RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 FKBP8Q14318 412 aa30.31■■■□□ 2.44
CDX1-201ENST00000231656 NGDNQ8NEJ9 315 aaKnown RBP30.31■■■□□ 2.44
CDX1-201ENST00000231656 AEBP2Q6ZN18 517 aaPredicted RBP30.31■■■□□ 2.44
CDX1-201ENST00000231656 SUGP2Q8IX01 1082 aaKnown RBP eCLIP30.31■■■□□ 2.44
CDX1-201ENST00000231656 USP6P35125 1406 aa30.3■■■□□ 2.44
CDX1-201ENST00000231656 NRKQ7Z2Y5 1582 aa30.3■■■□□ 2.44
CDX1-201ENST00000231656 ANKRD26Q9UPS8 1709 aa30.29■■■□□ 2.44
CDX1-201ENST00000231656 NEFLP07196 543 aa30.29■■■□□ 2.44
CDX1-201ENST00000231656 PHF8Q9UPP1 1060 aa30.29■■■□□ 2.44
CDX1-201ENST00000231656 ESCO1Q5FWF5 840 aa30.28■■■□□ 2.44
CDX1-201ENST00000231656 MORC1Q86VD1 984 aa30.28■■■□□ 2.44
CDX1-201ENST00000231656 GGNBP2Q9H3C7 697 aa30.28■■■□□ 2.44
CDX1-201ENST00000231656 C1orf167Q5SNV9 1468 aa30.27■■■□□ 2.44
CDX1-201ENST00000231656 MST1RQ04912 1400 aa30.26■■■□□ 2.44
CDX1-201ENST00000231656 CADPS2Q86UW7 1296 aa30.26■■■□□ 2.44
CDX1-201ENST00000231656 SMG6Q86US8 1419 aaKnown RBP30.26■■■□□ 2.43
CDX1-201ENST00000231656 ORAI2Q96SN7 254 aa30.25■■■□□ 2.43
CDX1-201ENST00000231656 BLMP54132 1417 aaPredicted RBP30.25■■■□□ 2.43
CDX1-201ENST00000231656 SSH2Q76I76 1423 aa30.25■■■□□ 2.43
CDX1-201ENST00000231656 TTC21BQ7Z4L5 1316 aa30.23■■■□□ 2.43
CDX1-201ENST00000231656 NME9Q86XW9 330 aa30.21■■■□□ 2.43
CDX1-201ENST00000231656 TNNT2P45379 298 aaPredicted RBP30.2■■■□□ 2.42
CDX1-201ENST00000231656 LTBP4Q8N2S1 1624 aa30.2■■■□□ 2.42
CDX1-201ENST00000231656 KIF1AQ12756 1690 aa30.19■■■□□ 2.42
CDX1-201ENST00000231656 TTC21AQ8NDW8 1320 aa30.17■■■□□ 2.42
CDX1-201ENST00000231656 ZRANB1Q9UGI0 708 aa30.15■■■□□ 2.42
CDX1-201ENST00000231656 NUDCQ9Y266 331 aa30.15■■■□□ 2.42
CDX1-201ENST00000231656 SENP3-EIF4A1A0A087X0R7 540 aa30.14■■■□□ 2.42
CDX1-201ENST00000231656 FOXO3O43524 673 aa30.13■■■□□ 2.41
CDX1-201ENST00000231656 PSME1Q06323 249 aa30.13■■■□□ 2.41
CDX1-201ENST00000231656 COG3Q96JB2 828 aa30.13■■■□□ 2.41
CDX1-201ENST00000231656 PIK3C2AO00443 1686 aa30.11■■■□□ 2.41
CDX1-201ENST00000231656 OVOS2A0A0J9YW53 1432 aa30.09■■■□□ 2.41
CDX1-201ENST00000231656 OVOS2Q6IE36 1432 aa30.09■■■□□ 2.41
CDX1-201ENST00000231656 SLAIN2Q9P270 581 aa30.09■■■□□ 2.41
CDX1-201ENST00000231656 ADAMTS8Q9UP79 889 aa30.08■■■□□ 2.41
CDX1-201ENST00000231656 PAK3O75914 559 aaPredicted RBP30.07■■■□□ 2.4
CDX1-201ENST00000231656 MTHFSP49914 203 aa30.07■■■□□ 2.4
CDX1-201ENST00000231656 MAP2P11137 1827 aaKnown RBP30.05■■■□□ 2.4
CDX1-201ENST00000231656 USP31Q70CQ4 1352 aa30.05■■■□□ 2.4
CDX1-201ENST00000231656 XPCQ01831 940 aaPredicted RBP30.05■■■□□ 2.4
CDX1-201ENST00000231656 WDR43Q15061 677 aaKnown RBP eCLIP30.05■■■□□ 2.4
CDX1-201ENST00000231656 BRINP3Q76B58 766 aa30.04■■■□□ 2.4
CDX1-201ENST00000231656 TRPM3Q9HCF6 1732 aaPredicted RBP30.04■■■□□ 2.4
CDX1-201ENST00000231656 KRT28Q7Z3Y7 464 aa30.03■■■□□ 2.4
CDX1-201ENST00000231656 ABTB2Q8N961 1025 aa30.03■■■□□ 2.4
CDX1-201ENST00000231656 FBLN1P23142 703 aa30.03■■■□□ 2.4
CDX1-201ENST00000231656 USP54Q70EL1 1684 aa30.02■■■□□ 2.4
CDX1-201ENST00000231656 MARF1Q9Y4F3 1742 aaKnown RBP30.02■■■□□ 2.4
CDX1-201ENST00000231656 PDE3BQ13370 1112 aa30.02■■■□□ 2.4
CDX1-201ENST00000231656 AATKQ6ZMQ8 1374 aa30.01■■■□□ 2.4
CDX1-201ENST00000231656 NLRP6P59044 892 aa30.01■■■□□ 2.39
CDX1-201ENST00000231656 NPHP3Q7Z494 1330 aa30■■■□□ 2.39
CDX1-201ENST00000231656 DDX17Q92841 729 aaKnown RBP30■■■□□ 2.39
CDX1-201ENST00000231656 IRX6P78412 446 aaPredicted RBP29.99■■■□□ 2.39
CDX1-201ENST00000231656 NUTM2GQ5VZR2 741 aa29.98■■■□□ 2.39
CDX1-201ENST00000231656 ERICH6BQ5W0A0 696 aa29.98■■■□□ 2.39
CDX1-201ENST00000231656 POLKQ9UBT6 870 aa29.98■■■□□ 2.39
CDX1-201ENST00000231656 SHPRHQ149N8 1683 aa29.98■■■□□ 2.39
CDX1-201ENST00000231656 RNF123Q5XPI4 1314 aa29.98■■■□□ 2.39
CDX1-201ENST00000231656 SALL2Q9Y467 1007 aaPredicted RBP29.98■■■□□ 2.39
CDX1-201ENST00000231656 CFAP53Q96M91 514 aa29.96■■■□□ 2.39
CDX1-201ENST00000231656 PXDNQ92626 1479 aa29.95■■■□□ 2.38
CDX1-201ENST00000231656 ALS2Q96Q42 1657 aa29.94■■■□□ 2.38
CDX1-201ENST00000231656 RRS1Q15050 365 aaKnown RBP29.93■■■□□ 2.38
CDX1-201ENST00000231656 EMILIN1Q9Y6C2 1016 aa29.93■■■□□ 2.38
CDX1-201ENST00000231656 PNPLA6Q8IY17 1366 aa29.92■■■□□ 2.38
CDX1-201ENST00000231656 SBNO1A3KN83 1393 aa29.91■■■□□ 2.38
CDX1-201ENST00000231656 COL3A1P02461 1466 aaPredicted RBP29.91■■■□□ 2.38
CDX1-201ENST00000231656 PPM1GO15355 546 aaPredicted RBP29.9■■■□□ 2.38
CDX1-201ENST00000231656 SOX12O15370 315 aa29.9■■■□□ 2.38
CDX1-201ENST00000231656 LMOD2Q6P5Q4 547 aa29.9■■■□□ 2.38
CDX1-201ENST00000231656 PELP1Q8IZL8 1130 aaKnown RBP29.9■■■□□ 2.38
CDX1-201ENST00000231656 CDK12Q9NYV4 1490 aaPredicted RBP29.88■■■□□ 2.37
CDX1-201ENST00000231656 NHSL1Q5SYE7 1610 aa29.88■■■□□ 2.37
CDX1-201ENST00000231656 CDCA7LQ96GN5 454 aa29.87■■■□□ 2.37
CDX1-201ENST00000231656 TNS3Q68CZ2 1445 aa29.86■■■□□ 2.37
CDX1-201ENST00000231656 SOS2Q07890 1332 aaPredicted RBP29.85■■■□□ 2.37
CDX1-201ENST00000231656 ROBO1Q9Y6N7 1651 aa29.85■■■□□ 2.37
CDX1-201ENST00000231656 ZNF521Q96K83 1311 aa29.85■■■□□ 2.37
CDX1-201ENST00000231656 PEAK1Q9H792 1746 aa29.84■■■□□ 2.37
CDX1-201ENST00000231656 SPATA31A3Q5VYP0 1347 aa29.84■■■□□ 2.37
CDX1-201ENST00000231656 MAP3K19Q56UN5 1328 aa29.83■■■□□ 2.37
CDX1-201ENST00000231656 SLIT3O75094 1523 aa29.83■■■□□ 2.37
CDX1-201ENST00000231656 USP19O94966 1318 aa29.83■■■□□ 2.37
CDX1-201ENST00000231656 NFAT5O94916 1531 aa29.82■■■□□ 2.36
CDX1-201ENST00000231656 DIAPH1O60610 1272 aaKnown RBP29.82■■■□□ 2.36
CDX1-201ENST00000231656 CCDC146Q8IYE0 955 aa29.82■■■□□ 2.36
CDX1-201ENST00000231656 KCNH5Q8NCM2 988 aa29.81■■■□□ 2.36
CDX1-201ENST00000231656 PPP4R2Q9NY27 417 aa29.8■■■□□ 2.36
CDX1-201ENST00000231656 LTN1O94822 1766 aa29.79■■■□□ 2.36
CDX1-201ENST00000231656 ARHGEF10O15013 1369 aa29.79■■■□□ 2.36
CDX1-201ENST00000231656 MED1Q15648 1581 aaPredicted RBP29.78■■■□□ 2.36
CDX1-201ENST00000231656 GCP02774 474 aa29.78■■■□□ 2.36
CDX1-201ENST00000231656 TOM1O60784 492 aa29.77■■■□□ 2.36
CDX1-201ENST00000231656 RCAN3Q9UKA8 241 aa29.77■■■□□ 2.36
CDX1-201ENST00000231656 IQSEC2Q5JU85 1478 aa29.76■■■□□ 2.35
CDX1-201ENST00000231656 FLT4P35916 1363 aa29.76■■■□□ 2.35
CDX1-201ENST00000231656 PLEKHG5O94827 1062 aa29.76■■■□□ 2.35
CDX1-201ENST00000231656 KIF24Q5T7B8 1368 aa29.75■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms