RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.77■□□□□ 0.28
LDB3-208ENST00000623007 BFARQ9NZS9 450 aa16.77■□□□□ 0.28
LDB3-208ENST00000623007 SEPT10Q9P0V9 454 aa16.77■□□□□ 0.28
LDB3-208ENST00000623007 SAMD15Q9P1V8 674 aa16.77■□□□□ 0.28
LDB3-208ENST00000623007 RSPH14Q9UHP6 348 aa16.77■□□□□ 0.28
LDB3-208ENST00000623007 I6L893 689 aaPredicted RBP16.76■□□□□ 0.27
LDB3-208ENST00000623007 ANXA9O76027 345 aa16.76■□□□□ 0.27
LDB3-208ENST00000623007 ZDHHC11BP0C7U3 371 aa16.76■□□□□ 0.27
LDB3-208ENST00000623007 RHOQP17081 205 aa16.76■□□□□ 0.27
LDB3-208ENST00000623007 IFNAR2P48551 515 aa16.76■□□□□ 0.27
LDB3-208ENST00000623007 CCT5P48643 541 aa16.76■□□□□ 0.27
LDB3-208ENST00000623007 NPY2RP49146 381 aa16.76■□□□□ 0.27
LDB3-208ENST00000623007 ATN1P54259 1190 aaPredicted RBP16.76■□□□□ 0.27
LDB3-208ENST00000623007 NRLP54845 237 aa16.76■□□□□ 0.27
LDB3-208ENST00000623007 FAXCQ5TGI0 409 aa16.76■□□□□ 0.27
LDB3-208ENST00000623007 SNX30Q5VWJ9 437 aa16.76■□□□□ 0.27
LDB3-208ENST00000623007 KLHDC10Q6PID8 442 aa16.76■□□□□ 0.27
LDB3-208ENST00000623007 ZNF534Q76KX8 674 aa16.76■□□□□ 0.27
LDB3-208ENST00000623007 CCDC117Q8IWD4 279 aaPredicted RBP16.76■□□□□ 0.27
LDB3-208ENST00000623007 CMTR2Q8IYT2 770 aaKnown RBP16.76■□□□□ 0.27
LDB3-208ENST00000623007 CYP4X1Q8N118 509 aa16.76■□□□□ 0.27
LDB3-208ENST00000623007 ATAD1Q8NBU5 361 aa16.76■□□□□ 0.27
LDB3-208ENST00000623007 MDM1Q8TC05 714 aa16.76■□□□□ 0.27
LDB3-208ENST00000623007 DCAKDQ8WVC6 231 aa16.76■□□□□ 0.27
LDB3-208ENST00000623007 CKAP2Q8WWK9 683 aa16.76■□□□□ 0.27
LDB3-208ENST00000623007 IGSF21Q96ID5 467 aa16.76■□□□□ 0.27
LDB3-208ENST00000623007 ZNF317Q96PQ6 595 aaPredicted RBP16.76■□□□□ 0.27
LDB3-208ENST00000623007 SEPT5Q99719 369 aaPredicted RBP16.76■□□□□ 0.27
LDB3-208ENST00000623007 PRMT1Q99873 361 aaKnown RBP16.76■□□□□ 0.27
LDB3-208ENST00000623007 WDR83Q9BRX9 315 aaKnown RBP16.76■□□□□ 0.27
LDB3-208ENST00000623007 PPP1R12CQ9BZL4 782 aa16.76■□□□□ 0.27
LDB3-208ENST00000623007 SIK2Q9H0K1 926 aa16.76■□□□□ 0.27
LDB3-208ENST00000623007 NMUR1Q9HB89 426 aa16.76■□□□□ 0.27
LDB3-208ENST00000623007 GMIPQ9P107 970 aa16.76■□□□□ 0.27
LDB3-208ENST00000623007 AFF4Q9UHB7 1163 aaKnown RBP16.76■□□□□ 0.27
LDB3-208ENST00000623007 SFMBT1Q9UHJ3 866 aa16.76■□□□□ 0.27
LDB3-208ENST00000623007 MFHAS1Q9Y4C4 1052 aa16.76■□□□□ 0.27
LDB3-208ENST00000623007 MAD1L1Q9Y6D9 718 aa16.76■□□□□ 0.27
LDB3-208ENST00000623007 E9PAM4 449 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 ALDH1A2O94788 518 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 MT-ND3P03897 115 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 SOD2P04179 222 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 POLBP06746 335 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 SNRPAP09012 282 aaKnown RBP16.75■□□□□ 0.27
LDB3-208ENST00000623007 CSH1P0DML2 217 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 CSH2P0DML3 217 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 LAG3P18627 525 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 TUBP50607 506 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 PSMD5Q16401 504 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 KBTBD12Q3ZCT8 623 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 SPANXN3Q5MJ09 141 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 RTP2Q5QGT7 225 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 CAPN12Q6ZSI9 719 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 KLHDC8BQ8IXV7 354 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 CACNA2D3Q8IZS8 1091 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 PDCD7Q8N8D1 485 aaKnown RBP16.75■□□□□ 0.27
