RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 TAS2R13Q9NYV9 303 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 RCOR1Q9UKL0 485 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 ERVW-1Q9UQF0 538 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 ERVK-11Q9UQG0 969 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 A0A087WWV3 80 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 GPR75-ASB3A0A0A6YYF3 556 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 CENPXA8MT69 81 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 ZNF862O60290 1169 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 CYB5AP00167 134 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 CNTFP26441 200 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 RPA1P27694 616 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 SLC7A2P52569 658 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 CBFBQ13951 182 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 FBXO33Q7Z6M2 555 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 TMEM132CQ8N3T6 1108 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 ZNF563Q8TA94 476 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 NACC2Q96BF6 587 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 CNBD2Q96M20 576 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 PPP1R10Q96QC0 940 aaKnown RBP6.25□□□□□ -1.41
SCN1A-217ENST00000637988 SLC12A4Q9UP95 1085 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 ELFN1P0C7U0 828 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 HSD17B3P37058 310 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 ATP12AP54707 1039 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 COX10Q12887 443 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 LRRC69Q6ZNQ3 347 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 TFAP2DQ7Z6R9 452 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 TAF8Q7Z7C8 310 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 EID3Q8N140 333 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 LEMD2Q8NC56 503 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 GFM2Q969S9 779 aaKnown RBP6.25□□□□□ -1.41
SCN1A-217ENST00000637988 THOC1Q96FV9 657 aaKnown RBP6.25□□□□□ -1.41
SCN1A-217ENST00000637988 TSPAN18Q96SJ8 248 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 EPB41L4BQ9H329 900 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 TRABDQ9H4I3 376 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 C11orf49Q9H6J7 331 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 RRAGDQ9NQL2 400 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-217ENST00000637988 TMEM63CQ9P1W3 806 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 MKL2Q9ULH7 1088 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 TRIM49BA6NDI0 452 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 FGF10O15520 208 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-217ENST00000637988 LSM8O95777 96 aaKnown RBP6.25□□□□□ -1.41
SCN1A-217ENST00000637988 VIPP01282 170 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 DGKAP23743 735 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 ALDH5A1P51649 535 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-217ENST00000637988 PLGLB1Q02325 96 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 ERMARDQ5T6L9 678 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 FBXO38Q6PIJ6 1188 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 HIST2H2ABQ8IUE6 130 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-217ENST00000637988 ZNF34Q8IZ26 560 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 MARCH10Q8NA82 808 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-217ENST00000637988 SMG7Q92540 1137 aaKnown RBP6.25□□□□□ -1.41
SCN1A-217ENST00000637988 RNFT2Q96EX2 444 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 HAPLN3Q96S86 360 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 C7orf25Q9BPX7 421 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 GTPBP2Q9BX10 602 aaKnown RBP6.25□□□□□ -1.41
SCN1A-217ENST00000637988 VANGL2Q9ULK5 521 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 DMTF1Q9Y222 760 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 PCDHA11Q9Y5I1 949 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 CLTCL1P53675 1640 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 CPA3P15088 417 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 RASA1P20936 1047 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 BEX3Q00994 111 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 EXOSC10Q01780 885 aaKnown RBP6.25□□□□□ -1.41
SCN1A-217ENST00000637988 CBWD6Q4V339 395 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 BROXQ5VW32 411 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 CXCL17Q6UXB2 119 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 RASSF6Q6ZTQ3 369 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 CORO2BQ9UQ03 480 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 CLUHO75153 1309 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 A0A096LPK6 155 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 PRODHO43272 600 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 TBL1XO60907 577 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 TMCC2O75069 709 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 OR6B1O95007 311 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 CATP04040 527 aaKnown RBP6.24□□□□□ -1.41
SCN1A-217ENST00000637988 CHGBP05060 677 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 TFPIP10646 304 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 LBPP18428 481 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 DHPSP49366 369 aaPredicted RBP6.24□□□□□ -1.41
SCN1A-217ENST00000637988 CCR3P51677 355 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 CSHL1Q14406 222 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 SLC44A4Q53GD3 710 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 CERCAMQ5T4B2 595 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 GPR142Q7Z601 462 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 C19orf18Q8NEA5 215 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 TSTD1Q8NFU3 115 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 KAT2BQ92831 832 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 POLR1EQ9GZS1 481 aaKnown RBP6.24□□□□□ -1.41
SCN1A-217ENST00000637988 PHPT1Q9NRX4 125 aaPredicted RBP6.24□□□□□ -1.41
SCN1A-217ENST00000637988 HPS5Q9UPZ3 1129 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 HCN4Q9Y3Q4 1203 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.24□□□□□ -1.41
SCN1A-217ENST00000637988 CFAP73A6NFT4 308 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 GRM6O15303 877 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 SLC28A2O43868 658 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 ZNF682O95780 498 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 CBX5P45973 191 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 CHRNB3Q05901 458 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 FAM71DQ8N9W8 422 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 AVL9Q8NBF6 648 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms