RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.1□□□□□ -1.11
VPS11-209ENST00000622309 TRIM39Q9HCM9 518 aa8.1□□□□□ -1.11
VPS11-209ENST00000622309 POLMQ9NP87 494 aaPredicted RBP8.1□□□□□ -1.11
VPS11-209ENST00000622309 KLQ9UEF7 1012 aa8.1□□□□□ -1.11
VPS11-209ENST00000622309 ASTN2O75129 1339 aaPredicted RBP8.1□□□□□ -1.11
VPS11-209ENST00000622309 POTEMA6NI47 508 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 USP17L12C9JPN9 530 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 USP17L21D6R901 530 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 GOLGA8SH3BPF8 625 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 JRKO75564 520 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 AKAP3O75969 853 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 MFN2O95140 757 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 INHBAP08476 426 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 RPL10P27635 214 aaKnown RBP8.09□□□□□ -1.11
VPS11-209ENST00000622309 OPRL1P41146 370 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 UTRNP46939 3433 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 GBE1Q04446 702 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 MGAT5BQ3V5L5 792 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 UGT3A1Q6NUS8 523 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 NSMFQ6X4W1 530 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 KCNK18Q7Z418 384 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 BHLHE22Q8NFJ8 381 aaPredicted RBP8.09□□□□□ -1.11
VPS11-209ENST00000622309 DLG3Q92796 817 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 CIB1Q99828 191 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 ANO3Q9BYT9 981 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 NYXQ9GZU5 481 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 SEMA6AQ9H2E6 1030 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 RAD21L1Q9H4I0 556 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 ENAMQ9NRM1 1142 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 HOMER2Q9NSB8 354 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 MINPP1Q9UNW1 487 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 C10orf71Q711Q0 1435 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 H0YJX3 145 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 EML1O00423 815 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 ARHGAP33O14559 1287 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 GZMAP12544 262 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 GABRB3P28472 473 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 IDUAP35475 653 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 STILQ15468 1287 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 NEDD8Q15843 81 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 SLX4IPQ5VYV7 408 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 NXNQ6DKJ4 435 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 TRIM72Q6ZMU5 477 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 FRMD7Q6ZUT3 714 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 GALNT7Q86SF2 657 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 ZFPM1Q8IX07 1006 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 CTAGE3PQ8IX95 158 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 DNAJC5GQ8N7S2 189 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 OLIG1Q8TAK6 271 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 SLC20A1Q8WUM9 679 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 DPF3Q92784 378 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 SLC35C1Q96A29 364 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 ZNF597Q96LX8 424 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 MTG1Q9BT17 334 aaPredicted RBP8.09□□□□□ -1.11
VPS11-209ENST00000622309 MAGEE1Q9HCI5 957 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 DDX28Q9NUL7 540 aaKnown RBP8.09□□□□□ -1.11
VPS11-209ENST00000622309 FETUBQ9UGM5 382 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 HMGXB4Q9UGU5 601 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 PCDHA12Q9UN75 941 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 CAB39Q9Y376 341 aaPredicted RBP8.09□□□□□ -1.11
VPS11-209ENST00000622309 LY75O60449 1722 aa8.09□□□□□ -1.11
VPS11-209ENST00000622309 TMEM238LA0A1B0GVL6 79 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 SMCO2A6NFE2 343 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 C2orf81A6NN90 581 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 M0R2N6 131 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 VWA5AO00534 786 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 AURKAO14965 403 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 CFLARO15519 480 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 MTSS1O43312 755 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 FAM189A1O60320 539 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 AGR2O95994 175 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 ERBB2P04626 1255 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 ZNF26P17031 533 aaPredicted RBP8.08□□□□□ -1.12
VPS11-209ENST00000622309 DNAJA1P31689 397 aaKnown RBP8.08□□□□□ -1.12
VPS11-209ENST00000622309 MSX2P35548 267 aaPredicted RBP8.08□□□□□ -1.12
VPS11-209ENST00000622309 ARSEP51690 589 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 PRELPP51888 382 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 PTPN5P54829 565 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 NAPAP54920 295 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 IKBKEQ14164 716 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 MAPK11Q15759 364 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 NPTX1Q15818 432 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 HIF1AQ16665 826 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 CEP55Q53EZ4 464 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 IQSEC1Q6DN90 963 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 PLEKHG7Q6ZR37 379 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 TXNRD3Q86VQ6 643 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 DAGLBQ8NCG7 672 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 PDCD6IPQ8WUM4 868 aaKnown RBP8.08□□□□□ -1.12
VPS11-209ENST00000622309 FIG4Q92562 907 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 SYT11Q9BT88 431 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 CNTN3Q9P232 1028 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 ZHX2Q9Y6X8 837 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 EVPLLA8MZ36 301 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 AIM2O14862 343 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 SLC22A1O15245 554 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 SNX2O60749 519 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 KCNH1O95259 989 aa8.08□□□□□ -1.12
VPS11-209ENST00000622309 PTPN1P18031 435 aaKnown RBP8.08□□□□□ -1.12
VPS11-209ENST00000622309 TGM1P22735 817 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms