RNA–Protein interactions for RNA: ENST00000221922.10

CCDC9-201, Transcript of coiled-coil domain containing 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC9, Length 2,093 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-201ENST00000221922 CCDC27Q2M243 656 aa28.78■■■□□ 2.2
CCDC9-201ENST00000221922 TCP11L2Q8N4U5 519 aa28.78■■■□□ 2.2
CCDC9-201ENST00000221922 PHF23Q9BUL5 403 aaPredicted RBP28.78■■■□□ 2.2
CCDC9-201ENST00000221922 DMRT2Q9Y5R5 561 aa28.77■■■□□ 2.2
CCDC9-201ENST00000221922 ADGRB2O60241 1585 aa28.77■■■□□ 2.2
CCDC9-201ENST00000221922 SKAP1Q86WV1 359 aa28.76■■■□□ 2.19
CCDC9-201ENST00000221922 WDR63Q8IWG1 891 aa28.76■■■□□ 2.19
CCDC9-201ENST00000221922 TXNDC2Q86VQ3 553 aa28.76■■■□□ 2.19
CCDC9-201ENST00000221922 CPSF1Q10570 1443 aaKnown RBP28.75■■■□□ 2.19
CCDC9-201ENST00000221922 SLIT1O75093 1534 aa28.74■■■□□ 2.19
CCDC9-201ENST00000221922 PPIP5K1Q6PFW1 1433 aa28.73■■■□□ 2.19
CCDC9-201ENST00000221922 CDC42BPGQ6DT37 1551 aa28.73■■■□□ 2.19
CCDC9-201ENST00000221922 ARHGAP23Q9P227 1491 aa28.72■■■□□ 2.19
CCDC9-201ENST00000221922 RTL5Q5HYW3 569 aaPredicted RBP28.72■■■□□ 2.19
CCDC9-201ENST00000221922 EDC4Q6P2E9 1401 aaKnown RBP28.71■■■□□ 2.19
CCDC9-201ENST00000221922 MON2Q7Z3U7 1717 aa28.71■■■□□ 2.19
CCDC9-201ENST00000221922 U2AF1L5P0DN76 240 aaPredicted RBP28.71■■■□□ 2.19
CCDC9-201ENST00000221922 U2AF1Q01081 240 aaKnown RBP eCLIP28.71■■■□□ 2.19
CCDC9-201ENST00000221922 PNPLA6Q8IY17 1366 aa28.71■■■□□ 2.19
CCDC9-201ENST00000221922 CEBPAP49715 358 aaPredicted RBP28.7■■■□□ 2.19
CCDC9-201ENST00000221922 BCAR3O75815 825 aa28.7■■■□□ 2.18
CCDC9-201ENST00000221922 LTKP29376 864 aa28.7■■■□□ 2.18
CCDC9-201ENST00000221922 NEUROD2Q15784 382 aa28.69■■■□□ 2.18
CCDC9-201ENST00000221922 RRP7AQ9Y3A4 280 aaKnown RBP28.69■■■□□ 2.18
CCDC9-201ENST00000221922 DDRGK1Q96HY6 314 aa28.68■■■□□ 2.18
CCDC9-201ENST00000221922 ROBO2Q9HCK4 1378 aa28.68■■■□□ 2.18
CCDC9-201ENST00000221922 AKAP12Q02952 1782 aa28.68■■■□□ 2.18
CCDC9-201ENST00000221922 PDE3AQ14432 1141 aa28.68■■■□□ 2.18
CCDC9-201ENST00000221922 ITSN1Q15811 1721 aa28.66■■■□□ 2.18
CCDC9-201ENST00000221922 NUDT16Q96DE0 195 aaKnown RBP28.66■■■□□ 2.18
CCDC9-201ENST00000221922 EID1Q9Y6B2 187 aa28.65■■■□□ 2.18
CCDC9-201ENST00000221922 CCDC61Q9Y6R9 512 aa28.65■■■□□ 2.18
CCDC9-201ENST00000221922 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.64■■■□□ 2.18
CCDC9-201ENST00000221922 MYH16Q9H6N6 1097 aa28.63■■■□□ 2.17
CCDC9-201ENST00000221922 FAM161AQ3B820 660 aa28.62■■■□□ 2.17
CCDC9-201ENST00000221922 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.62■■■□□ 2.17
CCDC9-201ENST00000221922 USP35Q9P2H5 1018 aa28.62■■■□□ 2.17
CCDC9-201ENST00000221922 TOPAZ1Q8N9V7 1692 aa28.62■■■□□ 2.17
CCDC9-201ENST00000221922 DIP2AQ14689 1571 aa28.62■■■□□ 2.17
CCDC9-201ENST00000221922 PLEKHF1Q96S99 279 aa28.61■■■□□ 2.17
CCDC9-201ENST00000221922 CANXP27824 592 aaKnown RBP28.6■■■□□ 2.17
CCDC9-201ENST00000221922 DIAPH1O60610 1272 aaKnown RBP28.6■■■□□ 2.17
CCDC9-201ENST00000221922 C8orf34Q49A92 452 aa28.6■■■□□ 2.17
CCDC9-201ENST00000221922 U2SURPO15042 1029 aaKnown RBP28.59■■■□□ 2.17
CCDC9-201ENST00000221922 PTPRUQ92729 1446 aa28.59■■■□□ 2.17
CCDC9-201ENST00000221922 PPM1GO15355 546 aaPredicted RBP28.58■■■□□ 2.17
CCDC9-201ENST00000221922 MAP2P11137 1827 aaKnown RBP28.58■■■□□ 2.17
CCDC9-201ENST00000221922 RARSP54136 660 aaKnown RBP28.58■■■□□ 2.17
CCDC9-201ENST00000221922 PNNQ9H307 717 aaKnown RBP28.58■■■□□ 2.17
CCDC9-201ENST00000221922 PRR36Q9H6K5 1346 aa28.57■■■□□ 2.16
CCDC9-201ENST00000221922 THEMISQ8N1K5 641 aaPredicted RBP28.56■■■□□ 2.16
CCDC9-201ENST00000221922 POLKQ9UBT6 870 aa28.56■■■□□ 2.16
CCDC9-201ENST00000221922 MAPK8IP3Q9UPT6 1336 aa28.56■■■□□ 2.16
CCDC9-201ENST00000221922 AATKQ6ZMQ8 1374 aa28.56■■■□□ 2.16
CCDC9-201ENST00000221922 ZNF692Q9BU19 519 aaPredicted RBP28.55■■■□□ 2.16
CCDC9-201ENST00000221922 TBX22Q9Y458 520 aa28.55■■■□□ 2.16
CCDC9-201ENST00000221922 PTCH1Q13635 1447 aa28.55■■■□□ 2.16
CCDC9-201ENST00000221922 AAMPQ13685 434 aa28.55■■■□□ 2.16
CCDC9-201ENST00000221922 LAS1LQ9Y4W2 734 aaKnown RBP28.55■■■□□ 2.16
CCDC9-201ENST00000221922 NRKQ7Z2Y5 1582 aa28.54■■■□□ 2.16
CCDC9-201ENST00000221922 CDK12Q9NYV4 1490 aaPredicted RBP28.54■■■□□ 2.16
CCDC9-201ENST00000221922 CT47B1P0C2W7 299 aaPredicted RBP28.54■■■□□ 2.16
CCDC9-201ENST00000221922 NME9Q86XW9 330 aa28.52■■■□□ 2.16
CCDC9-201ENST00000221922 SLC26A8Q96RN1 970 aa28.52■■■□□ 2.16
CCDC9-201ENST00000221922 NCKAP5LQ9HCH0 1330 aa28.52■■■□□ 2.16
CCDC9-201ENST00000221922 TMPOP42166 694 aaKnown RBP28.52■■■□□ 2.16
CCDC9-201ENST00000221922 NEFMP07197 916 aa28.51■■■□□ 2.15
CCDC9-201ENST00000221922 LRRC7Q96NW7 1537 aa28.51■■■□□ 2.15
CCDC9-201ENST00000221922 CLUAP1Q96AJ1 413 aa28.49■■■□□ 2.15
CCDC9-201ENST00000221922 CEP170BQ9Y4F5 1589 aaPredicted RBP28.49■■■□□ 2.15
CCDC9-201ENST00000221922 XRN1Q8IZH2 1706 aaKnown RBP28.49■■■□□ 2.15
CCDC9-201ENST00000221922 IL16Q14005 1332 aa28.49■■■□□ 2.15
CCDC9-201ENST00000221922 FCHSD2O94868 740 aa28.49■■■□□ 2.15
CCDC9-201ENST00000221922 FRAT1Q92837 279 aaPredicted RBP28.49■■■□□ 2.15
CCDC9-201ENST00000221922 COG3Q96JB2 828 aa28.48■■■□□ 2.15
CCDC9-201ENST00000221922 PLEKHG3A1L390 1219 aa28.47■■■□□ 2.15
CCDC9-201ENST00000221922 PANK1Q8TE04 598 aa28.47■■■□□ 2.15
CCDC9-201ENST00000221922 VIRMAQ69YN4 1812 aaKnown RBP28.47■■■□□ 2.15
CCDC9-201ENST00000221922 AMOTL2Q9Y2J4 779 aa28.47■■■□□ 2.15
CCDC9-201ENST00000221922 IGHDP01880 384 aa28.46■■■□□ 2.15
CCDC9-201ENST00000221922 RGS3P49796 1198 aa28.46■■■□□ 2.15
CCDC9-201ENST00000221922 TRIM35Q9UPQ4 493 aa28.46■■■□□ 2.15
CCDC9-201ENST00000221922 COG6Q9Y2V7 657 aa28.46■■■□□ 2.15
CCDC9-201ENST00000221922 PLPPR3Q6T4P5 718 aa28.45■■■□□ 2.14
CCDC9-201ENST00000221922 RIMS1Q86UR5 1692 aaKnown RBP28.45■■■□□ 2.14
CCDC9-201ENST00000221922 FBLN1P23142 703 aa28.44■■■□□ 2.14
CCDC9-201ENST00000221922 RSPH6AQ9H0K4 717 aa28.43■■■□□ 2.14
CCDC9-201ENST00000221922 ZRANB1Q9UGI0 708 aa28.43■■■□□ 2.14
CCDC9-201ENST00000221922 EMILIN1Q9Y6C2 1016 aa28.42■■■□□ 2.14
CCDC9-201ENST00000221922 USP6P35125 1406 aa28.42■■■□□ 2.14
CCDC9-201ENST00000221922 ACEP12821 1306 aa28.41■■■□□ 2.14
CCDC9-201ENST00000221922 PIK3R4Q99570 1358 aa28.41■■■□□ 2.14
CCDC9-201ENST00000221922 NALCNQ8IZF0 1738 aa28.4■■■□□ 2.14
CCDC9-201ENST00000221922 RIPK4P57078 832 aa28.4■■■□□ 2.14
CCDC9-201ENST00000221922 TTC21BQ7Z4L5 1316 aa28.4■■■□□ 2.14
CCDC9-201ENST00000221922 ZNF142P52746 1687 aaPredicted RBP28.4■■■□□ 2.14
CCDC9-201ENST00000221922 IL13P35225 146 aa28.39■■■□□ 2.14
CCDC9-201ENST00000221922 OVOS2A0A0J9YW53 1432 aa28.39■■■□□ 2.14
CCDC9-201ENST00000221922 OVOS2Q6IE36 1432 aa28.39■■■□□ 2.14
CCDC9-201ENST00000221922 PMFBP1Q8TBY8 1022 aa28.38■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms