RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 SORBS3O60504 671 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 TFE3P19532 575 aaPredicted RBP5.05□□□□□ -1.6
VPS13D-213ENST00000613099 TAF5Q15542 800 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 NRF1Q16656 503 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 PITRM1Q5JRX3 1037 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 SLC51BQ86UW2 128 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 ZNF564Q8TBZ8 553 aaPredicted RBP5.05□□□□□ -1.6
VPS13D-213ENST00000613099 APOPT1Q96IL0 206 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 MKS1Q9NXB0 559 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 GTSE1Q9NYZ3 720 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 ALDH6A1Q02252 535 aaKnown RBP5.04□□□□□ -1.6
VPS13D-213ENST00000613099 ZFPM2Q8WW38 1151 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 INPP4AQ96PE3 977 aaPredicted RBP5.04□□□□□ -1.6
VPS13D-213ENST00000613099 TMEM246Q9BRR3 403 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 WDR41Q9HAD4 459 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 ZNF334Q9HCZ1 680 aaPredicted RBP5.04□□□□□ -1.6
VPS13D-213ENST00000613099 EMILIN3Q9NT22 766 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 CNOT8Q9UFF9 292 aaKnown RBP5.04□□□□□ -1.6
VPS13D-213ENST00000613099 GSAPA4D1B5 854 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 CLDN3O15551 220 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 SNRPA1P09661 255 aaKnown RBP5.04□□□□□ -1.6
VPS13D-213ENST00000613099 WEE2P0C1S8 567 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 S100PP25815 95 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 ESCO2Q56NI9 601 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 CENPPQ6IPU0 288 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 LLGL2Q6P1M3 1020 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 THAP5Q7Z6K1 395 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 AADATQ8N5Z0 425 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 BHLHE22Q8NFJ8 381 aaPredicted RBP5.04□□□□□ -1.6
VPS13D-213ENST00000613099 DUSP9Q99956 384 aaKnown RBP5.04□□□□□ -1.6
VPS13D-213ENST00000613099 ARL8BQ9NVJ2 186 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 BFARQ9NZS9 450 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 CNOT11Q9UKZ1 510 aaKnown RBP5.04□□□□□ -1.6
VPS13D-213ENST00000613099 CPSF1Q10570 1443 aaKnown RBP5.04□□□□□ -1.6
VPS13D-213ENST00000613099 IL18RAPO95256 599 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 ANXA6P08133 673 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 CBX5P45973 191 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 KCTD8Q6ZWB6 473 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 ADGRG6Q86SQ4 1221 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 SLC22A16Q86VW1 577 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 METTL2AQ96IZ6 378 aaKnown RBP5.04□□□□□ -1.6
VPS13D-213ENST00000613099 CALN1Q9BXU9 219 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 PCDHA4Q9UN74 947 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 KDM6AO15550 1401 aaPredicted RBP5.04□□□□□ -1.6
VPS13D-213ENST00000613099 GALCP54803 685 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 PLEKHG6Q3KR16 790 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 Q3ZCU0 254 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 ARL6IP6Q8N6S5 226 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 FBXO30Q8TB52 745 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 GAB3Q8WWW8 586 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 PLEKHF1Q96S99 279 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 PFDN5Q99471 154 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 ZSWIM1Q9BR11 485 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 ABCG8Q9H221 673 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 HPSEQ9Y251 543 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 E2F3O00716 465 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 EDF1O60869 148 aaKnown RBP5.04□□□□□ -1.6
VPS13D-213ENST00000613099 AQP4P55087 323 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 DRAP1Q14919 205 aaPredicted RBP5.04□□□□□ -1.6
VPS13D-213ENST00000613099 SKIV2LQ15477 1246 aaKnown RBP5.04□□□□□ -1.6
VPS13D-213ENST00000613099 CDKL4Q5MAI5 379 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 CCDC185Q8N715 623 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 CDC42EP4Q9H3Q1 356 aaKnown RBP5.04□□□□□ -1.6
VPS13D-213ENST00000613099 ANAPC7Q9UJX3 599 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 PIGBOS1A0A0B4J2F0 54 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 K7EPI3 171 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 EYA2O00167 538 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 PRPSAP2O60256 369 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 NR3C1P04150 777 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 POLR2CP19387 275 aaPredicted RBP5.04□□□□□ -1.6
VPS13D-213ENST00000613099 SLC9A5Q14940 896 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 PGM2L1Q6PCE3 622 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 PI4K2BQ8TCG2 481 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 EAF2Q96CJ1 260 aaPredicted RBP5.04□□□□□ -1.6
VPS13D-213ENST00000613099 MAP3K14Q99558 947 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 SLC25A23Q9BV35 468 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 FAM240BA0A1B0GVZ2 78 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 DHFRP00374 187 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 SLC15A1P46059 708 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 SEPHS1P49903 392 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 SLC39A6Q13433 755 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 BRMS1LQ5PSV4 323 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 LCN1P1Q5VSP4 162 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 IQSEC1Q6DN90 963 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 RRM2BQ7LG56 351 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 ZCCHC9Q8N567 271 aaKnown RBP5.04□□□□□ -1.6
VPS13D-213ENST00000613099 OR5T2Q8NGG2 359 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 HGH1Q9BTY7 390 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 TIAM2Q8IVF5 1701 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 UBE2QL1A1L167 161 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 CYP21A2P08686 494 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 CLTBP09497 229 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 PAMP19021 973 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 PHKG1Q16816 387 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 ACSBG2Q5FVE4 666 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 SLC4A11Q8NBS3 891 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 NCSTNQ92542 709 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 RBBP8Q99708 897 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 TMEM121Q9BTD3 319 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 SHOC2Q9UQ13 582 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms