RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 METAP1P53582 386 aa15.1■□□□□ 0.01
CLN3-249ENST00000636685 STXBP4Q6ZWJ1 553 aa15.1■□□□□ 0.01
CLN3-249ENST00000636685 STK40Q8N2I9 435 aa15.1■□□□□ 0.01
CLN3-249ENST00000636685 ARL14Q8N4G2 192 aa15.1■□□□□ 0.01
CLN3-249ENST00000636685 XXYLT1Q8NBI6 393 aa15.1■□□□□ 0.01
CLN3-249ENST00000636685 ARRDC3Q96B67 414 aa15.1■□□□□ 0.01
CLN3-249ENST00000636685 LMLNQ96KR4 655 aa15.1■□□□□ 0.01
CLN3-249ENST00000636685 PSMG3-AS1Q96PY0 264 aa15.1■□□□□ 0.01
CLN3-249ENST00000636685 KLHL11Q9NVR0 708 aa15.1■□□□□ 0.01
CLN3-249ENST00000636685 INTS6Q9UL03 887 aaKnown RBP15.1■□□□□ 0.01
CLN3-249ENST00000636685 ZFC3H1O60293 1989 aaKnown RBP15.1■□□□□ 0.01
CLN3-249ENST00000636685 H3BQV1 296 aa15.09■□□□□ 0.01
CLN3-249ENST00000636685 RTN2O75298 545 aa15.09■□□□□ 0.01
CLN3-249ENST00000636685 BMP15O95972 392 aa15.09■□□□□ 0.01
CLN3-249ENST00000636685 ADH1BP00325 375 aa15.09■□□□□ 0.01
CLN3-249ENST00000636685 THEGLP0DJG4 465 aa15.09■□□□□ 0.01
CLN3-249ENST00000636685 ALPPL2P10696 532 aa15.09■□□□□ 0.01
CLN3-249ENST00000636685 SFTPCP11686 197 aa15.09■□□□□ 0.01
CLN3-249ENST00000636685 P4HA1P13674 534 aa15.09■□□□□ 0.01
CLN3-249ENST00000636685 C5AR1P21730 350 aa15.09■□□□□ 0.01
CLN3-249ENST00000636685 DRD3P35462 400 aa15.09■□□□□ 0.01
CLN3-249ENST00000636685 CTSOP43234 321 aaPredicted RBP15.09■□□□□ 0.01
CLN3-249ENST00000636685 YWHAGP61981 247 aaKnown RBP eCLIP15.09■□□□□ 0.01
CLN3-249ENST00000636685 KCNMA1Q12791 1236 aa15.09■□□□□ 0.01
CLN3-249ENST00000636685 TGIF1Q15583 401 aa15.09■□□□□ 0.01
CLN3-249ENST00000636685 IGFBP7Q16270 282 aa15.09■□□□□ 0.01
CLN3-249ENST00000636685 ADGRF1Q5T601 910 aa15.09■□□□□ 0.01
CLN3-249ENST00000636685 SPOPLQ6IQ16 392 aa15.09■□□□□ 0.01
CLN3-249ENST00000636685 RFWD3Q6PCD5 774 aa15.09■□□□□ 0.01
CLN3-249ENST00000636685 CCDC65Q8IXS2 484 aa15.09■□□□□ 0.01
CLN3-249ENST00000636685 MYOCQ99972 504 aa15.09■□□□□ 0.01
CLN3-249ENST00000636685 DUSP16Q9BY84 665 aa15.09■□□□□ 0.01
CLN3-249ENST00000636685 NLGN3Q9NZ94 848 aa15.09■□□□□ 0.01
CLN3-249ENST00000636685 STOML2Q9UJZ1 356 aa15.09■□□□□ 0.01
CLN3-249ENST00000636685 DMTF1Q9Y222 760 aa15.09■□□□□ 0.01
CLN3-249ENST00000636685 EDDM13A0A1B0GTR0 161 aa15.08■□□□□ 0
CLN3-249ENST00000636685 GOLGA6L7A0A1B0GV03 622 aa15.08■□□□□ 0
CLN3-249ENST00000636685 TARSL2A2RTX5 802 aaKnown RBP15.08■□□□□ 0
CLN3-249ENST00000636685 CPED1A4D0V7 1026 aa15.08■□□□□ 0
CLN3-249ENST00000636685 LRRIQ3A6PVS8 624 aaPredicted RBP15.08■□□□□ 0
CLN3-249ENST00000636685 K7ESM1 405 aa15.08■□□□□ 0
CLN3-249ENST00000636685 CASC3O15234 703 aaKnown RBP15.08■□□□□ 0
CLN3-249ENST00000636685 NOBOXO60393 691 aa15.08■□□□□ 0
CLN3-249ENST00000636685 PPFIA2O75334 1257 aa15.08■□□□□ 0
CLN3-249ENST00000636685 NEBLO76041 1014 aa15.08■□□□□ 0
CLN3-249ENST00000636685 IL1BP01584 269 aa15.08■□□□□ 0
CLN3-249ENST00000636685 C4BPAP04003 597 aaKnown RBP15.08■□□□□ 0
CLN3-249ENST00000636685 ASLP04424 464 aa15.08■□□□□ 0
CLN3-249ENST00000636685 ASPAP45381 313 aa15.08■□□□□ 0
CLN3-249ENST00000636685 INHBCP55103 352 aa15.08■□□□□ 0
CLN3-249ENST00000636685 ZNF445P59923 1031 aa15.08■□□□□ 0
CLN3-249ENST00000636685 ARID5BQ14865 1188 aa15.08■□□□□ 0
CLN3-249ENST00000636685 TBR1Q16650 682 aa15.08■□□□□ 0
CLN3-249ENST00000636685 CDKN3Q16667 212 aa15.08■□□□□ 0
CLN3-249ENST00000636685 CRTC1Q6UUV9 634 aa15.08■□□□□ 0
CLN3-249ENST00000636685 RBM44Q6ZP01 1051 aaKnown RBP15.08■□□□□ 0
CLN3-249ENST00000636685 PTRH1Q86Y79 214 aaKnown RBP15.08■□□□□ 0
CLN3-249ENST00000636685 ARHGAP18Q8N392 663 aa15.08■□□□□ 0
CLN3-249ENST00000636685 WDR36Q8NI36 951 aaKnown RBP15.08■□□□□ 0
CLN3-249ENST00000636685 NDRG1Q92597 394 aaKnown RBP15.08■□□□□ 0
CLN3-249ENST00000636685 GRAMD1AQ96CP6 724 aa15.08■□□□□ 0
CLN3-249ENST00000636685 PANK2Q9BZ23 570 aa15.08■□□□□ 0
CLN3-249ENST00000636685 STIM2Q9P246 746 aa15.08■□□□□ 0
CLN3-249ENST00000636685 SFMBT1Q9UHJ3 866 aa15.08■□□□□ 0
CLN3-249ENST00000636685 SLCO3A1Q9UIG8 710 aa15.08■□□□□ 0
CLN3-249ENST00000636685 ERVW-1Q9UQF0 538 aa15.08■□□□□ 0
CLN3-249ENST00000636685 UBE4BO95155 1302 aa15.08■□□□□ 0
CLN3-249ENST00000636685 DOPEY1Q5JWR5 2465 aa15.08■□□□□ 0
CLN3-249ENST00000636685 BLACEA4D250 179 aa15.07■□□□□ 0
CLN3-249ENST00000636685 PRAMEF26H0Y7S4 382 aa15.07■□□□□ 0
CLN3-249ENST00000636685 MZF1P28698 734 aaPredicted RBP15.07■□□□□ 0
CLN3-249ENST00000636685 NUDT1P36639 197 aa15.07■□□□□ 0
CLN3-249ENST00000636685 PPP1R26Q5T8A7 1209 aaPredicted RBP15.07■□□□□ 0
CLN3-249ENST00000636685 PIK3R6Q5UE93 754 aa15.07■□□□□ 0
CLN3-249ENST00000636685 GUSBP11Q6P575 273 aa15.07■□□□□ 0
CLN3-249ENST00000636685 MMS22LQ6ZRQ5 1243 aa15.07■□□□□ 0
CLN3-249ENST00000636685 EPM2AIP1Q7L775 607 aaPredicted RBP15.07■□□□□ 0
CLN3-249ENST00000636685 EFL1Q7Z2Z2 1120 aaKnown RBP15.07■□□□□ 0
CLN3-249ENST00000636685 MFN1Q8IWA4 741 aa15.07■□□□□ 0
CLN3-249ENST00000636685 NELFCDQ8IXH7 590 aa15.07■□□□□ 0
CLN3-249ENST00000636685 ZNF507Q8TCN5 953 aa15.07■□□□□ 0
CLN3-249ENST00000636685 CLIC6Q96NY7 704 aa15.07■□□□□ 0
CLN3-249ENST00000636685 NT5C1AQ9BXI3 368 aa15.07■□□□□ 0
CLN3-249ENST00000636685 EPN3Q9H201 632 aa15.07■□□□□ 0
CLN3-249ENST00000636685 USP29Q9HBJ7 922 aa15.07■□□□□ 0
CLN3-249ENST00000636685 EVA1BQ9NVM1 165 aa15.07■□□□□ 0
CLN3-249ENST00000636685 HBS1LQ9Y450 684 aaKnown RBP15.07■□□□□ 0
CLN3-249ENST00000636685 ABCA12Q86UK0 2595 aa15.07■□□□□ 0
CLN3-249ENST00000636685 ITPR2Q14571 2701 aa15.06■□□□□ 0
CLN3-249ENST00000636685 A0A087X0B3 334 aa15.06■□□□□ 0
CLN3-249ENST00000636685 ENO4A6NNW6 628 aa15.06■□□□□ 0
CLN3-249ENST00000636685 SCAMP1O15126 338 aa15.06■□□□□ 0
CLN3-249ENST00000636685 EIF3DO15371 548 aaKnown RBP eCLIP15.06■□□□□ 0
CLN3-249ENST00000636685 PLRG1O43660 514 aaKnown RBP15.06■□□□□ 0
CLN3-249ENST00000636685 SLFN14P0C7P3 912 aa15.06■□□□□ 0
CLN3-249ENST00000636685 TRIM21P19474 475 aaKnown RBP15.06■□□□□ 0
CLN3-249ENST00000636685 SLC6A4P31645 630 aa15.06■□□□□ 0
CLN3-249ENST00000636685 STAT6P42226 847 aa15.06■□□□□ 0
CLN3-249ENST00000636685 MLLT3P42568 568 aaPredicted RBP15.06■□□□□ 0
CLN3-249ENST00000636685 CLCA4Q14CN2 919 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms