ENST00000241704 SLFN5Q08AF3 891 aa13.37□□□□□ -0.27
COPA-201ENST00000241704 DDX54Q8TDD1 881 aaKnown RBP13.37□□□□□ -0.27
COPA-201ENST00000241704 AMOTL2Q9Y2J4 779 aa13.36□□□□□ -0.27
COPA-201ENST00000241704 CLSTN1O94985 981 aa13.36□□□□□ -0.27
COPA-201ENST00000241704 AIMP1Q12904 312 aaKnown RBP13.36□□□□□ -0.27
COPA-201ENST00000241704 VPS37DQ86XT2 251 aa13.36□□□□□ -0.27
COPA-201ENST00000241704 PRDM10Q9NQV6 1147 aa13.36□□□□□ -0.27
COPA-201ENST00000241704 ARHGEF12Q9NZN5 1544 aa13.36□□□□□ -0.27
COPA-201ENST00000241704 ZC3H6P61129 1189 aaKnown RBP13.36□□□□□ -0.27
COPA-201ENST00000241704 FOXD4L1Q9NU39 408 aa13.36□□□□□ -0.27
COPA-201ENST00000241704 TMPOP42166 694 aaKnown RBP13.35□□□□□ -0.27
COPA-201ENST00000241704 TNRQ92752 1358 aa13.35□□□□□ -0.27
COPA-201ENST00000241704 NINLQ9Y2I6 1382 aa13.35□□□□□ -0.27
COPA-201ENST00000241704 RIC3Q7Z5B4 369 aa13.35□□□□□ -0.27
COPA-201ENST00000241704 SMAP1Q8IYB5 467 aaPredicted RBP13.35□□□□□ -0.27
COPA-201ENST00000241704 CCDC30Q5VVM6 783 aa13.35□□□□□ -0.27
COPA-201ENST00000241704 BBXQ8WY36 941 aaPredicted RBP13.35□□□□□ -0.27
COPA-201ENST00000241704 NSD2O96028 1365 aa13.34□□□□□ -0.27
COPA-201ENST00000241704 C20orf194Q5TEA3 1177 aa13.34□□□□□ -0.27
COPA-201ENST00000241704 NOL10Q9BSC4 688 aaKnown RBP13.34□□□□□ -0.27
COPA-201ENST00000241704 PLCB2Q00722 1185 aa13.34□□□□□ -0.27
COPA-201ENST00000241704 RILPL2Q969X0 211 aa13.34□□□□□ -0.27
COPA-201ENST00000241704 RBM33Q96EV2 1170 aaKnown RBP13.33□□□□□ -0.27
COPA-201ENST00000241704 TBC1D2Q9BYX2 928 aa13.33□□□□□ -0.27
COPA-201ENST00000241704 CCDC39Q9UFE4 941 aa13.33□□□□□ -0.27
COPA-201ENST00000241704 NFE2L2Q16236 605 aa13.33□□□□□ -0.28
COPA-201ENST00000241704 PPP1R1BQ9UD71 204 aaPredicted RBP13.33□□□□□ -0.28
COPA-201ENST00000241704 ST18O60284 1047 aa13.33□□□□□ -0.28
COPA-201ENST00000241704 FBXW7Q969H0 707 aa13.33□□□□□ -0.28
COPA-201ENST00000241704 TESK2Q96S53 571 aa13.33□□□□□ -0.28
COPA-201ENST00000241704 LNPKQ9C0E8 428 aa13.33□□□□□ -0.28
COPA-201ENST00000241704 NME9Q86XW9 330 aa13.32□□□□□ -0.28
COPA-201ENST00000241704 ZNF428Q96B54 188 aa13.32□□□□□ -0.28
COPA-201ENST00000241704 NOB1Q9ULX3 412 aaKnown RBP13.32□□□□□ -0.28
COPA-201ENST00000241704 ABCA8O94911 1581 aa13.32□□□□□ -0.28
COPA-201ENST00000241704 UHRF1BP1LA0JNW5 1464 aa13.32□□□□□ -0.28
COPA-201ENST00000241704 TAF3Q5VWG9 929 aa13.32□□□□□ -0.28
COPA-201ENST00000241704 DYNC1I1O14576 645 aa13.31□□□□□ -0.28
COPA-201ENST00000241704 FOXO3O43524 673 aa13.31□□□□□ -0.28
COPA-201ENST00000241704 OFD1O75665 1012 aa13.31□□□□□ -0.28
COPA-201ENST00000241704 FAM177BA6PVY3 158 aa13.31□□□□□ -0.28
COPA-201ENST00000241704 HSP90AB4PQ58FF6 505 aa13.31□□□□□ -0.28
COPA-201ENST00000241704 ATF7IPQ6VMQ6 1270 aa13.31□□□□□ -0.28
COPA-201ENST00000241704 SYAP1Q96A49 352 aaPredicted RBP13.31□□□□□ -0.28
COPA-201ENST00000241704 GNAI3P08754 354 aa13.31□□□□□ -0.28
COPA-201ENST00000241704 LRRFIP1Q32MZ4 808 aaKnown RBP13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms