RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 RETREG1Q9H6L5 497 aa19.68■□□□□ 0.74
SQSTM1-216ENST00000626660 RBM12Q9NTZ6 932 aaKnown RBP19.68■□□□□ 0.74
SQSTM1-216ENST00000626660 MPP6Q9NZW5 540 aa19.68■□□□□ 0.74
SQSTM1-216ENST00000626660 KIAA1522Q9P206 1035 aaPredicted RBP19.68■□□□□ 0.74
SQSTM1-216ENST00000626660 GGA2Q9UJY4 613 aa19.68■□□□□ 0.74
SQSTM1-216ENST00000626660 A0A0A0MRY4 1105 aa19.67■□□□□ 0.74
SQSTM1-216ENST00000626660 EEF2KO00418 725 aaKnown RBP19.67■□□□□ 0.74
SQSTM1-216ENST00000626660 SPOPO43791 374 aa19.67■□□□□ 0.74
SQSTM1-216ENST00000626660 BUB1BO60566 1050 aaPredicted RBP19.67■□□□□ 0.74
SQSTM1-216ENST00000626660 CNTN5O94779 1100 aa19.67■□□□□ 0.74
SQSTM1-216ENST00000626660 MOCS3O95396 460 aa19.67■□□□□ 0.74
SQSTM1-216ENST00000626660 PABPC1P11940 636 aaKnown RBP19.67■□□□□ 0.74
SQSTM1-216ENST00000626660 EPHB2P29323 1055 aa19.67■□□□□ 0.74
SQSTM1-216ENST00000626660 RPS9P46781 194 aaKnown RBP19.67■□□□□ 0.74
SQSTM1-216ENST00000626660 TPI1P60174 286 aa19.67■□□□□ 0.74
SQSTM1-216ENST00000626660 MESP2Q0VG99 397 aa19.67■□□□□ 0.74
SQSTM1-216ENST00000626660 PPP6R3Q5H9R7 873 aaPredicted RBP19.67■□□□□ 0.74
SQSTM1-216ENST00000626660 KCNT1Q5JUK3 1230 aa19.67■□□□□ 0.74
SQSTM1-216ENST00000626660 ZFYVE27Q5T4F4 411 aa19.67■□□□□ 0.74
SQSTM1-216ENST00000626660 TFAP2DQ7Z6R9 452 aa19.67■□□□□ 0.74
SQSTM1-216ENST00000626660 AHI1Q8N157 1196 aa19.67■□□□□ 0.74
SQSTM1-216ENST00000626660 DDX51Q8N8A6 666 aaKnown RBP eCLIP19.67■□□□□ 0.742e-7■□□□□ 11
SQSTM1-216ENST00000626660 TPCN2Q8NHX9 752 aa19.67■□□□□ 0.74
SQSTM1-216ENST00000626660 WFDC5Q8TCV5 224 aa19.67■□□□□ 0.74
SQSTM1-216ENST00000626660 UCMAQ8WVF2 138 aa19.67■□□□□ 0.74
SQSTM1-216ENST00000626660 CLDN23Q96B33 292 aa19.67■□□□□ 0.74
SQSTM1-216ENST00000626660 PPP1R9BQ96SB3 815 aa19.67■□□□□ 0.74
SQSTM1-216ENST00000626660 KCTD15Q96SI1 283 aaPredicted RBP19.67■□□□□ 0.74
SQSTM1-216ENST00000626660 STAU2Q9NUL3 570 aaKnown RBP eCLIP19.67■□□□□ 0.74
SQSTM1-216ENST00000626660 DUSP10Q9Y6W6 482 aa19.67■□□□□ 0.74
SQSTM1-216ENST00000626660 MACROD2A1Z1Q3 448 aa19.66■□□□□ 0.74
SQSTM1-216ENST00000626660 DAPK3O43293 454 aa19.66■□□□□ 0.74
SQSTM1-216ENST00000626660 KRT86O43790 486 aa19.66■□□□□ 0.74
SQSTM1-216ENST00000626660 DCNP07585 359 aaKnown RBP19.66■□□□□ 0.74
SQSTM1-216ENST00000626660 RHOCP08134 193 aa19.66■□□□□ 0.74
SQSTM1-216ENST00000626660 RARAP10276 462 aa19.66■□□□□ 0.74
SQSTM1-216ENST00000626660 RHOQP17081 205 aa19.66■□□□□ 0.74
SQSTM1-216ENST00000626660 HLA-FP30511 346 aa19.66■□□□□ 0.74
SQSTM1-216ENST00000626660 ARL4AP40617 200 aa19.66■□□□□ 0.74
SQSTM1-216ENST00000626660 LMAN2Q12907 356 aa19.66■□□□□ 0.74
SQSTM1-216ENST00000626660 SEMA3BQ13214 749 aa19.66■□□□□ 0.74
SQSTM1-216ENST00000626660 SLC12A1Q13621 1099 aa19.66■□□□□ 0.74
SQSTM1-216ENST00000626660 KRT81Q14533 505 aa19.66■□□□□ 0.74
SQSTM1-216ENST00000626660 EIF4HQ15056 248 aaKnown RBP19.66■□□□□ 0.74
SQSTM1-216ENST00000626660 E2F5Q15329 346 aa19.66■□□□□ 0.74
SQSTM1-216ENST00000626660 CA9Q16790 459 aa19.66■□□□□ 0.74
SQSTM1-216ENST00000626660 ALFQ53S48 1182 aa19.66■□□□□ 0.74
SQSTM1-216ENST00000626660 C6orf118Q5T5N4 469 aa19.66■□□□□ 0.74
SQSTM1-216ENST00000626660 DAAM2Q86T65 1068 aa19.66■□□□□ 0.74
SQSTM1-216ENST00000626660 CPNE8Q86YQ8 564 aa19.66■□□□□ 0.74
SQSTM1-216ENST00000626660 CATSPERBQ9H7T0 1116 aa19.66■□□□□ 0.74
SQSTM1-216ENST00000626660 SALL4Q9UJQ4 1053 aa19.66■□□□□ 0.74
SQSTM1-216ENST00000626660 H3BRJ5 948 aa19.65■□□□□ 0.74
SQSTM1-216ENST00000626660 K7EQS6 105 aa19.65■□□□□ 0.74
SQSTM1-216ENST00000626660 FGF10O15520 208 aaPredicted RBP19.65■□□□□ 0.74
SQSTM1-216ENST00000626660 TIMM44O43615 452 aa19.65■□□□□ 0.74
SQSTM1-216ENST00000626660 PI15O43692 258 aa19.65■□□□□ 0.74
SQSTM1-216ENST00000626660 RNF40O75150 1001 aa19.65■□□□□ 0.74
SQSTM1-216ENST00000626660 POLR2EP19388 210 aaKnown RBP19.65■□□□□ 0.74
SQSTM1-216ENST00000626660 COMTP21964 271 aa19.65■□□□□ 0.74
SQSTM1-216ENST00000626660 OR1E1P30953 314 aa19.65■□□□□ 0.74
SQSTM1-216ENST00000626660 HOXC13P31276 330 aa19.65■□□□□ 0.74
SQSTM1-216ENST00000626660 CD70P32970 193 aa19.65■□□□□ 0.74
SQSTM1-216ENST00000626660 MAPKAPK2P49137 400 aa19.65■□□□□ 0.74
SQSTM1-216ENST00000626660 SEC13P55735 322 aa19.65■□□□□ 0.74
SQSTM1-216ENST00000626660 TAS2R40P59535 323 aa19.65■□□□□ 0.74
SQSTM1-216ENST00000626660 FZD5Q13467 585 aa19.65■□□□□ 0.74
SQSTM1-216ENST00000626660 DMC1Q14565 340 aa19.65■□□□□ 0.74
SQSTM1-216ENST00000626660 DPYSL2Q16555 572 aa19.65■□□□□ 0.74
SQSTM1-216ENST00000626660 GEN1Q17RS7 908 aa19.65■□□□□ 0.74
SQSTM1-216ENST00000626660 POLNQ7Z5Q5 900 aa19.65■□□□□ 0.74
SQSTM1-216ENST00000626660 SETD3Q86TU7 594 aaPredicted RBP19.65■□□□□ 0.74
SQSTM1-216ENST00000626660 EZH1Q92800 747 aaPredicted RBP19.65■□□□□ 0.74
SQSTM1-216ENST00000626660 IER2Q9BTL4 223 aa19.65■□□□□ 0.74
SQSTM1-216ENST00000626660 CIPCQ9C0C6 399 aa19.65■□□□□ 0.74
SQSTM1-216ENST00000626660 DONSONQ9NYP3 566 aa19.65■□□□□ 0.74
SQSTM1-216ENST00000626660 TBC1D30Q9Y2I9 924 aa19.65■□□□□ 0.74
SQSTM1-216ENST00000626660 ALG6Q9Y672 507 aa19.65■□□□□ 0.74
SQSTM1-216ENST00000626660 PRRT4C9JH25 899 aa19.64■□□□□ 0.73
SQSTM1-216ENST00000626660 HCAR3P49019 387 aa19.64■□□□□ 0.73
SQSTM1-216ENST00000626660 CDH6P55285 790 aa19.64■□□□□ 0.73
SQSTM1-216ENST00000626660 MRPS21P82921 87 aaKnown RBP19.64■□□□□ 0.73
SQSTM1-216ENST00000626660 FSCBQ5H9T9 825 aa19.64■□□□□ 0.73
SQSTM1-216ENST00000626660 LRRC38Q5VT99 294 aa19.64■□□□□ 0.73
SQSTM1-216ENST00000626660 TXNRD3NBQ6F5E7 133 aa19.64■□□□□ 0.73
SQSTM1-216ENST00000626660 CXorf57Q6NSI4 855 aaKnown RBP19.64■□□□□ 0.73
SQSTM1-216ENST00000626660 RFX8Q6ZV50 586 aa19.64■□□□□ 0.73
SQSTM1-216ENST00000626660 KIAA0907Q7Z7F0 614 aaPredicted RBP19.64■□□□□ 0.73
SQSTM1-216ENST00000626660 SFTPA1Q8IWL2 248 aa19.64■□□□□ 0.73
SQSTM1-216ENST00000626660 RHOT1Q8IXI2 618 aa19.64■□□□□ 0.73
SQSTM1-216ENST00000626660 KCTD6Q8NC69 237 aa19.64■□□□□ 0.73
SQSTM1-216ENST00000626660 MUC3BQ9H195 1237 aa19.64■□□□□ 0.73
SQSTM1-216ENST00000626660 KCNH6Q9H252 994 aa19.64■□□□□ 0.73
SQSTM1-216ENST00000626660 CHRDQ9H2X0 955 aa19.64■□□□□ 0.73
SQSTM1-216ENST00000626660 TMEM248Q9NWD8 314 aa19.64■□□□□ 0.73
SQSTM1-216ENST00000626660 ELOVL2Q9NXB9 296 aa19.64■□□□□ 0.73
SQSTM1-216ENST00000626660 TRIM10Q9UDY6 481 aa19.64■□□□□ 0.73
SQSTM1-216ENST00000626660 GUCA1BQ9UMX6 200 aa19.64■□□□□ 0.73
SQSTM1-216ENST00000626660 ATG13O75143 517 aa19.63■□□□□ 0.73
SQSTM1-216ENST00000626660 ATP5BP06576 529 aaKnown RBP19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms