RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 UBDO15205 165 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 GSTA4O15217 222 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 PAPSS1O43252 624 aaPredicted RBP11.27□□□□□ -0.61
CLN3-244ENST00000636147 VAPBO95292 243 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 CHRNGP07510 517 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 GJB1P08034 283 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 VDRP11473 427 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 CSE1LP55060 971 aaKnown RBP11.27□□□□□ -0.61
CLN3-244ENST00000636147 FASTKQ14296 549 aaKnown RBP11.27□□□□□ -0.61
CLN3-244ENST00000636147 CSHL1Q14406 222 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 MYLK3Q32MK0 819 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 DACT2Q5SW24 774 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 GK5Q6ZS86 529 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 RAB44Q7Z6P3 723 aaPredicted RBP11.27□□□□□ -0.61
CLN3-244ENST00000636147 KIAA2013Q8IYS2 634 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 PCYOX1LQ8NBM8 494 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 ADCY4Q8NFM4 1077 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 ACTRT2Q8TDY3 377 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 CRYGNQ8WXF5 182 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 LRTOMTQ8WZ04 291 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 CERS2Q96G23 380 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 RTKNQ9BST9 563 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 MTG1Q9BT17 334 aaPredicted RBP11.27□□□□□ -0.61
CLN3-244ENST00000636147 COQ10BQ9H8M1 238 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 AS3MTQ9HBK9 375 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 TIMMDC1Q9NPL8 285 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.27□□□□□ -0.61
CLN3-244ENST00000636147 FETUBQ9UGM5 382 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 SUN2Q9UH99 717 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 ACOT9Q9Y305 439 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 EEF2KO00418 725 aaKnown RBP11.27□□□□□ -0.61
CLN3-244ENST00000636147 RFPL1O75677 317 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 AOC1P19801 751 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 ACO1P21399 889 aaKnown RBP11.27□□□□□ -0.61
CLN3-244ENST00000636147 NR4A1P22736 598 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 WNT7BP56706 349 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 TPI1P60174 286 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 TGFB2P61812 414 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 PCSK7Q16549 785 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 ZIK1Q3SY52 487 aaPredicted RBP11.27□□□□□ -0.61
CLN3-244ENST00000636147 CCDC153Q494R4 210 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 LDLRAP1Q5SW96 308 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 DHFR2Q86XF0 187 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 RDM1Q8NG50 284 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 URGCPQ8TCY9 931 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 PKP2Q99959 881 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 NAT9Q9BTE0 207 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 CCDC106Q9BWC9 280 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 ST6GALNAC4Q9H4F1 302 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 RMI1Q9H9A7 625 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 SYBUQ9NX95 663 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 TAF1P21675 1872 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 PMPCBO75439 489 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 BCL10O95999 233 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 ALBP02768 609 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 C2P06681 752 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 ETV4P43268 484 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 ENTPD1P49961 510 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 RBP5P82980 135 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 POU6F1Q14863 301 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 STILQ15468 1287 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 PITRM1Q5JRX3 1037 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 GADL1Q6ZQY3 521 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 C2orf40Q9H1Z8 148 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 DAPK2Q9UIK4 370 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 LAMB4A4D0S4 1761 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 C3orf70A6NLC5 250 aaPredicted RBP11.26□□□□□ -0.61
CLN3-244ENST00000636147 DHX15O43143 795 aaKnown RBP11.26□□□□□ -0.61
CLN3-244ENST00000636147 TIMM44O43615 452 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 DDHD2O94830 711 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 JCHAINP01591 159 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 MT-ND1P03886 318 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 SPATA31D3P0C874 917 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 CCDC166P0CW27 439 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 PGAM1P18669 254 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 PSMA4P25789 261 aaKnown RBP11.26□□□□□ -0.61
CLN3-244ENST00000636147 TCF7P36402 384 aaPredicted RBP11.26□□□□□ -0.61
CLN3-244ENST00000636147 ADGRE1Q14246 886 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 Q3C1V9 767 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 SLC9A4Q6AI14 798 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 SPATA31D4Q6ZUB0 917 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 KCTD4Q8WVF5 259 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 GATA5Q9BWX5 397 aaPredicted RBP11.26□□□□□ -0.61
CLN3-244ENST00000636147 ATXN3LQ9H3M9 355 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 POPDC2Q9HBU9 364 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 PCDH18Q9HCL0 1135 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 TRNAU1APQ9NX07 287 aaKnown RBP11.26□□□□□ -0.61
CLN3-244ENST00000636147 SIRPGQ9P1W8 387 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 CROTQ9UKG9 612 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 SH3BP1Q9Y3L3 701 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 KCNU1A8MYU2 1149 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 C9JVG2 144 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 M0QYT0 321 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 MAFGO15525 162 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 APBA3O96018 575 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 MTTPP55157 894 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 LSM12Q3MHD2 195 aaKnown RBP11.26□□□□□ -0.61
CLN3-244ENST00000636147 ARL13AQ5H913 290 aaPredicted RBP11.26□□□□□ -0.61
CLN3-244ENST00000636147 XYLT1Q86Y38 959 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms