RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, human

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCN1A-222	ENST00000642141	STK40	Q8N2I9	435 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	GPT2	Q8TD30	523 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	CPA5	Q8WXQ8	436 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	DNASE2B	Q8WZ79	361 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	IGSF8	Q969P0	613 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	MYO19	Q96H55	970 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	RPRD1A	Q96P16	312 aa	Predicted RBP	10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	PRMT1	Q99873	361 aa	Known RBP	10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	ADAM33	Q9BZ11	813 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	SLC32A1	Q9H598	525 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	TMPRSS4	Q9NRS4	437 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	KIAA1522	Q9P206	1035 aa	Predicted RBP	10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	SERGEF	Q9UGK8	458 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	DACH1	Q9UI36	760 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	VANGL2	Q9ULK5	521 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	PCDHGC3	Q9UN70	934 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	NFE2L3	Q9Y4A8	694 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141		A0A1W2PP55	124 aa		10.62	□□□□□ -0.71
SCN1A-222	ENST00000642141	PLK4	O00444	970 aa		10.62	□□□□□ -0.71
SCN1A-222	ENST00000642141	PAGE1	O75459	146 aa		10.62	□□□□□ -0.71
SCN1A-222	ENST00000642141	RNASEH2A	O75792	299 aa	Known RBP	10.62	□□□□□ -0.71
SCN1A-222	ENST00000642141	MOCS3	O95396	460 aa		10.62	□□□□□ -0.71
SCN1A-222	ENST00000642141	ADCY5	O95622	1261 aa		10.62	□□□□□ -0.71
SCN1A-222	ENST00000642141	IGLV3-19	P01714	112 aa		10.62	□□□□□ -0.71
SCN1A-222	ENST00000642141	MME	P08473	750 aa		10.62	□□□□□ -0.71
SCN1A-222	ENST00000642141	CYP11B1	P15538	503 aa		10.62	□□□□□ -0.71
SCN1A-222	ENST00000642141	PSMD8	P48556	350 aa		10.62	□□□□□ -0.71
SCN1A-222	ENST00000642141	BNC1	Q01954	994 aa		10.62	□□□□□ -0.71
SCN1A-222	ENST00000642141	EIF4EBP2	Q13542	120 aa	Predicted RBP	10.62	□□□□□ -0.71
SCN1A-222	ENST00000642141	AUH	Q13825	339 aa	Known RBP	10.62	□□□□□ -0.71
SCN1A-222	ENST00000642141	ST3GAL2	Q16842	350 aa		10.62	□□□□□ -0.71
SCN1A-222	ENST00000642141	HNRNPA1L2	Q32P51	320 aa	Known RBP	10.62	□□□□□ -0.71
SCN1A-222	ENST00000642141	POM121L1P	Q3SYA9	428 aa		10.62	□□□□□ -0.71
SCN1A-222	ENST00000642141	ACCSL	Q4AC99	568 aa		10.62	□□□□□ -0.71
SCN1A-222	ENST00000642141	NOP9	Q86U38	636 aa	Known RBP	10.62	□□□□□ -0.71
SCN1A-222	ENST00000642141	OR52K2	Q8NGK3	314 aa		10.62	□□□□□ -0.71
SCN1A-222	ENST00000642141	BIRC7	Q96CA5	298 aa		10.62	□□□□□ -0.71
SCN1A-222	ENST00000642141	OMD	Q99983	421 aa		10.62	□□□□□ -0.71
SCN1A-222	ENST00000642141	BTBD1	Q9H0C5	482 aa		10.62	□□□□□ -0.71
SCN1A-222	ENST00000642141	RSPH9	Q9H1X1	276 aa	Predicted RBP	10.62	□□□□□ -0.71
SCN1A-222	ENST00000642141	PABPC3	Q9H361	631 aa	Known RBP	10.62	□□□□□ -0.71
SCN1A-222	ENST00000642141	GAREM1	Q9H706	876 aa		10.62	□□□□□ -0.71
SCN1A-222	ENST00000642141	ANLN	Q9NQW6	1124 aa		10.62	□□□□□ -0.71
SCN1A-222	ENST00000642141	PIGV	Q9NUD9	493 aa		10.62	□□□□□ -0.71
SCN1A-222	ENST00000642141	FBXL12	Q9NXK8	326 aa		10.62	□□□□□ -0.71
SCN1A-222	ENST00000642141	SUSD2	Q9UGT4	822 aa		10.62	□□□□□ -0.71
SCN1A-222	ENST00000642141	HS3ST4	Q9Y661	456 aa		10.62	□□□□□ -0.71
SCN1A-222	ENST00000642141	PI4KA	P42356	2102 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	ACACB	O00763	2458 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	C1QTNF9B	B2RNN3	333 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141		I6L893	689 aa	Predicted RBP	10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	HYAL3	O43820	417 aa	Predicted RBP	10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	BNIP3L	O60238	219 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	RNASEH1	O60930	286 aa	Known RBP	10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	CNTN5	O94779	1100 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	GFPT2	O94808	682 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	ASL	P04424	464 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	GLI1	P08151	1106 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	C1QTNF9	P0C862	333 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	SLC2A3	P11169	496 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	UCHL3	P15374	230 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	ZNF18	P17022	549 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	SLC8A1	P32418	973 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	NOS2	P35228	1153 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	SULT1E1	P49888	294 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	METAP1	P53582	386 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	BPIFB4	P59827	614 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	ZNF177	Q13360	481 aa	Predicted RBP	10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	KRT31	Q15323	416 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	CST6	Q15828	149 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	HLA-B	Q31612	363 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	KCNT1	Q5JUK3	1230 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	RABGAP1L	Q5R372	815 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	FAM102A	Q5T9C2	384 aa	Predicted RBP	10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	OTUD1	Q5VV17	481 aa	Predicted RBP	10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	NAA35	Q5VZE5	725 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	ERICH1	Q86X53	443 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	PNPLA1	Q8N8W4	532 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	ZNF557	Q8N988	423 aa	Predicted RBP	10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	TMEM35B	Q8NCS4	154 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	SETD7	Q8WTS6	366 aa	Known RBP	10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	SLC20A1	Q8WUM9	679 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	C18orf8	Q96DM3	657 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	FAM129B	Q96TA1	746 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	TBCB	Q99426	244 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	SCNM1	Q9BWG6	230 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	NAA15	Q9BXJ9	866 aa	Known RBP	10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	IRX2	Q9BZI1	471 aa	Predicted RBP	10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	TKTL2	Q9H0I9	626 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	NEUROG2	Q9H2A3	272 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	TM9SF3	Q9HD45	589 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	NLRC4	Q9NPP4	1024 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	FAM207A	Q9NSI2	230 aa	Predicted RBP	10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	DNAAF2	Q9NVR5	837 aa	Known RBP	10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	FANCL	Q9NW38	375 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	FASTKD2	Q9NYY8	710 aa	Known RBP eCLIP	10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	NCKAP1	Q9Y2A7	1128 aa		10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	FNDC3A	Q9Y2H6	1198 aa	Known RBP	10.61	□□□□□ -0.71
SCN1A-222	ENST00000642141	ZBTB32	Q9Y2Y4	487 aa	Predicted RBP	10.61	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms