RNA–Protein interactions for RNA: ENST00000228251.8

YBX3-201, Transcript of Y-box binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene YBX3, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-201ENST00000228251 WDR63Q8IWG1 891 aa25.06■■□□□ 1.6
YBX3-201ENST00000228251 LTKP29376 864 aa25.05■■□□□ 1.6
YBX3-201ENST00000228251 PLEKHF1Q96S99 279 aa25.05■■□□□ 1.6
YBX3-201ENST00000228251 NRKQ7Z2Y5 1582 aa25.03■■□□□ 1.6
YBX3-201ENST00000228251 U2AF1L5P0DN76 240 aaPredicted RBP25.03■■□□□ 1.6
YBX3-201ENST00000228251 U2AF1Q01081 240 aaKnown RBP eCLIP25.03■■□□□ 1.63e-16■■□□□ 13.9
YBX3-201ENST00000228251 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.02■■□□□ 1.6
YBX3-201ENST00000228251 RRP7AQ9Y3A4 280 aaKnown RBP25.02■■□□□ 1.6
YBX3-201ENST00000228251 CEBPAP49715 358 aaPredicted RBP25.01■■□□□ 1.59
YBX3-201ENST00000228251 PTPRUQ92729 1446 aa25.01■■□□□ 1.59
YBX3-201ENST00000228251 NUDT16Q96DE0 195 aaKnown RBP25■■□□□ 1.59
YBX3-201ENST00000228251 PRR36Q9H6K5 1346 aa24.99■■□□□ 1.59
YBX3-201ENST00000228251 DIP2AQ14689 1571 aa24.99■■□□□ 1.59
YBX3-201ENST00000228251 BCAR3O75815 825 aa24.98■■□□□ 1.59
YBX3-201ENST00000228251 CCDC61Q9Y6R9 512 aa24.98■■□□□ 1.59
YBX3-201ENST00000228251 KDM2BQ8NHM5 1336 aa24.97■■□□□ 1.59
YBX3-201ENST00000228251 LRRC7Q96NW7 1537 aa24.97■■□□□ 1.59
YBX3-201ENST00000228251 NEUROD2Q15784 382 aa24.96■■□□□ 1.59
YBX3-201ENST00000228251 POLKQ9UBT6 870 aa24.96■■□□□ 1.59
YBX3-201ENST00000228251 AATKQ6ZMQ8 1374 aa24.96■■□□□ 1.59
YBX3-201ENST00000228251 CDK12Q9NYV4 1490 aaPredicted RBP24.95■■□□□ 1.59
YBX3-201ENST00000228251 XRN1Q8IZH2 1706 aaKnown RBP24.95■■□□□ 1.58
YBX3-201ENST00000228251 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.95■■□□□ 1.58
YBX3-201ENST00000228251 DIAPH1O60610 1272 aaKnown RBP24.94■■□□□ 1.58
YBX3-201ENST00000228251 NCKAP5LQ9HCH0 1330 aa24.93■■□□□ 1.58
YBX3-201ENST00000228251 PTCH1Q13635 1447 aa24.93■■□□□ 1.58
YBX3-201ENST00000228251 TMPOP42166 694 aaKnown RBP24.92■■□□□ 1.58
YBX3-201ENST00000228251 NALCNQ8IZF0 1738 aa24.92■■□□□ 1.58
YBX3-201ENST00000228251 TCERG1O14776 1098 aaKnown RBP24.91■■□□□ 1.58
YBX3-201ENST00000228251 U2SURPO15042 1029 aaKnown RBP24.91■■□□□ 1.58
YBX3-201ENST00000228251 TRIM35Q9UPQ4 493 aa24.91■■□□□ 1.58
YBX3-201ENST00000228251 PDE3AQ14432 1141 aa24.9■■□□□ 1.58
YBX3-201ENST00000228251 NME9Q86XW9 330 aa24.9■■□□□ 1.58
YBX3-201ENST00000228251 RIMS1Q86UR5 1692 aaKnown RBP24.9■■□□□ 1.58
YBX3-201ENST00000228251 MSH5O43196 834 aa24.9■■□□□ 1.58
YBX3-201ENST00000228251 RARSP54136 660 aaKnown RBP24.9■■□□□ 1.58
YBX3-201ENST00000228251 TBX22Q9Y458 520 aa24.9■■□□□ 1.58
YBX3-201ENST00000228251 ZNF692Q9BU19 519 aaPredicted RBP24.88■■□□□ 1.57
YBX3-201ENST00000228251 EID1Q9Y6B2 187 aa24.88■■□□□ 1.57
YBX3-201ENST00000228251 FBLN1P23142 703 aa24.88■■□□□ 1.57
YBX3-201ENST00000228251 MYH16Q9H6N6 1097 aa24.88■■□□□ 1.57
YBX3-201ENST00000228251 CEP170BQ9Y4F5 1589 aaPredicted RBP24.87■■□□□ 1.57
YBX3-201ENST00000228251 IL16Q14005 1332 aa24.87■■□□□ 1.57
YBX3-201ENST00000228251 FCHSD2O94868 740 aa24.87■■□□□ 1.57
YBX3-201ENST00000228251 MS4A1P11836 297 aa24.87■■□□□ 1.57
YBX3-201ENST00000228251 PLEKHG3A1L390 1219 aa24.86■■□□□ 1.57
YBX3-201ENST00000228251 RSPH6AQ9H0K4 717 aa24.86■■□□□ 1.57
YBX3-201ENST00000228251 ZRANB1Q9UGI0 708 aa24.86■■□□□ 1.57
YBX3-201ENST00000228251 SLC26A8Q96RN1 970 aa24.85■■□□□ 1.57
YBX3-201ENST00000228251 SSH2Q76I76 1423 aa24.85■■□□□ 1.57
YBX3-201ENST00000228251 CENPQQ7L2Z9 268 aaPredicted RBP24.85■■□□□ 1.57
YBX3-201ENST00000228251 MAPK8IP3Q9UPT6 1336 aa24.84■■□□□ 1.57
YBX3-201ENST00000228251 OVOS2A0A0J9YW53 1432 aa24.84■■□□□ 1.57
YBX3-201ENST00000228251 OVOS2Q6IE36 1432 aa24.84■■□□□ 1.57
YBX3-201ENST00000228251 ZNF142P52746 1687 aaPredicted RBP24.84■■□□□ 1.57
YBX3-201ENST00000228251 THEMISQ8N1K5 641 aaPredicted RBP24.84■■□□□ 1.57
YBX3-201ENST00000228251 PNNQ9H307 717 aaKnown RBP24.84■■□□□ 1.57
YBX3-201ENST00000228251 EMILIN1Q9Y6C2 1016 aa24.83■■□□□ 1.57
YBX3-201ENST00000228251 CT47B1P0C2W7 299 aaPredicted RBP24.82■■□□□ 1.56
YBX3-201ENST00000228251 IL13P35225 146 aa24.82■■□□□ 1.56
YBX3-201ENST00000228251 RGPD8O14715 1765 aaPredicted RBP24.82■■□□□ 1.56
YBX3-201ENST00000228251 USP6P35125 1406 aa24.82■■□□□ 1.56
YBX3-201ENST00000228251 COG3Q96JB2 828 aa24.8■■□□□ 1.56
YBX3-201ENST00000228251 AMOTL2Q9Y2J4 779 aa24.8■■□□□ 1.56
YBX3-201ENST00000228251 DLG5Q8TDM6 1919 aa24.8■■□□□ 1.56
YBX3-201ENST00000228251 TTC21BQ7Z4L5 1316 aa24.79■■□□□ 1.56
YBX3-201ENST00000228251 ACEP12821 1306 aa24.79■■□□□ 1.56
YBX3-201ENST00000228251 ADAMTSL3P82987 1691 aa24.79■■□□□ 1.56
YBX3-201ENST00000228251 PEAK1Q9H792 1746 aa24.78■■□□□ 1.56
YBX3-201ENST00000228251 RIPK4P57078 832 aa24.77■■□□□ 1.56
YBX3-201ENST00000228251 PIK3R4Q99570 1358 aa24.77■■□□□ 1.56
YBX3-201ENST00000228251 RGPD1P0DJD0 1748 aa24.77■■□□□ 1.56
YBX3-201ENST00000228251 PRKAR2BP31323 418 aa24.76■■□□□ 1.55
YBX3-201ENST00000228251 PANK1Q8TE04 598 aa24.76■■□□□ 1.55
YBX3-201ENST00000228251 USP31Q70CQ4 1352 aa24.76■■□□□ 1.55
YBX3-201ENST00000228251 FMN2Q9NZ56 1722 aa24.76■■□□□ 1.55
YBX3-201ENST00000228251 TSR2Q969E8 191 aaKnown RBP24.75■■□□□ 1.55
YBX3-201ENST00000228251 BACH2Q9BYV9 841 aa24.75■■□□□ 1.55
YBX3-201ENST00000228251 CHD2O14647 1828 aaKnown RBP24.75■■□□□ 1.55
YBX3-201ENST00000228251 PPM1GO15355 546 aaPredicted RBP24.74■■□□□ 1.55
YBX3-201ENST00000228251 PDE4AP27815 886 aa24.74■■□□□ 1.55
YBX3-201ENST00000228251 SKAP1Q86WV1 359 aa24.74■■□□□ 1.55
YBX3-201ENST00000228251 ANP32EQ9BTT0 268 aa24.73■■□□□ 1.55
YBX3-201ENST00000228251 USP54Q70EL1 1684 aa24.73■■□□□ 1.55
YBX3-201ENST00000228251 RLBP1P12271 317 aa24.72■■□□□ 1.55
YBX3-201ENST00000228251 EXOSC9Q06265 439 aaKnown RBP24.72■■□□□ 1.55
YBX3-201ENST00000228251 AAMPQ13685 434 aa24.72■■□□□ 1.55
YBX3-201ENST00000228251 PHACTR3Q96KR7 559 aa24.72■■□□□ 1.55
YBX3-201ENST00000228251 RRS1Q15050 365 aaKnown RBP24.72■■□□□ 1.55
YBX3-201ENST00000228251 NFE2L2Q16236 605 aa24.72■■□□□ 1.55
YBX3-201ENST00000228251 CLUAP1Q96AJ1 413 aa24.72■■□□□ 1.55
YBX3-201ENST00000228251 ANKARQ7Z5J8 1434 aa24.71■■□□□ 1.55
YBX3-201ENST00000228251 TNNQ9UQP3 1299 aa24.71■■□□□ 1.55
YBX3-201ENST00000228251 COG6Q9Y2V7 657 aa24.71■■□□□ 1.55
YBX3-201ENST00000228251 MARF1Q9Y4F3 1742 aaKnown RBP24.71■■□□□ 1.55
YBX3-201ENST00000228251 PIK3C2AO00443 1686 aa24.7■■□□□ 1.55
YBX3-201ENST00000228251 FRAT1Q92837 279 aaPredicted RBP24.7■■□□□ 1.54
YBX3-201ENST00000228251 CANXP27824 592 aaKnown RBP24.69■■□□□ 1.54
YBX3-201ENST00000228251 HMOX1P09601 288 aa24.68■■□□□ 1.54
YBX3-201ENST00000228251 PLPPR3Q6T4P5 718 aa24.68■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 446 ms