LDB3-208ENST00000623007 STKLD1Q8NE28 680 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 TOP1MTQ969P6 601 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 ZNF558Q96NG5 402 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 PGLYRP2Q96PD5 576 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 ZYG11BQ9C0D3 744 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 MARCH2Q9P0N8 246 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 SSX2IPQ9Y2D8 614 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 ARHGAP42A6NI28 874 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 MATN3O15232 486 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 CACNG3O60359 315 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 BAIAP3O94812 1187 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 KIAA0754O94854 1291 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 IGLV3-27P01718 113 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 PSMB4P28070 264 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 ARPP19P56211 112 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 TAF10Q12962 218 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 AFMIDQ63HM1 303 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 FBXO46Q6PJ61 603 aaPredicted RBP16.75■□□□□ 0.27
LDB3-208ENST00000623007 RGS9BPQ6ZS82 235 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 CTU1Q7Z7A3 348 aaKnown RBP16.75■□□□□ 0.27
LDB3-208ENST00000623007 DEFB128Q7Z7B8 93 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 UMODL1-AS1Q8N2C9 162 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 NPWQ8N729 165 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 NSMCE1Q8WV22 266 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 CFAP36Q96G28 342 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 ZNF333Q96JL9 665 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 WBP1LQ9NX94 342 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 TTLL3Q9Y4R7 772 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 HS3ST4Q9Y661 456 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 CDY1Q9Y6F8 540 aa16.75■□□□□ 0.27
LDB3-208ENST00000623007 IGLV3-10A0A075B6K4 115 aa16.74■□□□□ 0.27
LDB3-208ENST00000623007 GOLGA6L7A0A1B0GV03 622 aa16.74■□□□□ 0.27
LDB3-208ENST00000623007 FAM159BA6NKW6 160 aa16.74■□□□□ 0.27
LDB3-208ENST00000623007 BANF1O75531 89 aa16.74■□□□□ 0.27
LDB3-208ENST00000623007 NEBLO76041 1014 aa16.74■□□□□ 0.27
LDB3-208ENST00000623007 PPM1AP35813 382 aa16.74■□□□□ 0.27
LDB3-208ENST00000623007 SEC24CP53992 1094 aa16.74■□□□□ 0.27
LDB3-208ENST00000623007 RNF19BQ6ZMZ0 732 aa16.74■□□□□ 0.27
LDB3-208ENST00000623007 UNC5AQ6ZN44 842 aa16.74■□□□□ 0.27
LDB3-208ENST00000623007 ZNF461Q8TAF7 563 aa16.74■□□□□ 0.27
LDB3-208ENST00000623007 ARMC5Q96C12 935 aa16.74■□□□□ 0.27
LDB3-208ENST00000623007 TMEM169Q96HH4 297 aa16.74■□□□□ 0.27
LDB3-208ENST00000623007 IL22Q9GZX6 179 aa16.74■□□□□ 0.27
LDB3-208ENST00000623007 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms