RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 ADAT2Q7Z6V5 191 aaKnown RBP12.32□□□□□ -0.44
UPF3B-204ENST00000619445 DSG4Q86SJ6 1040 aa12.32□□□□□ -0.44
UPF3B-204ENST00000619445 TAC4Q86UU9 113 aa12.32□□□□□ -0.44
UPF3B-204ENST00000619445 FAM114A1Q8IWE2 563 aa12.32□□□□□ -0.44
UPF3B-204ENST00000619445 ZNF366Q8N895 744 aa12.32□□□□□ -0.44
UPF3B-204ENST00000619445 WFDC5Q8TCV5 224 aa12.32□□□□□ -0.44
UPF3B-204ENST00000619445 BIRC7Q96CA5 298 aa12.32□□□□□ -0.44
UPF3B-204ENST00000619445 PRICKLE1Q96MT3 831 aaPredicted RBP12.32□□□□□ -0.44
UPF3B-204ENST00000619445 OMDQ99983 421 aa12.32□□□□□ -0.44
UPF3B-204ENST00000619445 NUCKS1Q9H1E3 243 aaKnown RBP12.32□□□□□ -0.44
UPF3B-204ENST00000619445 TM9SF3Q9HD45 589 aa12.32□□□□□ -0.44
UPF3B-204ENST00000619445 FBXL12Q9NXK8 326 aa12.32□□□□□ -0.44
UPF3B-204ENST00000619445 RRN3Q9NYV6 651 aa12.32□□□□□ -0.44
UPF3B-204ENST00000619445 ADAMTS1Q9UHI8 967 aa12.32□□□□□ -0.44
UPF3B-204ENST00000619445 ERVW-1Q9UQF0 538 aa12.32□□□□□ -0.44
UPF3B-204ENST00000619445 GOLGA4Q13439 2230 aaKnown RBP12.32□□□□□ -0.44
UPF3B-204ENST00000619445 A0A1B0GVM2 712 aa12.31□□□□□ -0.44
UPF3B-204ENST00000619445 A0A1B0GVT2 93 aa12.31□□□□□ -0.44
UPF3B-204ENST00000619445 TCAF2A6NFQ2 919 aa12.31□□□□□ -0.44
UPF3B-204ENST00000619445 KCNU1A8MYU2 1149 aa12.31□□□□□ -0.44
UPF3B-204ENST00000619445 YKT6O15498 198 aa12.31□□□□□ -0.44
UPF3B-204ENST00000619445 PCDHGA12O60330 932 aa12.31□□□□□ -0.44
UPF3B-204ENST00000619445 FSBPO95073 299 aa12.31□□□□□ -0.44
UPF3B-204ENST00000619445 TOP3BO95985 862 aaKnown RBP12.31□□□□□ -0.44
UPF3B-204ENST00000619445 IGLV3-25P01717 112 aa12.31□□□□□ -0.44
UPF3B-204ENST00000619445 TACR2P21452 398 aa12.31□□□□□ -0.44
UPF3B-204ENST00000619445 C5AR1P21730 350 aa12.31□□□□□ -0.44
UPF3B-204ENST00000619445 NUDT1P36639 197 aa12.31□□□□□ -0.44
UPF3B-204ENST00000619445 CSNK1EP49674 416 aaKnown RBP12.31□□□□□ -0.44
UPF3B-204ENST00000619445 BPIFB4P59827 614 aa12.31□□□□□ -0.44
UPF3B-204ENST00000619445 UBE2HP62256 183 aa12.31□□□□□ -0.44
UPF3B-204ENST00000619445 ELAVL3Q14576 367 aaKnown RBP12.31□□□□□ -0.44
UPF3B-204ENST00000619445 SYPL2Q5VXT5 272 aa12.31□□□□□ -0.44
UPF3B-204ENST00000619445 KIAA0895LQ68EN5 471 aa12.31□□□□□ -0.44
UPF3B-204ENST00000619445 DENND1BQ6P3S1 775 aa12.31□□□□□ -0.44
UPF3B-204ENST00000619445 ZDHHC17Q8IUH5 632 aa12.31□□□□□ -0.44
UPF3B-204ENST00000619445 LGI2Q8N0V4 545 aa12.31□□□□□ -0.44
UPF3B-204ENST00000619445 CHCHD4Q8N4Q1 142 aa12.31□□□□□ -0.44
UPF3B-204ENST00000619445 MLKLQ8NB16 471 aa12.31□□□□□ -0.44
UPF3B-204ENST00000619445 OR2T34Q8NGX1 318 aa12.31□□□□□ -0.44
UPF3B-204ENST00000619445 MYO19Q96H55 970 aa12.31□□□□□ -0.44
UPF3B-204ENST00000619445 ACE2Q9BYF1 805 aaPredicted RBP12.31□□□□□ -0.44
UPF3B-204ENST00000619445 FAM204AQ9H8W3 233 aa12.31□□□□□ -0.44
UPF3B-204ENST00000619445 KLK13Q9UKR3 277 aa12.31□□□□□ -0.44
UPF3B-204ENST00000619445 PCDHGC3Q9UN70 934 aa12.31□□□□□ -0.44
UPF3B-204ENST00000619445 ANKRD6Q9Y2G4 727 aa12.31□□□□□ -0.44
UPF3B-204ENST00000619445 FNDC3AQ9Y2H6 1198 aaKnown RBP12.31□□□□□ -0.44
UPF3B-204ENST00000619445 PAXBP1Q9Y5B6 917 aa12.31□□□□□ -0.44
UPF3B-204ENST00000619445 ZZEF1O43149 2961 aa12.31□□□□□ -0.44
UPF3B-204ENST00000619445 A0A1W2PPC4 97 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 VILLO15195 856 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 SIN3BO75182 1162 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 CDK4P11802 303 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 USP8P40818 1118 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 CCR5P51681 352 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 PLK1P53350 603 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 C21orf59P57076 290 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 FAM193AP78312 1265 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 TPD52L1Q16890 204 aaPredicted RBP12.3□□□□□ -0.44
UPF3B-204ENST00000619445 KIF19Q2TAC6 998 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 SLC45A4Q5BKX6 768 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 ZC3H12AQ5D1E8 599 aaKnown RBP12.3□□□□□ -0.44
UPF3B-204ENST00000619445 C9orf64Q5T6V5 341 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 FAM46CQ5VWP2 391 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 SND1Q7KZF4 910 aaKnown RBP eCLIP12.3□□□□□ -0.44
UPF3B-204ENST00000619445 GALNT15Q8N3T1 639 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 C1orf131Q8NDD1 294 aaKnown RBP12.3□□□□□ -0.44
UPF3B-204ENST00000619445 ADAM32Q8TC27 787 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 RHBDD1Q8TEB9 315 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 SHC3Q92529 594 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 RNF34Q969K3 372 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 PPP1R13BQ96KQ4 1090 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 MRGPRX3Q96LB0 322 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 CAMK1GQ96NX5 476 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 KDM4CQ9H3R0 1056 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 DDIT4Q9NX09 232 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 INTS6Q9UL03 887 aaKnown RBP12.3□□□□□ -0.44
UPF3B-204ENST00000619445 DSPP15924 2871 aaKnown RBP12.3□□□□□ -0.44
UPF3B-204ENST00000619445 CACNA1GO43497 2377 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 SLC7A4O43246 635 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 TNFSF14O43557 240 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 RNASEH2AO75792 299 aaKnown RBP12.3□□□□□ -0.44
UPF3B-204ENST00000619445 GOT1P17174 413 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 SLC8A1P32418 973 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 KRT9P35527 623 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 MTIF2P46199 727 aaKnown RBP12.3□□□□□ -0.44
UPF3B-204ENST00000619445 GALCP54803 685 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 BNC1Q01954 994 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 CCDC15Q0P6D6 951 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 EIF4EBP2Q13542 120 aaPredicted RBP12.3□□□□□ -0.44
UPF3B-204ENST00000619445 ARHGAP44Q17R89 818 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 RAP1GAP2Q684P5 730 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 C11orf57Q6ZUT1 292 aaPredicted RBP12.3□□□□□ -0.44
UPF3B-204ENST00000619445 CREBRFQ8IUR6 639 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 DHX40Q8IX18 779 aaKnown RBP12.3□□□□□ -0.44
UPF3B-204ENST00000619445 CFAP52Q8N1V2 620 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 OXR1Q8N573 874 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 BAHD1Q8TBE0 780 aaPredicted RBP12.3□□□□□ -0.44
UPF3B-204ENST00000619445 SLC2A13Q96QE2 648 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 SPAG5Q96R06 1193 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms