RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 PDE9AO76083 593 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 CCNE2O96020 404 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 MMP8P22894 467 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 KELP23276 732 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 IL13P35225 146 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 TRAPPC10P48553 1259 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 SCNN1DP51172 638 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 NDST2P52849 883 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 MPP2Q14168 576 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 GALNT3Q14435 633 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 SLC1A5Q15758 541 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 ZYXQ15942 572 aaKnown RBP5.86□□□□□ -1.47
SCN1A-216ENST00000637968 LDHAL6AQ6ZMR3 332 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 NECAB2Q7Z6G3 386 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 HPS6Q86YV9 775 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 SCUBE3Q8IX30 993 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 AADATQ8N5Z0 425 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 CCDC185Q8N715 623 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 BPIFB6Q8NFQ5 453 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 SPATA18Q8TC71 538 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 PNPT1Q8TCS8 783 aaKnown RBP5.86□□□□□ -1.47
SCN1A-216ENST00000637968 BTBD6Q96KE9 485 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 FAM111AQ96PZ2 611 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 CDRT15Q96T59 188 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 DPEP3Q9H4B8 488 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 ELOVL6Q9H5J4 265 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 ARMT1Q9H993 441 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 EHD3Q9NZN3 535 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 MLXQ9UH92 298 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 NAGPAQ9UK23 515 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 BAG5Q9UL15 447 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 GTPBP10A4D1E9 387 aaKnown RBP5.86□□□□□ -1.47
SCN1A-216ENST00000637968 GRM8O00222 908 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 MEN1O00255 615 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 SLC9A3R1O14745 358 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-216ENST00000637968 APOL3O95236 402 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 PDGFAP04085 211 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 HLA-FP30511 346 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 CASP3P42574 277 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 GALCP54803 685 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 PPP4CP60510 307 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 CLCA4Q14CN2 919 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 HES5Q5TA89 166 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 ALG1LQ6GMV1 187 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 EEPD1Q7L9B9 569 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 ATAD1Q8NBU5 361 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 SLC35G2Q8TBE7 412 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 SNAPC3Q92966 411 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 TESCQ96BS2 214 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 C1orf74Q96LT6 269 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 FAM213AQ9BRX8 229 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 TMEM121Q9BTD3 319 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 NUSAP1Q9BXS6 441 aaKnown RBP5.86□□□□□ -1.47
SCN1A-216ENST00000637968 ASPSCR1Q9BZE9 553 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 C8orf33Q9H7E9 229 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-216ENST00000637968 LRRC4CQ9HCJ2 640 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 ENTPD7Q9NQZ7 604 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 STAU2Q9NUL3 570 aaKnown RBP eCLIP5.86□□□□□ -1.47
SCN1A-216ENST00000637968 FNIP2Q9P278 1114 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 ITGA11Q9UKX5 1188 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 ESYT2A0FGR8 921 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 FAM92AA1XBS5 289 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 SYNCRIPO60506 623 aaKnown RBP5.85□□□□□ -1.47
SCN1A-216ENST00000637968 CSDE1O75534 798 aaKnown RBP5.85□□□□□ -1.47
SCN1A-216ENST00000637968 PROS1P07225 676 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 IMPDH1P20839 514 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 ME2P23368 584 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 CYP4F8P98187 520 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 EFR3AQ14156 821 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 ELOAQ14241 798 aaKnown RBP5.85□□□□□ -1.47
SCN1A-216ENST00000637968 C21orf62-AS1Q17RA5 79 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 TBRG1Q3YBR2 411 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 ARMCX4Q5H9R4 360 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 FAM209BQ5JX69 171 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 DPY19L3Q6ZPD9 716 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 BEND4Q6ZU67 534 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 BHLHE22Q8NFJ8 381 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-216ENST00000637968 C1orf54Q8WWF1 131 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 DCPSQ96C86 337 aaKnown RBP5.85□□□□□ -1.47
SCN1A-216ENST00000637968 PPP1R2P1Q96PQ5 205 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 KLF6Q99612 283 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-216ENST00000637968 SEMA6AQ9H2E6 1030 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 EPS8L2Q9H6S3 715 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 POLE4Q9NR33 117 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 GRHL1Q9NZI5 618 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 PFDN2Q9UHV9 154 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 CYTH4Q9UIA0 394 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 PRPF19Q9UMS4 504 aaKnown RBP5.85□□□□□ -1.47
SCN1A-216ENST00000637968 MAP3K2Q9Y2U5 619 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 CHD2O14647 1828 aaKnown RBP5.85□□□□□ -1.47
SCN1A-216ENST00000637968 E5RI56 91 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 H0Y858 1186 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 H0YIN7 160 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 RNF103O00237 685 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 ABHD2P08910 425 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 DLATP10515 647 aaKnown RBP5.85□□□□□ -1.47
SCN1A-216ENST00000637968 MAGP20916 626 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 ATP6V1E1P36543 226 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 TALDO1P37837 337 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 OPRL1P41146 370 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms