RNA–Protein interactions for RNA: ENST00000212355.8

TGFBR3-201, Transcript of transforming growth factor beta receptor 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TGFBR3, Length 6,465 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TGFBR3-201ENST00000212355 SAFBQ15424 915 aaKnown RBP eCLIP16.35■□□□□ 0.21
TGFBR3-201ENST00000212355 TEX35Q5T0J7 233 aa16.35■□□□□ 0.21
TGFBR3-201ENST00000212355 PRAM1Q96QH2 718 aa16.35■□□□□ 0.21
TGFBR3-201ENST00000212355 EPS15P42566 896 aa16.35■□□□□ 0.21
TGFBR3-201ENST00000212355 ATP2B2Q01814 1243 aa16.34■□□□□ 0.21
TGFBR3-201ENST00000212355 RRS1Q15050 365 aaKnown RBP16.34■□□□□ 0.21
TGFBR3-201ENST00000212355 CCDC47Q96A33 483 aaKnown RBP16.34■□□□□ 0.21
TGFBR3-201ENST00000212355 HOOK1Q9UJC3 728 aaKnown RBP16.34■□□□□ 0.21
TGFBR3-201ENST00000212355 AEBP2Q6ZN18 517 aaPredicted RBP16.34■□□□□ 0.21
TGFBR3-201ENST00000212355 CNKSR2Q8WXI2 1034 aa16.34■□□□□ 0.21
TGFBR3-201ENST00000212355 PHF23Q9BUL5 403 aaPredicted RBP16.34■□□□□ 0.21
TGFBR3-201ENST00000212355 LRRFIP1Q32MZ4 808 aaKnown RBP16.34■□□□□ 0.21
TGFBR3-201ENST00000212355 NBPF8Q3BBV2 869 aa16.34■□□□□ 0.21
TGFBR3-201ENST00000212355 CT47A1Q5JQC4 288 aaPredicted RBP16.34■□□□□ 0.21
TGFBR3-201ENST00000212355 CCDC39Q9UFE4 941 aa16.34■□□□□ 0.21
TGFBR3-201ENST00000212355 MRE11P49959 708 aa16.32■□□□□ 0.2
TGFBR3-201ENST00000212355 NINLQ9Y2I6 1382 aa16.32■□□□□ 0.2
TGFBR3-201ENST00000212355 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.32■□□□□ 0.2
TGFBR3-201ENST00000212355 KIF21BO75037 1637 aa16.32■□□□□ 0.2
TGFBR3-201ENST00000212355 SULT6B1Q6IMI4 303 aa16.31■□□□□ 0.2
TGFBR3-201ENST00000212355 IL1RAPL2Q9NP60 686 aa16.31■□□□□ 0.2
TGFBR3-201ENST00000212355 HSP90AB2PQ58FF8 381 aa16.31■□□□□ 0.2
TGFBR3-201ENST00000212355 LARP6Q9BRS8 491 aaKnown RBP16.31■□□□□ 0.2
TGFBR3-201ENST00000212355 CWC22Q9HCG8 908 aaKnown RBP16.31■□□□□ 0.2
TGFBR3-201ENST00000212355 PPP1R1BQ9UD71 204 aaPredicted RBP16.31■□□□□ 0.2
TGFBR3-201ENST00000212355 SMARCA5O60264 1052 aaPredicted RBP16.3■□□□□ 0.2
TGFBR3-201ENST00000212355 TTC39AQ5SRH9 613 aa16.3■□□□□ 0.2
TGFBR3-201ENST00000212355 THUMPD2Q9BTF0 503 aaKnown RBP16.3■□□□□ 0.2
TGFBR3-201ENST00000212355 FGD5Q6ZNL6 1462 aa16.3■□□□□ 0.2
TGFBR3-201ENST00000212355 AQRO60306 1485 aaKnown RBP eCLIP16.29■□□□□ 0.24e-7■■■■□ 23.2
TGFBR3-201ENST00000212355 SMARCA4P51532 1647 aa16.29■□□□□ 0.2
TGFBR3-201ENST00000212355 ATF3P18847 181 aa16.29■□□□□ 0.2
TGFBR3-201ENST00000212355 CWC27Q6UX04 472 aaKnown RBP16.29■□□□□ 0.2
TGFBR3-201ENST00000212355 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.29■□□□□ 0.28e-7■■■■■ 191.4
TGFBR3-201ENST00000212355 CLASRPQ8N2M8 674 aaKnown RBP16.29■□□□□ 0.2
TGFBR3-201ENST00000212355 CABP1Q9NZU7 370 aa16.28■□□□□ 0.2
TGFBR3-201ENST00000212355 CAMK4Q16566 473 aa16.28■□□□□ 0.2
TGFBR3-201ENST00000212355 CCDC30Q5VVM6 783 aa16.28■□□□□ 0.2
TGFBR3-201ENST00000212355 ZHX3Q9H4I2 956 aa16.28■□□□□ 0.2
TGFBR3-201ENST00000212355 CNNM1Q9NRU3 951 aa16.28■□□□□ 0.2
TGFBR3-201ENST00000212355 NUTM1Q86Y26 1132 aa16.28■□□□□ 0.2
TGFBR3-201ENST00000212355 NUP133Q8WUM0 1156 aa16.28■□□□□ 0.2
TGFBR3-201ENST00000212355 OFD1O75665 1012 aa16.27■□□□□ 0.2
TGFBR3-201ENST00000212355 ARHGAP5Q13017 1502 aa16.27■□□□□ 0.2
TGFBR3-201ENST00000212355 FKBP4Q02790 459 aaKnown RBP eCLIP16.27■□□□□ 0.2
TGFBR3-201ENST00000212355 ODF2Q5BJF6 829 aa16.27■□□□□ 0.2
TGFBR3-201ENST00000212355 C20orf194Q5TEA3 1177 aa16.27■□□□□ 0.2
TGFBR3-201ENST00000212355 MYOM3Q5VTT5 1437 aa16.27■□□□□ 0.19
TGFBR3-201ENST00000212355 LRRC9Q6ZRR7 1453 aa16.27■□□□□ 0.19
TGFBR3-201ENST00000212355 AK7Q96M32 723 aa16.27■□□□□ 0.19
TGFBR3-201ENST00000212355 CDK19Q9BWU1 502 aa16.27■□□□□ 0.19
TGFBR3-201ENST00000212355 DCTN1Q14203 1278 aa16.26■□□□□ 0.19
TGFBR3-201ENST00000212355 TMX1Q9H3N1 280 aa16.26■□□□□ 0.19
TGFBR3-201ENST00000212355 ATAD2BQ9ULI0 1458 aa16.26■□□□□ 0.19
TGFBR3-201ENST00000212355 KINO60870 393 aaKnown RBP16.26■□□□□ 0.19
TGFBR3-201ENST00000212355 PSMA5P28066 241 aa16.26■□□□□ 0.19
TGFBR3-201ENST00000212355 FAM193AP78312 1265 aa16.26■□□□□ 0.19
TGFBR3-201ENST00000212355 CFTRP13569 1480 aa16.26■□□□□ 0.19
TGFBR3-201ENST00000212355 NUTM2BA6NNL0 878 aaPredicted RBP16.26■□□□□ 0.19
TGFBR3-201ENST00000212355 NUTM2EB1AL46 878 aaPredicted RBP16.26■□□□□ 0.19
TGFBR3-201ENST00000212355 NUTM2AQ8IVF1 878 aaPredicted RBP16.26■□□□□ 0.19
TGFBR3-201ENST00000212355 ANKRD50Q9ULJ7 1429 aa16.26■□□□□ 0.19
TGFBR3-201ENST00000212355 NCOA2Q15596 1464 aa16.26■□□□□ 0.19
TGFBR3-201ENST00000212355 GNAI2P04899 355 aa16.26■□□□□ 0.19
TGFBR3-201ENST00000212355 HSP90AB4PQ58FF6 505 aa16.26■□□□□ 0.19
TGFBR3-201ENST00000212355 PLCD4Q9BRC7 762 aa16.26■□□□□ 0.19
TGFBR3-201ENST00000212355 NAT10Q9H0A0 1025 aaKnown RBP16.25■□□□□ 0.19
TGFBR3-201ENST00000212355 BRD4O60885 1362 aaPredicted RBP16.25■□□□□ 0.19
TGFBR3-201ENST00000212355 DDX11Q96FC9 970 aa16.25■□□□□ 0.19
TGFBR3-201ENST00000212355 SERPINC1P01008 464 aa16.25■□□□□ 0.19
TGFBR3-201ENST00000212355 STK38Q15208 465 aa16.25■□□□□ 0.19
TGFBR3-201ENST00000212355 TMEM132AQ24JP5 1023 aa16.24■□□□□ 0.19
TGFBR3-201ENST00000212355 BRMS1Q9HCU9 246 aa16.24■□□□□ 0.19
TGFBR3-201ENST00000212355 ARGLU1Q9NWB6 273 aaPredicted RBP16.24■□□□□ 0.19
TGFBR3-201ENST00000212355 IGF1RP08069 1367 aa16.24■□□□□ 0.19
TGFBR3-201ENST00000212355 ME1P48163 572 aa16.24■□□□□ 0.19
TGFBR3-201ENST00000212355 PRDM10Q9NQV6 1147 aa16.24■□□□□ 0.19
TGFBR3-201ENST00000212355 GAPVD1Q14C86 1478 aa16.24■□□□□ 0.19
TGFBR3-201ENST00000212355 HDGFL1Q5TGJ6 251 aa16.24■□□□□ 0.19
TGFBR3-201ENST00000212355 BACH2Q9BYV9 841 aa16.24■□□□□ 0.19
TGFBR3-201ENST00000212355 PPFIA3O75145 1194 aa16.23■□□□□ 0.19
TGFBR3-201ENST00000212355 HSP90B2PQ58FF3 399 aa16.23■□□□□ 0.19
TGFBR3-201ENST00000212355 WDR97A6NE52 1622 aa16.23■□□□□ 0.19
TGFBR3-201ENST00000212355 IBSPP21815 317 aaPredicted RBP16.23■□□□□ 0.19
TGFBR3-201ENST00000212355 KIF6Q6ZMV9 814 aa16.23■□□□□ 0.19
TGFBR3-201ENST00000212355 BICDL1Q6ZP65 573 aa16.23■□□□□ 0.19
TGFBR3-201ENST00000212355 AACSQ86V21 672 aa16.23■□□□□ 0.19
TGFBR3-201ENST00000212355 TNMDQ9H2S6 317 aa16.23■□□□□ 0.19
TGFBR3-201ENST00000212355 GRPEL1Q9HAV7 217 aa16.23■□□□□ 0.19
TGFBR3-201ENST00000212355 MAP7D2Q96T17 732 aa16.22■□□□□ 0.19
TGFBR3-201ENST00000212355 UQCRHLA0A096LP55 91 aa16.22■□□□□ 0.19
TGFBR3-201ENST00000212355 ERICH4A6NGS2 130 aa16.22■□□□□ 0.19
TGFBR3-201ENST00000212355 UQCRHP07919 91 aa16.22■□□□□ 0.19
TGFBR3-201ENST00000212355 LRRCC1Q9C099 1032 aa16.22■□□□□ 0.19
TGFBR3-201ENST00000212355 K7ELQ4 463 aaPredicted RBP16.22■□□□□ 0.19
TGFBR3-201ENST00000212355 CDK5RAP3Q96JB5 506 aa16.22■□□□□ 0.19
TGFBR3-201ENST00000212355 CHD1LQ86WJ1 897 aa16.21■□□□□ 0.19
TGFBR3-201ENST00000212355 AXDND1Q5T1B0 1012 aaPredicted RBP16.21■□□□□ 0.19
TGFBR3-201ENST00000212355 CENPHQ9H3R5 247 aa16.21■□□□□ 0.19
TGFBR3-201ENST00000212355 TBC1D2BQ9UPU7 963 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms